Wall clock time and date at job start Mon Mar 30 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40067 * 126.03783 * 2 1 4 4 C 1.30835 * 108.38650 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.83817 * 179.97438 * 4 3 2 6 6 C 1.53002 * 117.49571 * 8.74884 * 5 4 3 7 7 C 1.53004 * 117.49933 * 300.08890 * 5 4 3 8 8 C 1.39777 * 108.32793 * 359.97438 * 4 3 2 9 9 C 1.50701 * 126.09788 * 180.26417 * 8 4 3 10 10 C 1.50700 * 109.46821 * 269.71587 * 9 8 4 11 11 H 1.07998 * 120.00129 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99895 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00200 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00090 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46947 * 59.99571 * 14 12 10 16 16 H 1.48499 * 109.47239 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47109 * 299.99783 * 14 12 10 18 18 C 1.35245 * 126.04488 * 179.97438 * 2 1 3 19 19 N 1.39208 * 126.22508 * 0.02562 * 18 2 1 20 20 H 1.09002 * 109.47426 * 270.00175 * 1 2 3 21 21 H 1.08995 * 109.47600 * 30.01081 * 1 2 3 22 22 H 1.09006 * 109.46790 * 150.00418 * 1 2 3 23 23 H 1.08995 * 115.55198 * 154.41980 * 5 4 3 24 24 H 1.08996 * 117.49779 * 0.02562 * 6 5 4 25 25 H 1.09002 * 117.49591 * 145.01809 * 6 5 4 26 26 H 1.08992 * 117.49846 * 214.97394 * 7 5 4 27 27 H 1.08997 * 117.49473 * 359.97438 * 7 5 4 28 28 H 1.09006 * 109.46784 * 29.70904 * 9 8 4 29 29 H 1.08999 * 109.47164 * 149.71298 * 9 8 4 30 30 H 0.96993 * 120.00179 * 179.97438 * 13 12 10 31 31 H 0.96997 * 120.00264 * 179.97438 * 19 18 2 32 32 H 0.97005 * 119.99476 * 359.97438 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1326 0.0000 4 6 3.5358 0.7359 0.0006 5 6 4.7471 1.6326 0.0002 6 6 4.5167 3.1311 0.2056 7 6 4.9103 2.5990 -1.1747 8 6 3.5523 -0.6618 0.0015 9 6 4.7803 -1.5352 0.0080 10 6 5.1924 -1.8330 -1.4106 11 1 4.6219 -1.4304 -2.2345 12 6 6.2979 -2.6194 -1.6568 13 7 6.9930 -3.1092 -0.6536 14 14 6.8083 -2.9891 -3.4153 15 1 7.1080 -1.7175 -4.1213 16 1 8.0192 -3.8486 -3.4089 17 1 5.7036 -3.6944 -4.1135 18 6 2.2608 -1.0935 0.0005 19 7 1.8368 -2.4195 0.0006 20 1 -0.3634 0.0000 1.0277 21 1 -0.3634 0.8898 -0.5140 22 1 -0.3633 -0.8901 -0.5138 23 1 5.6525 1.1997 0.4253 24 1 3.4891 3.4684 0.3413 25 1 5.2708 3.6842 0.7655 26 1 5.9232 2.8021 -1.5222 27 1 4.1419 2.5859 -1.9476 28 1 5.5913 -1.0180 0.5210 29 1 4.5596 -2.4686 0.5258 30 1 7.7704 -3.6627 -0.8267 31 1 2.4892 -3.1373 0.0006 32 1 0.8889 -2.6256 0.0007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260358901.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:30 Heat of formation + Delta-G solvation = 96.546955 kcal Electronic energy + Delta-G solvation = -14955.955091 eV Core-core repulsion = 12532.799661 eV Total energy + Delta-G solvation = -2423.155430 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.48571 -36.59117 -33.81652 -33.32725 -32.05623 -29.29573 -26.86496 -25.62646 -22.92040 -22.01777 -21.83547 -19.16314 -18.66206 -16.64653 -16.13443 -15.54177 -15.00181 -14.75376 -14.49424 -14.09890 -13.20070 -12.71511 -12.57174 -12.11082 -11.60751 -11.50544 -11.05535 -10.99722 -10.75507 -10.66253 -10.46739 -10.06836 -9.75196 -9.74081 -9.28632 -9.17173 -8.26976 -7.82369 -6.64319 -5.85890 -3.89730 2.76336 3.04001 3.38440 3.42702 3.45786 3.72787 4.38858 4.54200 4.62811 4.96039 5.24693 5.38000 5.44049 5.47194 5.55809 5.63310 5.81927 6.09614 6.29291 6.34164 6.59566 6.63463 6.77862 6.97828 7.22220 7.60252 7.79760 7.94603 8.08946 8.13415 8.28073 8.59104 8.75232 9.15863 9.73047 11.20620 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022734 B = 0.010269 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.317552 B = 2725.881541 C = 3504.987634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.414 5.414 3 N -0.331 5.331 4 C 0.133 3.867 5 C -0.060 4.060 6 C -0.178 4.178 7 C -0.161 4.161 8 C -0.248 4.248 9 C 0.100 3.900 10 C -0.496 4.496 11 H 0.051 0.949 12 C 0.055 3.945 13 N -0.899 5.899 14 Si 0.887 3.113 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.280 1.280 18 C 0.341 3.659 19 N -0.856 5.856 20 H 0.060 0.940 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.124 0.876 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.023 0.977 29 H 0.014 0.986 30 H 0.259 0.741 31 H 0.420 0.580 32 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.647 5.384 1.677 11.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.203 5.203 3 N -0.155 5.155 4 C -0.031 4.031 5 C -0.080 4.080 6 C -0.215 4.215 7 C -0.200 4.200 8 C -0.264 4.264 9 C 0.062 3.938 10 C -0.535 4.535 11 H 0.069 0.931 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.715 3.285 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.206 1.206 18 C 0.118 3.882 19 N -0.407 5.407 20 H 0.079 0.921 21 H 0.099 0.901 22 H 0.090 0.910 23 H 0.142 0.858 24 H 0.114 0.886 25 H 0.109 0.891 26 H 0.113 0.887 27 H 0.108 0.892 28 H 0.041 0.959 29 H 0.032 0.968 30 H 0.069 0.931 31 H 0.252 0.748 32 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -10.397 6.334 1.720 12.296 hybrid contribution 0.526 -1.479 -1.094 1.913 sum -9.871 4.855 0.626 11.019 Atomic orbital electron populations 1.21477 0.76242 1.03190 1.01913 1.47927 1.05027 1.02947 1.64447 1.77120 1.00990 1.05336 1.32058 1.20844 0.91390 0.92996 0.97866 1.20207 0.95566 0.88592 1.03636 1.22958 1.02451 0.96198 0.99922 1.22874 1.02331 1.03163 0.91593 1.19848 0.93700 0.93369 1.19456 1.17415 0.88022 0.91949 0.96369 1.21188 1.10547 1.29390 0.92397 0.93106 1.24993 0.96618 0.96340 0.96515 1.69943 1.18648 1.35080 1.30264 0.86740 0.77760 0.78211 0.85754 1.20333 1.21475 1.20578 1.17685 0.89944 0.81254 0.99327 1.41443 1.09329 1.02567 1.87378 0.92127 0.90052 0.91031 0.85802 0.88606 0.89082 0.88656 0.89150 0.95877 0.96810 0.93141 0.74752 0.78717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.44 11.28 59.85 0.68 2.12 16 2 N -0.41 -7.68 4.02 -67.24 -0.27 -7.95 16 3 N -0.33 -6.86 12.14 33.65 0.41 -6.45 16 4 C 0.13 2.91 6.74 -82.44 -0.56 2.36 16 5 C -0.06 -1.16 6.00 -91.77 -0.55 -1.71 16 6 C -0.18 -2.81 10.14 -26.69 -0.27 -3.08 16 7 C -0.16 -2.74 10.24 -26.69 -0.27 -3.02 16 8 C -0.25 -5.79 5.32 -104.79 -0.56 -6.34 16 9 C 0.10 2.64 5.08 -29.03 -0.15 2.49 16 10 C -0.50 -14.03 9.09 -34.44 -0.31 -14.34 16 11 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 13 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 14 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 C 0.34 6.90 7.94 -153.41 -1.22 5.68 16 19 N -0.86 -14.04 9.10 31.10 0.28 -13.75 16 20 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.07 0.73 7.50 -51.93 -0.39 0.34 16 23 H 0.12 2.46 7.51 -51.93 -0.39 2.07 16 24 H 0.10 1.54 7.89 -51.93 -0.41 1.13 16 25 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 26 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 27 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 28 H 0.02 0.64 7.44 -51.93 -0.39 0.25 16 29 H 0.01 0.37 7.61 -51.93 -0.40 -0.02 16 30 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.42 7.20 8.20 -40.82 -0.33 6.87 16 32 H 0.39 4.79 8.09 -40.82 -0.33 4.46 16 LS Contribution 277.68 15.07 4.18 4.18 Total: -1.00 -32.63 277.68 -7.28 -39.90 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -4.29 Total: 7.47 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -3.31 Total: -14.38 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 1.16 Total: -54.00 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.63 -7.28 -39.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260358901.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.450 kcal (2) G-P(sol) polarization free energy of solvation -32.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds