Wall clock time and date at job start Mon Mar 30 2020 02:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.39854 * 125.70240 * 2 1 4 4 C 1.30260 * 109.53957 * 180.20456 * 3 2 1 5 5 C 1.50705 * 125.87256 * 179.84128 * 4 3 2 6 6 C 1.53788 * 113.61055 * 38.83374 * 5 4 3 7 7 C 1.53954 * 87.01869 * 220.04868 * 6 5 4 8 8 C 1.53781 * 113.61387 * 301.22950 * 5 4 3 9 9 C 1.41805 * 108.25813 * 359.58684 * 4 3 2 10 10 C 1.41184 * 126.63634 * 180.26420 * 9 4 3 11 11 H 1.07997 * 120.00433 * 326.51678 * 10 9 4 12 12 C 1.39561 * 120.00089 * 146.51747 * 10 9 4 13 13 N 1.31195 * 119.99985 * 340.84399 * 12 10 9 14 14 Si 1.86799 * 120.00031 * 160.84395 * 12 10 9 15 15 H 1.48495 * 109.46966 * 59.99898 * 14 12 10 16 16 H 1.48500 * 109.46891 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47180 * 300.00071 * 14 12 10 18 18 C 1.35157 * 125.70230 * 179.74706 * 2 1 3 19 19 N 1.37730 * 126.56267 * 359.97438 * 18 2 1 20 20 H 1.09005 * 109.47070 * 270.25918 * 1 2 3 21 21 H 1.09004 * 109.47153 * 30.25672 * 1 2 3 22 22 H 1.09003 * 109.47388 * 150.25977 * 1 2 3 23 23 H 1.08992 * 112.85250 * 170.02425 * 5 4 3 24 24 H 1.09001 * 113.61298 * 334.56574 * 6 5 4 25 25 H 1.08995 * 113.61229 * 105.46455 * 6 5 4 26 26 H 1.09003 * 113.53117 * 270.81255 * 7 6 5 27 27 H 1.08996 * 113.74512 * 139.94530 * 7 6 5 28 28 H 1.09002 * 113.60870 * 254.52341 * 8 5 4 29 29 H 1.08998 * 113.61725 * 25.42850 * 8 5 4 30 30 H 0.96992 * 120.00293 * 176.87154 * 13 12 10 31 31 H 0.96995 * 120.00237 * 172.09171 * 19 18 2 32 32 H 0.97009 * 119.99918 * 352.09593 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2811 1.1357 0.0000 4 6 3.5322 0.7731 -0.0044 5 6 4.7203 1.7002 -0.0093 6 6 4.5339 2.9450 0.8743 7 6 5.2342 3.7426 -0.2409 8 6 4.7521 2.6544 -1.2148 9 6 3.5841 -0.6440 0.0022 10 6 4.7471 -1.4445 0.0056 11 1 5.6340 -1.1105 -0.5122 12 6 4.7505 -2.6674 0.6781 13 7 3.8496 -2.9116 1.6000 14 14 6.0380 -3.9564 0.2657 15 1 7.3921 -3.4028 0.5208 16 1 5.8257 -5.1570 1.1135 17 1 5.9194 -4.3344 -1.1655 18 6 2.2537 -1.0975 0.0048 19 7 1.8341 -2.4094 0.0111 20 1 -0.3633 0.0046 1.0277 21 1 -0.3634 0.8877 -0.5178 22 1 -0.3634 -0.8923 -0.5098 23 1 5.6632 1.1808 0.1615 24 1 3.4905 3.2239 1.0212 25 1 5.0983 2.9076 1.8060 26 1 6.3181 3.7825 -0.1325 27 1 4.7909 4.7211 -0.4254 28 1 5.4926 2.3827 -1.9672 29 1 3.7685 2.8537 -1.6401 30 1 3.8236 -3.7779 2.0353 31 1 2.4788 -3.1253 -0.1013 32 1 0.8938 -2.6173 0.1280 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260344489.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:41 Heat of formation + Delta-G solvation = 93.378939 kcal Electronic energy + Delta-G solvation = -15253.049338 eV Core-core repulsion = 12829.756532 eV Total energy + Delta-G solvation = -2423.292805 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.50699 -37.58671 -33.66213 -32.78185 -31.04428 -27.85636 -26.75349 -24.90384 -24.57502 -23.09771 -19.65201 -19.32249 -17.78113 -16.68974 -15.95118 -14.81099 -14.68876 -14.41138 -14.18852 -13.96170 -12.95876 -12.29744 -12.15131 -12.05560 -11.74780 -11.59348 -11.34916 -11.02492 -10.94661 -10.35085 -10.07591 -9.85085 -9.82447 -9.62688 -9.23642 -8.94188 -8.46127 -7.27396 -6.29952 -5.91498 -3.66316 3.23493 3.30751 3.35722 3.57390 3.81347 4.35383 4.40910 5.24877 5.31275 5.35411 5.45928 5.49303 5.61238 5.85564 5.94687 5.98257 6.12763 6.36851 6.41346 6.46232 6.48520 6.62711 6.80560 7.11358 7.34596 7.50691 7.66310 8.00979 8.20921 8.71486 9.00082 9.12038 9.36846 9.49202 9.67846 10.85458 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022849 B = 0.012005 C = 0.008435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.118882 B = 2331.752163 C = 3318.532427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.414 5.414 3 N -0.352 5.352 4 C 0.061 3.939 5 C -0.010 4.010 6 C -0.129 4.129 7 C -0.144 4.144 8 C -0.128 4.128 9 C -0.094 4.094 10 C -0.431 4.431 11 H 0.063 0.937 12 C 0.056 3.944 13 N -0.841 5.841 14 Si 0.883 3.117 15 H -0.274 1.274 16 H -0.288 1.288 17 H -0.275 1.275 18 C 0.291 3.709 19 N -0.830 5.830 20 H 0.049 0.951 21 H 0.071 0.929 22 H 0.063 0.937 23 H 0.100 0.900 24 H 0.082 0.918 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.262 0.738 31 H 0.411 0.589 32 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 4.192 -2.837 5.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.206 5.206 3 N -0.178 5.178 4 C -0.102 4.102 5 C -0.030 4.030 6 C -0.167 4.167 7 C -0.181 4.181 8 C -0.166 4.166 9 C -0.109 4.109 10 C -0.467 4.467 11 H 0.081 0.919 12 C -0.151 4.151 13 N -0.476 5.476 14 Si 0.710 3.290 15 H -0.199 1.199 16 H -0.214 1.214 17 H -0.201 1.201 18 C 0.067 3.933 19 N -0.380 5.380 20 H 0.067 0.933 21 H 0.090 0.910 22 H 0.082 0.918 23 H 0.118 0.882 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.245 0.755 32 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -3.365 5.079 -2.662 6.649 hybrid contribution 0.780 -2.042 0.088 2.188 sum -2.585 3.037 -2.574 4.747 Atomic orbital electron populations 1.21260 0.77934 1.02052 1.00958 1.47417 1.03988 1.03468 1.65707 1.76383 1.01931 1.05866 1.33649 1.21698 0.91616 0.94071 1.02800 1.20629 0.95309 0.91459 0.95599 1.22938 1.00874 0.96236 0.96650 1.22859 0.99790 0.97475 0.98008 1.22913 1.01111 0.96135 0.96480 1.16974 0.90171 0.89774 1.13944 1.18220 0.97361 1.02176 1.28940 0.91914 1.25432 0.96275 0.99299 0.94054 1.70069 1.35032 1.22183 1.20292 0.86779 0.82604 0.80920 0.78671 1.19886 1.21361 1.20055 1.18410 0.89883 0.80569 1.04426 1.41030 1.08857 1.03222 1.84905 0.93272 0.91007 0.91808 0.88160 0.89904 0.92266 0.90777 0.92281 0.92177 0.90286 0.92779 0.75450 0.80884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.08 11.22 59.84 0.67 2.75 16 2 N -0.41 -9.61 4.00 -66.45 -0.27 -9.88 16 3 N -0.35 -8.61 12.05 33.97 0.41 -8.20 16 4 C 0.06 1.51 6.32 -81.89 -0.52 1.00 16 5 C -0.01 -0.20 4.09 -90.95 -0.37 -0.57 16 6 C -0.13 -2.33 7.63 -25.82 -0.20 -2.53 16 7 C -0.14 -2.19 8.09 -25.83 -0.21 -2.40 16 8 C -0.13 -2.26 7.63 -25.92 -0.20 -2.46 16 9 C -0.09 -2.55 5.58 -106.54 -0.59 -3.15 16 10 C -0.43 -11.87 8.84 -37.97 -0.34 -12.20 16 11 H 0.06 1.70 7.87 -52.49 -0.41 1.28 16 12 C 0.06 1.47 4.33 -17.33 -0.07 1.40 16 13 N -0.84 -22.64 10.71 55.53 0.59 -22.05 16 14 Si 0.88 19.94 29.60 -169.99 -5.03 14.90 16 15 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 16 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 C 0.29 7.34 7.52 -153.29 -1.15 6.19 16 19 N -0.83 -18.42 7.99 31.66 0.25 -18.17 16 20 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 22 H 0.06 0.94 7.59 -51.93 -0.39 0.54 16 23 H 0.10 2.14 7.80 -51.93 -0.40 1.73 16 24 H 0.08 1.58 7.78 -51.93 -0.40 1.18 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.46 8.09 -51.93 -0.42 1.04 16 30 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.41 9.52 6.48 -40.82 -0.26 9.26 16 32 H 0.37 6.81 8.16 -40.82 -0.33 6.48 16 LS Contribution 267.87 15.07 4.04 4.04 Total: -1.00 -30.59 267.87 -7.29 -37.88 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -4.31 Total: 13.44 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -2.98 Total: -11.97 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.99 Total: -58.29 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.59 -7.29 -37.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260344489.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.261 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds