Wall clock time and date at job start Mon Mar 30 2020 03:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86791 * 119.99703 * 2 1 4 4 H 1.48504 * 109.47266 * 267.04740 * 3 2 1 5 5 H 1.48506 * 109.47381 * 27.04930 * 3 2 1 6 6 H 1.48502 * 109.47005 * 147.04787 * 3 2 1 7 7 C 1.37879 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00343 * 11.71206 * 7 2 1 9 9 C 1.50704 * 119.99599 * 191.70229 * 7 2 1 10 10 N 1.46900 * 108.81607 * 306.70508 * 9 7 2 11 11 C 1.46893 * 110.99885 * 299.97712 * 10 9 7 12 12 C 1.53007 * 117.49605 * 226.93897 * 11 10 9 13 13 C 1.53004 * 117.49929 * 158.28194 * 11 10 9 14 14 C 1.51412 * 108.83941 * 188.33056 * 9 7 2 15 15 C 1.51276 * 112.84255 * 286.04906 * 14 9 7 16 16 C 1.51412 * 112.84895 * 296.98209 * 15 14 9 17 17 C 1.52133 * 112.27118 * 46.49035 * 16 15 14 18 18 H 1.08993 * 115.25828 * 129.96265 * 17 16 15 19 19 C 1.53687 * 116.28863 * 272.29565 * 17 16 15 20 20 C 1.51443 * 108.83972 * 65.18395 * 9 7 2 21 21 H 1.09004 * 114.10844 * 317.70186 * 20 9 7 22 22 H 0.96991 * 120.00188 * 0.02562 * 1 2 3 23 23 H 1.00898 * 110.99844 * 176.02177 * 10 9 7 24 24 H 1.08992 * 115.55566 * 12.60655 * 11 10 9 25 25 H 1.09003 * 117.49906 * 359.97438 * 12 11 10 26 26 H 1.08999 * 117.49954 * 145.02630 * 12 11 10 27 27 H 1.09003 * 117.50014 * 214.97967 * 13 11 10 28 28 H 1.09007 * 117.49503 * 359.97161 * 13 11 10 29 29 H 1.08998 * 108.80708 * 165.18727 * 14 9 7 30 30 H 1.08992 * 108.80971 * 46.92040 * 14 9 7 31 31 H 1.09006 * 108.80511 * 176.11432 * 15 14 9 32 32 H 1.08999 * 108.81054 * 57.85871 * 15 14 9 33 33 H 1.09004 * 108.92813 * 167.20638 * 16 15 14 34 34 H 1.09003 * 108.92152 * 285.86442 * 16 15 14 35 35 H 1.09001 * 117.54231 * 219.09282 * 19 17 16 36 36 H 1.09003 * 117.54551 * 4.28990 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5591 2.0104 -1.3982 5 1 1.4167 2.6699 0.6367 6 1 3.5141 1.4590 0.7616 7 6 2.0046 -1.1941 0.0005 8 1 1.4815 -2.1198 -0.1889 9 6 3.4881 -1.2075 0.2653 10 7 4.1429 -0.2723 -0.6593 11 6 3.9022 -0.6580 -2.0561 12 6 5.1057 -0.6778 -3.0008 13 6 4.0532 0.4268 -3.1245 14 6 4.0187 -2.6015 0.0047 15 6 3.6386 -3.5865 1.0880 16 6 4.2239 -3.2303 2.4383 17 6 4.0389 -1.7587 2.7768 18 1 3.6168 -1.5575 3.7613 19 6 5.1358 -0.8032 2.2813 20 6 3.7356 -0.7447 1.6859 21 1 3.1278 0.1080 1.9886 22 1 -0.4850 0.8399 -0.0004 23 1 5.1312 -0.2066 -0.4674 24 1 3.1296 -1.4113 -2.2095 25 1 6.0758 -0.4043 -2.5859 26 1 5.1245 -1.4439 -3.7759 27 1 3.3800 0.3869 -3.9809 28 1 4.3306 1.4268 -2.7908 29 1 5.1056 -2.5566 -0.0638 30 1 3.6231 -2.9558 -0.9471 31 1 3.9922 -4.5772 0.8020 32 1 2.5522 -3.6145 1.1722 33 1 3.7370 -3.8332 3.2049 34 1 5.2896 -3.4592 2.4330 35 1 5.4354 0.0078 2.9451 36 1 5.9298 -1.2239 1.6642 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260417482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:48 Heat of formation + Delta-G solvation = 52.549228 kcal Electronic energy + Delta-G solvation = -16264.385255 eV Core-core repulsion = 13942.862284 eV Total energy + Delta-G solvation = -2321.522971 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.43576 -36.76052 -33.47408 -32.38949 -31.51675 -27.64894 -25.62295 -22.49172 -22.16786 -21.77521 -20.60280 -19.56970 -17.84634 -16.19559 -15.79363 -14.97748 -14.64608 -14.18672 -13.71905 -13.11762 -12.85228 -12.51578 -12.37179 -12.09803 -11.72743 -11.36348 -10.97451 -10.73825 -10.62024 -10.38145 -10.21752 -9.97972 -9.74151 -9.66224 -9.55370 -9.23707 -8.88322 -8.69069 -8.34798 -7.06319 -5.95658 -4.02639 3.69607 3.73708 3.95190 4.42738 4.55448 4.77504 4.94966 5.24380 5.50378 5.54203 5.59280 5.62370 5.65189 5.80762 5.87206 5.94680 6.03979 6.10445 6.19381 6.21237 6.34937 6.41112 6.43786 6.54297 6.58597 6.64827 6.72255 6.80870 6.92713 7.02054 7.18766 7.28613 7.73389 7.99829 8.35247 8.66030 9.02388 9.70660 11.12666 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.022512 B = 0.015629 C = 0.012271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.458406 B = 1791.061893 C = 2281.275048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.081 3.919 3 Si 0.935 3.065 4 H -0.285 1.285 5 H -0.340 1.340 6 H -0.253 1.253 7 C -0.510 4.510 8 H 0.071 0.929 9 C 0.240 3.760 10 N -0.646 5.646 11 C 0.063 3.937 12 C -0.226 4.226 13 C -0.184 4.184 14 C -0.116 4.116 15 C -0.108 4.108 16 C -0.077 4.077 17 C -0.148 4.148 18 H 0.091 0.909 19 C -0.205 4.205 20 C -0.088 4.088 21 H 0.096 0.904 22 H 0.261 0.739 23 H 0.317 0.683 24 H 0.123 0.877 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.030 0.970 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.963 -3.042 0.312 10.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.123 4.123 3 Si 0.770 3.230 4 H -0.211 1.211 5 H -0.272 1.272 6 H -0.178 1.178 7 C -0.547 4.547 8 H 0.089 0.911 9 C 0.152 3.848 10 N -0.276 5.276 11 C -0.048 4.048 12 C -0.265 4.265 13 C -0.222 4.222 14 C -0.155 4.155 15 C -0.146 4.146 16 C -0.115 4.115 17 C -0.167 4.167 18 H 0.109 0.891 19 C -0.242 4.242 20 C -0.107 4.107 21 H 0.114 0.886 22 H 0.070 0.930 23 H 0.137 0.863 24 H 0.141 0.859 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.295 -2.510 0.341 9.634 hybrid contribution 0.936 0.287 -0.155 0.991 sum 10.231 -2.223 0.185 10.471 Atomic orbital electron populations 1.70020 1.07106 1.27327 1.49009 1.25078 0.94449 1.00434 0.92362 0.86070 0.78550 0.79747 0.78656 1.21146 1.27221 1.17839 1.20675 0.88781 0.94766 1.50499 0.91112 1.17832 0.95131 0.85621 0.86184 1.60663 1.14733 1.50849 1.01309 1.22279 0.97457 0.99247 0.85811 1.23445 0.94823 1.02842 1.05399 1.23045 1.01900 0.95231 1.02069 1.21388 0.97837 0.97764 0.98536 1.20719 1.02260 0.97257 0.94408 1.20478 0.99530 0.94106 0.97350 1.21939 1.03564 0.92088 0.99123 0.89092 1.23075 0.93484 1.02605 1.05081 1.22068 0.94705 0.98939 0.95016 0.88634 0.92996 0.86327 0.85935 0.89835 0.89779 0.89573 0.89429 0.95099 0.92314 0.93838 0.91137 0.92558 0.93230 0.90287 0.89904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 2 C 0.08 2.29 5.31 -17.82 -0.09 2.19 16 3 Si 0.93 23.79 23.65 -169.99 -4.02 19.77 16 4 H -0.28 -7.24 6.38 56.52 0.36 -6.88 16 5 H -0.34 -9.13 7.11 56.52 0.40 -8.73 16 6 H -0.25 -6.07 5.04 56.52 0.29 -5.79 16 7 C -0.51 -13.49 6.72 -34.44 -0.23 -13.72 16 8 H 0.07 2.06 7.66 -52.49 -0.40 1.66 16 9 C 0.24 5.19 0.28 -134.34 -0.04 5.16 16 10 N -0.65 -13.32 2.59 -95.83 -0.25 -13.57 16 11 C 0.06 1.23 4.28 -67.71 -0.29 0.94 16 12 C -0.23 -3.61 10.23 -26.69 -0.27 -3.88 16 13 C -0.18 -3.35 9.96 -26.69 -0.27 -3.61 16 14 C -0.12 -2.22 3.71 -28.40 -0.11 -2.32 16 15 C -0.11 -1.93 5.67 -28.40 -0.16 -2.09 16 16 C -0.08 -1.26 5.84 -27.98 -0.16 -1.43 16 17 C -0.15 -2.69 6.19 -91.21 -0.56 -3.25 16 18 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 19 C -0.21 -3.57 9.50 -26.75 -0.25 -3.83 16 20 C -0.09 -1.85 3.53 -92.29 -0.33 -2.18 16 21 H 0.10 2.25 5.42 -51.93 -0.28 1.97 16 22 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 23 H 0.32 5.97 8.23 -39.29 -0.32 5.64 16 24 H 0.12 2.63 6.28 -51.93 -0.33 2.31 16 25 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 28 H 0.09 1.65 7.93 -51.93 -0.41 1.24 16 29 H 0.03 0.54 7.87 -51.93 -0.41 0.13 16 30 H 0.06 1.16 6.84 -51.93 -0.36 0.80 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.41 7.51 -51.93 -0.39 1.02 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.36 7.88 -51.93 -0.41 0.95 16 LS Contribution 268.85 15.07 4.05 4.05 Total: -1.00 -28.86 268.85 -8.18 -37.04 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.97 Total: 7.30 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: -2.77 Total: -28.01 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.53 Total: -40.14 kcal Atomic # 14 Polarization: 23.79 SS G_CDS: -4.02 Total: 19.77 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.86 -8.18 -37.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260417482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.589 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds