Wall clock time and date at job start Mon Mar 30 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.40087 * 126.03579 * 2 1 4 4 C 1.30832 * 108.20628 * 179.97438 * 3 2 1 5 5 C 1.39880 * 108.20057 * 359.78019 * 4 3 2 6 6 C 1.34946 * 126.03679 * 179.97438 * 2 1 3 7 7 C 1.50693 * 126.12839 * 359.97438 * 6 2 1 8 8 H 1.09004 * 110.06519 * 26.21048 * 7 6 2 9 9 N 1.47905 * 109.91694 * 147.41636 * 7 6 2 10 10 C 1.48528 * 105.81966 * 144.68536 * 9 7 6 11 11 C 1.54943 * 103.22967 * 320.79102 * 10 9 7 12 12 C 1.53992 * 109.91902 * 265.00600 * 7 6 2 13 13 H 1.08997 * 110.39514 * 358.38352 * 12 7 6 14 14 C 1.50706 * 110.31122 * 120.50564 * 12 7 6 15 15 H 1.08005 * 119.99758 * 357.17105 * 14 12 7 16 16 C 1.37871 * 120.00102 * 177.16989 * 14 12 7 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47483 * 269.99808 * 18 16 14 20 20 H 1.48499 * 109.47134 * 30.00322 * 18 16 14 21 21 H 1.48507 * 109.46904 * 150.00145 * 18 16 14 22 22 H 1.08998 * 109.47032 * 270.02340 * 1 2 3 23 23 H 1.09002 * 109.47219 * 30.02158 * 1 2 3 24 24 H 1.09003 * 109.46635 * 150.01874 * 1 2 3 25 25 H 1.08000 * 125.90141 * 180.02562 * 4 3 2 26 26 H 1.08002 * 126.03924 * 180.23205 * 5 4 3 27 27 H 1.00897 * 110.99820 * 265.19601 * 9 7 6 28 28 H 1.09003 * 110.66946 * 202.35870 * 10 9 7 29 29 H 1.09004 * 110.67280 * 79.22513 * 10 9 7 30 30 H 1.08997 * 110.72376 * 279.06062 * 11 10 9 31 31 H 1.08997 * 110.87628 * 155.84001 * 11 10 9 32 32 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7322 0.0006 5 6 3.5437 -0.6665 0.0060 6 6 2.2590 -1.0912 0.0005 7 6 1.7974 -2.5257 0.0017 8 1 0.8083 -2.6007 -0.4501 9 7 2.7582 -3.3648 -0.7469 10 6 2.7907 -4.6712 -0.0411 11 6 2.7250 -4.2684 1.4536 12 6 1.7572 -3.0627 1.4444 13 1 2.0977 -2.2990 2.1436 14 6 0.3619 -3.5093 1.7977 15 1 -0.4419 -3.3820 1.0875 16 6 0.1114 -4.0804 3.0273 17 7 1.0901 -4.2350 3.8922 18 14 -1.6183 -4.6332 3.4654 19 1 -2.3464 -3.5136 4.1146 20 1 -2.3356 -5.0402 2.2304 21 1 -1.5479 -5.7856 4.3995 22 1 -0.3633 0.0004 1.0276 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5136 25 1 4.4054 1.3711 0.0011 26 1 4.4211 -1.2963 0.0113 27 1 2.4674 -3.4793 -1.7063 28 1 3.7183 -5.2017 -0.2560 29 1 1.9272 -5.2778 -0.3143 30 1 3.7087 -3.9706 1.8165 31 1 2.3224 -5.0814 2.0577 32 1 1.9882 -3.9475 3.6648 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260232629.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:36 Heat of formation + Delta-G solvation = 75.723893 kcal Electronic energy + Delta-G solvation = -15401.382706 eV Core-core repulsion = 12977.324321 eV Total energy + Delta-G solvation = -2424.058386 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.71118 -37.74217 -33.12132 -32.77590 -30.46858 -28.86571 -27.24628 -26.23361 -24.20928 -21.48927 -20.46971 -19.90234 -18.74958 -17.22060 -16.33188 -15.31566 -14.85615 -14.33512 -14.02816 -13.75984 -13.18429 -12.86034 -12.35967 -12.13341 -11.90450 -11.81252 -11.60240 -11.04679 -10.89827 -10.56776 -10.27645 -10.18387 -10.15142 -9.93145 -8.75007 -8.55833 -8.41493 -8.06181 -7.84665 -6.44619 -4.20276 2.44522 3.02268 3.35083 3.37261 3.41801 3.52775 4.41883 4.75899 5.05495 5.22246 5.40624 5.51892 5.59726 5.67504 5.83752 5.89787 5.96172 6.11539 6.28303 6.32035 6.39334 6.72692 6.83259 6.88075 7.22127 7.23594 7.29052 7.44140 7.56389 7.83579 8.08364 8.25988 8.28065 8.74182 9.52329 10.92588 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028495 B = 0.010352 C = 0.008697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.409174 B = 2704.168569 C = 3218.818186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.373 5.373 3 N -0.317 5.317 4 C 0.035 3.965 5 C -0.261 4.261 6 C 0.120 3.880 7 C 0.139 3.861 8 H 0.054 0.946 9 N -0.664 5.664 10 C 0.049 3.951 11 C -0.120 4.120 12 C 0.043 3.957 13 H 0.026 0.974 14 C -0.599 4.599 15 H 0.048 0.952 16 C 0.023 3.977 17 N -0.907 5.907 18 Si 1.067 2.933 19 H -0.288 1.288 20 H -0.289 1.289 21 H -0.283 1.283 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.175 0.825 26 H 0.145 0.855 27 H 0.326 0.674 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.044 0.956 31 H 0.079 0.921 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 2.926 -7.892 8.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.156 5.156 3 N -0.139 5.139 4 C -0.150 4.150 5 C -0.290 4.290 6 C -0.008 4.008 7 C 0.028 3.972 8 H 0.071 0.929 9 N -0.292 5.292 10 C -0.080 4.080 11 C -0.159 4.159 12 C 0.024 3.976 13 H 0.044 0.956 14 C -0.637 4.637 15 H 0.066 0.934 16 C -0.182 4.182 17 N -0.542 5.542 18 Si 0.896 3.104 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.209 1.209 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.102 0.898 25 H 0.192 0.808 26 H 0.162 0.838 27 H 0.140 0.860 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.370 3.528 -6.406 7.323 hybrid contribution 0.558 -0.318 -1.464 1.599 sum 0.188 3.209 -7.871 8.502 Atomic orbital electron populations 1.21768 0.74868 1.03298 1.03731 1.48357 1.06295 1.03412 1.57487 1.77203 1.01858 1.08329 1.26484 1.23729 0.94989 0.95396 1.00925 1.21081 0.96774 0.93845 1.17292 1.21157 0.91102 0.90109 0.98420 1.20866 0.92385 0.85779 0.98192 0.92857 1.62726 1.49464 1.12349 1.04635 1.22907 0.99295 0.90074 0.95721 1.22677 0.98391 1.00963 0.93878 1.19607 0.96130 0.93067 0.88824 0.95572 1.21971 0.92881 1.45336 1.03498 0.93380 1.25744 1.05237 0.94504 0.92746 1.70746 1.02419 1.44051 1.36985 0.83561 0.74232 0.76939 0.75700 1.21427 1.21531 1.20867 0.90462 0.90198 0.89800 0.80756 0.83763 0.85969 0.91489 0.94228 0.93754 0.90251 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.67 11.27 59.85 0.67 2.35 16 2 N -0.37 -7.24 4.01 -63.88 -0.26 -7.49 16 3 N -0.32 -6.14 12.58 30.63 0.39 -5.76 16 4 C 0.03 0.61 12.03 -17.36 -0.21 0.40 16 5 C -0.26 -4.98 10.30 -40.01 -0.41 -5.39 16 6 C 0.12 2.43 5.78 -82.27 -0.48 1.96 16 7 C 0.14 2.86 3.17 -67.80 -0.22 2.64 16 8 H 0.05 1.10 6.26 -51.93 -0.33 0.77 16 9 N -0.66 -12.08 6.78 -104.34 -0.71 -12.78 16 10 C 0.05 0.91 7.55 -1.90 -0.01 0.90 16 11 C -0.12 -2.69 5.39 -24.87 -0.13 -2.83 16 12 C 0.04 1.04 2.21 -90.41 -0.20 0.84 16 13 H 0.03 0.72 7.58 -51.93 -0.39 0.32 16 14 C -0.60 -15.63 8.53 -34.44 -0.29 -15.93 16 15 H 0.05 1.24 7.35 -52.48 -0.39 0.85 16 16 C 0.02 0.62 5.08 -17.82 -0.09 0.53 16 17 N -0.91 -26.12 12.93 55.43 0.72 -25.41 16 18 Si 1.07 24.03 29.90 -169.99 -5.08 18.94 16 19 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 23 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.08 1.25 7.01 -51.93 -0.36 0.88 16 25 H 0.18 2.36 8.06 -52.49 -0.42 1.93 16 26 H 0.14 2.65 8.06 -52.49 -0.42 2.23 16 27 H 0.33 5.17 8.92 -39.29 -0.35 4.82 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.08 1.96 6.39 -51.93 -0.33 1.63 16 32 H 0.28 7.91 6.00 -40.82 -0.25 7.67 16 LS Contribution 265.19 15.07 4.00 4.00 Total: -1.00 -30.11 265.19 -6.47 -36.58 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.15 Total: 6.45 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -1.37 Total: -14.53 kcal Atomic # 7 Polarization: -51.57 SS G_CDS: 0.14 Total: -51.44 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.08 Total: 18.94 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.11 -6.47 -36.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260232629.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.305 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds