Wall clock time and date at job start Mon Mar 30 2020 02:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40084 * 126.03570 * 2 1 4 4 C 1.30839 * 108.20209 * 180.02562 * 3 2 1 5 5 C 1.39872 * 108.20640 * 359.78635 * 4 3 2 6 6 C 1.50694 * 126.04142 * 180.23245 * 5 4 3 7 7 H 1.09004 * 109.46691 * 145.15014 * 6 5 4 8 8 N 1.46900 * 109.47552 * 25.15055 * 6 5 4 9 9 C 1.50701 * 109.47056 * 265.15108 * 6 5 4 10 10 H 1.08001 * 120.00329 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99703 * 180.02562 * 9 6 5 12 12 N 1.31513 * 120.00359 * 359.97438 * 11 9 6 13 13 Si 1.86808 * 119.99742 * 179.97438 * 11 9 6 14 14 H 1.48502 * 109.47070 * 89.99603 * 13 11 9 15 15 H 1.48496 * 109.47185 * 209.99654 * 13 11 9 16 16 H 1.48503 * 109.46781 * 329.99819 * 13 11 9 17 17 C 1.34945 * 126.03530 * 180.02562 * 2 1 3 18 18 C 1.50700 * 126.13269 * 359.94163 * 17 2 1 19 19 C 1.53002 * 117.49404 * 312.75677 * 18 17 2 20 20 C 1.52993 * 117.49970 * 244.13707 * 18 17 2 21 21 H 1.08998 * 109.47029 * 264.79254 * 1 2 3 22 22 H 1.09000 * 109.46765 * 24.79580 * 1 2 3 23 23 H 1.09006 * 109.46930 * 144.78821 * 1 2 3 24 24 H 1.08001 * 125.89775 * 179.97438 * 4 3 2 25 25 H 1.00890 * 111.00338 * 176.04352 * 8 6 5 26 26 H 1.00898 * 110.99681 * 300.00602 * 8 6 5 27 27 H 0.97001 * 120.00226 * 179.97438 * 12 11 9 28 28 H 1.08994 * 115.56402 * 98.43850 * 18 17 2 29 29 H 1.08999 * 117.49938 * 359.97438 * 19 18 17 30 30 H 1.09000 * 117.49882 * 145.01840 * 19 18 17 31 31 H 1.09002 * 117.50024 * 214.97425 * 20 18 17 32 32 H 1.08999 * 117.49914 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7321 -0.0006 5 6 3.5437 -0.6666 0.0040 6 6 4.7680 -1.5453 0.0100 7 1 4.5698 -2.4404 0.5997 8 7 5.8954 -0.8105 0.5991 9 6 5.1097 -1.9404 -1.4036 10 1 4.5009 -1.5905 -2.2242 11 6 6.1988 -2.7493 -1.6491 12 7 6.9399 -3.1758 -0.6498 13 14 6.6220 -3.2397 -3.4013 14 1 7.5481 -2.2368 -3.9860 15 1 7.2745 -4.5735 -3.3982 16 1 5.3795 -3.2982 -4.2126 17 6 2.2589 -1.0912 -0.0005 18 6 1.7974 -2.5258 0.0001 19 6 0.7048 -2.9159 0.9976 20 6 2.1456 -3.3794 1.2211 21 1 -0.3633 -0.0933 1.0234 22 1 -0.3633 0.9329 -0.4310 23 1 -0.3633 -0.8397 -0.5926 24 1 4.4054 1.3710 -0.0011 25 1 6.7113 -1.3992 0.6737 26 1 6.0988 0.0243 0.0701 27 1 7.7059 -3.7452 -0.8225 28 1 1.7899 -3.0179 -0.9724 29 1 0.3201 -2.1351 1.6536 30 1 -0.0214 -3.6647 0.6813 31 1 2.3673 -4.4332 1.0519 32 1 2.7089 -2.9035 2.0238 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260470826.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:38 Heat of formation + Delta-G solvation = 98.648989 kcal Electronic energy + Delta-G solvation = -15225.668160 eV Core-core repulsion = 12802.603881 eV Total energy + Delta-G solvation = -2423.064279 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.59205 -36.53513 -34.74576 -32.41294 -30.96107 -29.06232 -26.29875 -25.43958 -22.87182 -22.28987 -21.50526 -19.54359 -18.46750 -16.50257 -16.00083 -15.20957 -14.67326 -14.47093 -13.97283 -13.74470 -13.25128 -12.79359 -12.43623 -12.13994 -11.84550 -11.34492 -11.21814 -11.07270 -10.89933 -10.80892 -10.37376 -10.20392 -9.93033 -9.75744 -9.36441 -8.56442 -8.49796 -7.43253 -7.01002 -5.96900 -4.13162 2.58368 3.14429 3.26268 3.33683 3.37239 3.76587 4.12345 4.41679 4.96874 5.03866 5.21380 5.23389 5.36743 5.40621 5.61936 5.73475 5.82454 5.84904 6.22391 6.36746 6.45405 6.56312 6.64010 6.73020 7.12433 7.43967 7.77180 7.84503 7.87937 8.26584 8.49305 8.82403 9.08214 9.25238 9.58031 10.98642 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028990 B = 0.009708 C = 0.008852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.633098 B = 2883.602976 C = 3162.381978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.385 5.385 3 N -0.319 5.319 4 C 0.056 3.944 5 C -0.161 4.161 6 C 0.277 3.723 7 H 0.047 0.953 8 N -0.851 5.851 9 C -0.532 4.532 10 H 0.051 0.949 11 C 0.064 3.936 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.085 3.915 18 C -0.076 4.076 19 C -0.190 4.190 20 C -0.147 4.147 21 H 0.062 0.938 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.175 0.825 25 H 0.354 0.646 26 H 0.309 0.691 27 H 0.263 0.737 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.242 0.972 1.889 10.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.170 5.170 3 N -0.141 5.141 4 C -0.129 4.129 5 C -0.172 4.172 6 C 0.166 3.834 7 H 0.065 0.935 8 N -0.380 5.380 9 C -0.572 4.572 10 H 0.069 0.931 11 C -0.137 4.137 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.208 1.208 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.040 4.040 18 C -0.096 4.096 19 C -0.227 4.227 20 C -0.184 4.184 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.097 0.903 24 H 0.192 0.808 25 H 0.170 0.830 26 H 0.118 0.882 27 H 0.073 0.927 28 H 0.136 0.864 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.488 1.928 2.592 11.933 hybrid contribution 1.297 -1.172 -2.079 2.716 sum -10.191 0.757 0.513 10.232 Atomic orbital electron populations 1.21615 0.75997 1.03445 1.02040 1.48128 1.05439 1.03476 1.59937 1.77170 1.02115 1.07917 1.26881 1.23568 0.94215 0.95405 0.99736 1.20431 0.94708 0.93703 1.08367 1.17311 0.83668 0.89689 0.92712 0.93500 1.59445 1.12245 1.10516 1.55827 1.21895 1.11455 1.30049 0.93831 0.93085 1.24996 0.96342 0.95427 0.96938 1.69741 1.17865 1.35680 1.30311 0.86617 0.78470 0.77806 0.85203 1.20769 1.21239 1.20072 1.19685 0.90706 0.87923 1.05672 1.20241 1.02853 0.90390 0.96084 1.23062 0.92593 1.03637 1.03415 1.22862 0.96387 0.99913 0.99276 0.91948 0.90201 0.90336 0.80782 0.83037 0.88230 0.92693 0.86363 0.89341 0.88749 0.88262 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.46 10.14 59.85 0.61 2.06 16 2 N -0.39 -7.15 4.01 -63.88 -0.26 -7.41 16 3 N -0.32 -6.57 12.58 30.63 0.39 -6.19 16 4 C 0.06 1.19 11.28 -17.36 -0.20 1.00 16 5 C -0.16 -3.64 5.15 -105.05 -0.54 -4.18 16 6 C 0.28 6.92 2.91 -70.02 -0.20 6.71 16 7 H 0.05 1.27 7.06 -51.93 -0.37 0.90 16 8 N -0.85 -20.48 8.95 -6.65 -0.06 -20.54 16 9 C -0.53 -14.34 8.71 -34.44 -0.30 -14.64 16 10 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 11 C 0.06 1.73 5.38 -17.82 -0.10 1.64 16 12 N -0.90 -24.59 11.54 55.43 0.64 -23.95 16 13 Si 0.89 21.08 29.54 -169.99 -5.02 16.05 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 C 0.08 1.71 6.37 -82.26 -0.52 1.18 16 18 C -0.08 -1.31 5.51 -91.77 -0.51 -1.81 16 19 C -0.19 -2.53 9.30 -26.73 -0.25 -2.78 16 20 C -0.15 -2.35 9.27 -26.74 -0.25 -2.60 16 21 H 0.06 0.71 7.71 -51.93 -0.40 0.31 16 22 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.08 0.89 7.75 -51.93 -0.40 0.49 16 24 H 0.18 3.38 7.43 -52.49 -0.39 2.99 16 25 H 0.35 9.06 7.08 -39.30 -0.28 8.79 16 26 H 0.31 7.08 8.01 -39.29 -0.31 6.76 16 27 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 28 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 29 H 0.09 1.15 7.26 -51.93 -0.38 0.77 16 30 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.10 1.72 8.13 -51.93 -0.42 1.29 16 LS Contribution 271.01 15.07 4.08 4.08 Total: -1.00 -29.69 271.01 -6.67 -36.36 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -4.18 Total: 15.02 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -2.26 Total: -13.43 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.71 Total: -58.09 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.69 -6.67 -36.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260470826.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.007 kcal (2) G-P(sol) polarization free energy of solvation -29.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds