Wall clock time and date at job start Mon Mar 30 2020 02:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40067 * 126.03783 * 2 1 4 4 C 1.30835 * 108.38650 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.83817 * 179.97438 * 4 3 2 6 6 C 1.53002 * 117.49571 * 8.74884 * 5 4 3 7 7 C 1.53004 * 117.49933 * 300.08890 * 5 4 3 8 8 C 1.39777 * 108.32793 * 359.97438 * 4 3 2 9 9 C 1.50701 * 126.09788 * 180.26417 * 8 4 3 10 10 C 1.50700 * 109.46821 * 269.71587 * 9 8 4 11 11 H 1.07998 * 120.00129 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99895 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00200 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00090 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46947 * 59.99571 * 14 12 10 16 16 H 1.48499 * 109.47239 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47109 * 299.99783 * 14 12 10 18 18 C 1.35245 * 126.04488 * 179.97438 * 2 1 3 19 19 N 1.39208 * 126.22508 * 0.02562 * 18 2 1 20 20 H 1.09002 * 109.47426 * 270.00175 * 1 2 3 21 21 H 1.08995 * 109.47600 * 30.01081 * 1 2 3 22 22 H 1.09006 * 109.46790 * 150.00418 * 1 2 3 23 23 H 1.08995 * 115.55198 * 154.41980 * 5 4 3 24 24 H 1.08996 * 117.49779 * 0.02562 * 6 5 4 25 25 H 1.09002 * 117.49591 * 145.01809 * 6 5 4 26 26 H 1.08992 * 117.49846 * 214.97394 * 7 5 4 27 27 H 1.08997 * 117.49473 * 359.97438 * 7 5 4 28 28 H 1.09006 * 109.46784 * 29.70904 * 9 8 4 29 29 H 1.08999 * 109.47164 * 149.71298 * 9 8 4 30 30 H 0.96993 * 120.00179 * 179.97438 * 13 12 10 31 31 H 0.96997 * 120.00264 * 179.97438 * 19 18 2 32 32 H 0.97005 * 119.99476 * 359.97438 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1326 0.0000 4 6 3.5358 0.7359 0.0006 5 6 4.7471 1.6326 0.0002 6 6 4.5167 3.1311 0.2056 7 6 4.9103 2.5990 -1.1747 8 6 3.5523 -0.6618 0.0015 9 6 4.7803 -1.5352 0.0080 10 6 5.1924 -1.8330 -1.4106 11 1 4.6219 -1.4304 -2.2345 12 6 6.2979 -2.6194 -1.6568 13 7 6.9930 -3.1092 -0.6536 14 14 6.8083 -2.9891 -3.4153 15 1 7.1080 -1.7175 -4.1213 16 1 8.0192 -3.8486 -3.4089 17 1 5.7036 -3.6944 -4.1135 18 6 2.2608 -1.0935 0.0005 19 7 1.8368 -2.4195 0.0006 20 1 -0.3634 0.0000 1.0277 21 1 -0.3634 0.8898 -0.5140 22 1 -0.3633 -0.8901 -0.5138 23 1 5.6525 1.1997 0.4253 24 1 3.4891 3.4684 0.3413 25 1 5.2708 3.6842 0.7655 26 1 5.9232 2.8021 -1.5222 27 1 4.1419 2.5859 -1.9476 28 1 5.5913 -1.0180 0.5210 29 1 4.5596 -2.4686 0.5258 30 1 7.7704 -3.6627 -0.8267 31 1 2.4892 -3.1373 0.0006 32 1 0.8889 -2.6256 0.0007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260358901.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:30 Heat of formation + Delta-G solvation = 75.472597 kcal Electronic energy + Delta-G solvation = -14956.868944 eV Core-core repulsion = 12532.799661 eV Total energy + Delta-G solvation = -2424.069283 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.02332 -37.98022 -35.57205 -34.98879 -33.71583 -31.09001 -28.34231 -27.32427 -24.76450 -23.57351 -23.14976 -20.76533 -20.16529 -18.34628 -18.03232 -17.03377 -16.46481 -16.39077 -16.08447 -15.60251 -14.67949 -14.30687 -14.06291 -13.61366 -13.31534 -13.26527 -12.75074 -12.62627 -12.38239 -12.31758 -12.10949 -11.79484 -11.43927 -11.41007 -11.12443 -10.86601 -10.46656 -9.28614 -8.36867 -7.94675 -6.16310 1.23123 1.41848 1.44154 1.51970 1.67770 2.07251 2.49889 3.04725 3.19912 3.22825 3.72402 3.92592 4.10440 4.30099 4.44987 4.45748 4.64240 4.74906 4.82868 4.98827 5.01087 5.22886 5.32748 5.36714 5.49843 5.75026 5.88427 5.93989 6.07336 6.42115 6.63647 6.90465 6.95096 7.26297 7.50731 9.01681 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022734 B = 0.010269 C = 0.007987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.317552 B = 2725.881541 C = 3504.987634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.409 5.409 3 N -0.340 5.340 4 C 0.122 3.878 5 C -0.098 4.098 6 C -0.145 4.145 7 C -0.157 4.157 8 C -0.301 4.301 9 C 0.119 3.881 10 C -0.506 4.506 11 H 0.039 0.961 12 C 0.007 3.993 13 N -0.930 5.930 14 Si 0.952 3.048 15 H -0.274 1.274 16 H -0.282 1.282 17 H -0.271 1.271 18 C 0.351 3.649 19 N -0.840 5.840 20 H 0.082 0.918 21 H 0.093 0.907 22 H 0.099 0.901 23 H 0.106 0.894 24 H 0.095 0.905 25 H 0.119 0.881 26 H 0.111 0.889 27 H 0.082 0.918 28 H -0.008 1.008 29 H -0.005 1.005 30 H 0.262 0.738 31 H 0.417 0.583 32 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.050 5.877 0.821 12.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.199 5.199 3 N -0.164 5.164 4 C -0.041 4.041 5 C -0.118 4.118 6 C -0.182 4.182 7 C -0.195 4.195 8 C -0.317 4.317 9 C 0.081 3.919 10 C -0.544 4.544 11 H 0.058 0.942 12 C -0.190 4.190 13 N -0.571 5.571 14 Si 0.778 3.222 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.196 1.196 18 C 0.124 3.876 19 N -0.392 5.392 20 H 0.100 0.900 21 H 0.112 0.888 22 H 0.117 0.883 23 H 0.124 0.876 24 H 0.114 0.886 25 H 0.137 0.863 26 H 0.129 0.871 27 H 0.101 0.899 28 H 0.010 0.990 29 H 0.014 0.986 30 H 0.071 0.929 31 H 0.249 0.751 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -11.861 6.831 0.864 13.714 hybrid contribution 0.866 -1.653 -0.779 2.022 sum -10.995 5.177 0.085 12.153 Atomic orbital electron populations 1.21972 0.72655 1.05249 1.03993 1.48293 1.06844 1.01689 1.63095 1.77027 1.00620 1.06379 1.32352 1.21097 0.92461 0.92785 0.97797 1.20234 0.94618 0.90436 1.06488 1.23008 1.03248 0.93174 0.98772 1.22934 1.03048 1.01919 0.91607 1.19702 0.93982 0.94142 1.23894 1.17030 0.88767 0.91282 0.94843 1.21358 1.10722 1.29382 0.92971 0.94223 1.25770 0.96518 0.96064 1.00660 1.70063 1.19066 1.35619 1.32399 0.85702 0.77665 0.78142 0.80702 1.19933 1.20753 1.19637 1.17680 0.89595 0.82800 0.97502 1.41394 1.10653 1.01012 1.86188 0.89977 0.88822 0.88265 0.87599 0.88606 0.86267 0.87089 0.89926 0.98960 0.98631 0.92947 0.75133 0.76165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.23 11.28 127.77 1.44 3.67 16 2 N -0.41 -14.51 4.02 -366.65 -1.47 -15.99 16 3 N -0.34 -13.81 12.14 -47.44 -0.58 -14.39 16 4 C 0.12 5.43 6.74 43.08 0.29 5.72 16 5 C -0.10 -3.86 6.00 -11.54 -0.07 -3.93 16 6 C -0.14 -4.38 10.14 30.62 0.31 -4.07 16 7 C -0.16 -5.24 10.24 30.62 0.31 -4.93 16 8 C -0.30 -14.38 5.32 -19.97 -0.11 -14.49 16 9 C 0.12 6.52 5.08 29.10 0.15 6.67 16 10 C -0.51 -29.29 9.09 25.60 0.23 -29.06 16 11 H 0.04 2.34 7.74 -2.91 -0.02 2.31 16 12 C 0.01 0.41 5.46 84.66 0.46 0.88 16 13 N -0.93 -56.10 13.29 21.45 0.28 -55.81 16 14 Si 0.95 44.95 29.54 68.60 2.03 46.98 16 15 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 17 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 18 C 0.35 13.96 7.94 131.43 1.04 15.01 16 19 N -0.84 -26.47 9.10 -55.50 -0.51 -26.97 16 20 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 21 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 22 H 0.10 1.63 7.50 -2.38 -0.02 1.62 16 23 H 0.11 4.46 7.51 -2.39 -0.02 4.44 16 24 H 0.10 2.92 7.89 -2.39 -0.02 2.90 16 25 H 0.12 2.91 8.14 -2.39 -0.02 2.90 16 26 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 27 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 28 H -0.01 -0.47 7.44 -2.38 -0.02 -0.49 16 29 H 0.00 -0.26 7.61 -2.39 -0.02 -0.28 16 30 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 31 H 0.42 14.13 8.20 -92.71 -0.76 13.37 16 32 H 0.41 9.06 8.09 -92.70 -0.75 8.31 16 Total: -1.00 -71.34 277.68 3.45 -67.89 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -0.37 Total: 22.82 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 4.07 Total: -24.54 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -2.27 Total: -113.16 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.34 3.45 -67.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260358901.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.363 kcal (2) G-P(sol) polarization free energy of solvation -71.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds