Wall clock time and date at job start Mon Mar 30 2020 02:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.40087 * 126.03579 * 2 1 4 4 C 1.30832 * 108.20628 * 179.97438 * 3 2 1 5 5 C 1.39880 * 108.20057 * 359.78019 * 4 3 2 6 6 C 1.34946 * 126.03679 * 179.97438 * 2 1 3 7 7 C 1.50693 * 126.12839 * 359.97438 * 6 2 1 8 8 H 1.09004 * 110.06519 * 26.21048 * 7 6 2 9 9 N 1.47905 * 109.91694 * 147.41636 * 7 6 2 10 10 C 1.48528 * 105.81966 * 144.68536 * 9 7 6 11 11 C 1.54943 * 103.22967 * 320.79102 * 10 9 7 12 12 C 1.53992 * 109.91902 * 265.00600 * 7 6 2 13 13 H 1.08997 * 110.39514 * 358.38352 * 12 7 6 14 14 C 1.50706 * 110.31122 * 120.50564 * 12 7 6 15 15 H 1.08005 * 119.99758 * 357.17105 * 14 12 7 16 16 C 1.37871 * 120.00102 * 177.16989 * 14 12 7 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47483 * 269.99808 * 18 16 14 20 20 H 1.48499 * 109.47134 * 30.00322 * 18 16 14 21 21 H 1.48507 * 109.46904 * 150.00145 * 18 16 14 22 22 H 1.08998 * 109.47032 * 270.02340 * 1 2 3 23 23 H 1.09002 * 109.47219 * 30.02158 * 1 2 3 24 24 H 1.09003 * 109.46635 * 150.01874 * 1 2 3 25 25 H 1.08000 * 125.90141 * 180.02562 * 4 3 2 26 26 H 1.08002 * 126.03924 * 180.23205 * 5 4 3 27 27 H 1.00897 * 110.99820 * 265.19601 * 9 7 6 28 28 H 1.09003 * 110.66946 * 202.35870 * 10 9 7 29 29 H 1.09004 * 110.67280 * 79.22513 * 10 9 7 30 30 H 1.08997 * 110.72376 * 279.06062 * 11 10 9 31 31 H 1.08997 * 110.87628 * 155.84001 * 11 10 9 32 32 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7322 0.0006 5 6 3.5437 -0.6665 0.0060 6 6 2.2590 -1.0912 0.0005 7 6 1.7974 -2.5257 0.0017 8 1 0.8083 -2.6007 -0.4501 9 7 2.7582 -3.3648 -0.7469 10 6 2.7907 -4.6712 -0.0411 11 6 2.7250 -4.2684 1.4536 12 6 1.7572 -3.0627 1.4444 13 1 2.0977 -2.2990 2.1436 14 6 0.3619 -3.5093 1.7977 15 1 -0.4419 -3.3820 1.0875 16 6 0.1114 -4.0804 3.0273 17 7 1.0901 -4.2350 3.8922 18 14 -1.6183 -4.6332 3.4654 19 1 -2.3464 -3.5136 4.1146 20 1 -2.3356 -5.0402 2.2304 21 1 -1.5479 -5.7856 4.3995 22 1 -0.3633 0.0004 1.0276 23 1 -0.3634 0.8898 -0.5142 24 1 -0.3633 -0.8902 -0.5136 25 1 4.4054 1.3711 0.0011 26 1 4.4211 -1.2963 0.0113 27 1 2.4674 -3.4793 -1.7063 28 1 3.7183 -5.2017 -0.2560 29 1 1.9272 -5.2778 -0.3143 30 1 3.7087 -3.9706 1.8165 31 1 2.3224 -5.0814 2.0577 32 1 1.9882 -3.9475 3.6648 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260232629.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:35 Heat of formation + Delta-G solvation = 54.988652 kcal Electronic energy + Delta-G solvation = -15402.281854 eV Core-core repulsion = 12977.324321 eV Total energy + Delta-G solvation = -2424.957533 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.17747 -39.42306 -35.08577 -34.16294 -31.99968 -30.68795 -28.89349 -27.58150 -26.16841 -23.07467 -21.96343 -21.62683 -20.31597 -19.14401 -17.85438 -16.98088 -16.31014 -15.92732 -15.67848 -15.41525 -14.70516 -14.52515 -13.89866 -13.62671 -13.55851 -13.22960 -13.18523 -12.80817 -12.67060 -12.34398 -12.02425 -11.93997 -11.81446 -11.58040 -10.64526 -10.45449 -10.12787 -9.57893 -9.34674 -8.59040 -6.35307 0.95739 1.52732 1.59869 1.65011 1.76514 1.97622 2.55486 3.18554 3.26355 3.73212 3.86128 3.95405 4.20659 4.33062 4.33759 4.38213 4.42188 4.60189 4.74473 4.84241 4.87469 5.02648 5.16482 5.29794 5.37533 5.49933 5.64726 5.84159 6.04207 6.11598 6.20241 6.45338 6.61226 6.81724 7.45686 8.78005 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028495 B = 0.010352 C = 0.008697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.409174 B = 2704.168569 C = 3218.818186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.383 5.383 3 N -0.334 5.334 4 C 0.040 3.960 5 C -0.268 4.268 6 C 0.098 3.902 7 C 0.151 3.849 8 H 0.052 0.948 9 N -0.655 5.655 10 C 0.060 3.940 11 C -0.118 4.118 12 C 0.041 3.959 13 H -0.017 1.017 14 C -0.601 4.601 15 H 0.051 0.949 16 C -0.026 4.026 17 N -0.935 5.935 18 Si 1.111 2.889 19 H -0.279 1.279 20 H -0.267 1.267 21 H -0.286 1.286 22 H 0.066 0.934 23 H 0.106 0.894 24 H 0.092 0.908 25 H 0.215 0.785 26 H 0.149 0.851 27 H 0.345 0.655 28 H 0.096 0.904 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.051 0.949 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.586 3.081 -9.389 9.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.166 5.166 3 N -0.156 5.156 4 C -0.144 4.144 5 C -0.298 4.298 6 C -0.030 4.030 7 C 0.039 3.961 8 H 0.070 0.930 9 N -0.285 5.285 10 C -0.069 4.069 11 C -0.157 4.157 12 C 0.021 3.979 13 H 0.001 0.999 14 C -0.639 4.639 15 H 0.069 0.931 16 C -0.225 4.225 17 N -0.572 5.572 18 Si 0.934 3.066 19 H -0.205 1.205 20 H -0.192 1.192 21 H -0.212 1.212 22 H 0.085 0.915 23 H 0.125 0.875 24 H 0.110 0.890 25 H 0.231 0.769 26 H 0.167 0.833 27 H 0.161 0.839 28 H 0.114 0.886 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.650 3.692 -7.939 8.780 hybrid contribution 0.695 -0.317 -0.997 1.256 sum 0.045 3.375 -8.936 9.552 Atomic orbital electron populations 1.21963 0.73514 1.05093 1.03598 1.48638 1.07322 1.03161 1.57458 1.77170 1.02652 1.08715 1.27074 1.24344 0.95623 0.95268 0.99205 1.21300 0.96583 0.94837 1.17054 1.21221 0.91985 0.90146 0.99682 1.20555 0.92991 0.86498 0.96010 0.92983 1.62701 1.48660 1.11654 1.05441 1.22852 1.00909 0.90381 0.92774 1.22525 0.97476 0.99308 0.96366 1.19497 0.95467 0.92650 0.90272 0.99862 1.22280 0.93963 1.44230 1.03412 0.93080 1.27084 1.07905 0.94459 0.93098 1.70857 1.02407 1.46000 1.37925 0.82999 0.70615 0.76670 0.76350 1.20471 1.19177 1.21219 0.91504 0.87533 0.88960 0.76896 0.83303 0.83882 0.88561 0.94072 0.94017 0.92991 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.06 11.27 127.77 1.44 4.50 16 2 N -0.38 -14.50 4.01 -356.02 -1.43 -15.93 16 3 N -0.33 -12.45 12.58 -57.02 -0.72 -13.16 16 4 C 0.04 1.34 12.03 85.24 1.03 2.36 16 5 C -0.27 -9.90 10.30 21.99 0.23 -9.68 16 6 C 0.10 3.89 5.78 41.40 0.24 4.13 16 7 C 0.15 6.08 3.17 44.31 0.14 6.22 16 8 H 0.05 2.09 6.26 -2.39 -0.01 2.07 16 9 N -0.65 -22.52 6.78 -484.02 -3.28 -25.80 16 10 C 0.06 2.12 7.55 86.65 0.65 2.77 16 11 C -0.12 -5.32 5.39 31.80 0.17 -5.15 16 12 C 0.04 1.99 2.21 -10.66 -0.02 1.97 16 13 H -0.02 -0.95 7.58 -2.39 -0.02 -0.97 16 14 C -0.60 -31.56 8.53 25.60 0.22 -31.34 16 15 H 0.05 2.60 7.35 -2.91 -0.02 2.58 16 16 C -0.03 -1.44 5.08 84.65 0.43 -1.01 16 17 N -0.93 -55.22 12.93 21.45 0.28 -54.94 16 18 Si 1.11 48.05 29.90 68.60 2.05 50.10 16 19 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.27 -10.50 7.11 99.48 0.71 -9.80 16 21 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 22 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 23 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 24 H 0.09 2.64 7.01 -2.39 -0.02 2.62 16 25 H 0.21 5.08 8.06 -2.91 -0.02 5.05 16 26 H 0.15 5.25 8.06 -2.91 -0.02 5.23 16 27 H 0.34 9.96 8.92 -89.70 -0.80 9.16 16 28 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 29 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 2.62 6.39 -2.39 -0.02 2.60 16 32 H 0.26 15.75 6.00 -92.71 -0.56 15.19 16 Total: -1.00 -64.88 265.19 1.96 -62.92 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.53 Total: 22.03 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 4.52 Total: -25.21 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -5.15 Total: -109.84 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.05 Total: 50.10 kcal Total: -64.88 1.96 -62.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260232629.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.909 kcal (2) G-P(sol) polarization free energy of solvation -64.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds