Wall clock time and date at job start Mon Mar 30 2020 02:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40077 * 126.03852 * 2 1 4 4 C 1.30848 * 108.20658 * 179.74317 * 3 2 1 5 5 C 1.39867 * 108.19724 * 0.44117 * 4 3 2 6 6 C 1.50702 * 126.03803 * 179.81760 * 5 4 3 7 7 H 1.08997 * 109.47284 * 211.94870 * 6 5 4 8 8 N 1.46910 * 109.47043 * 331.94557 * 6 5 4 9 9 C 1.50699 * 109.47439 * 91.94564 * 6 5 4 10 10 H 1.08006 * 119.99691 * 0.02562 * 9 6 5 11 11 C 1.37873 * 120.00343 * 180.02562 * 9 6 5 12 12 N 1.31516 * 119.99907 * 180.02562 * 11 9 6 13 13 Si 1.86800 * 119.99968 * 359.97438 * 11 9 6 14 14 H 1.48506 * 109.46771 * 90.00057 * 13 11 9 15 15 H 1.48499 * 109.47280 * 210.00170 * 13 11 9 16 16 H 1.48498 * 109.47249 * 330.00140 * 13 11 9 17 17 C 1.34953 * 126.03536 * 180.02562 * 2 1 3 18 18 C 1.50698 * 126.12684 * 359.94927 * 17 2 1 19 19 C 1.52999 * 117.49951 * 196.83253 * 18 17 2 20 20 C 1.52993 * 60.00403 * 252.51302 * 19 18 17 21 21 H 1.09004 * 109.46592 * 264.76333 * 1 2 3 22 22 H 1.08993 * 109.46897 * 24.75801 * 1 2 3 23 23 H 1.08998 * 109.47502 * 144.76725 * 1 2 3 24 24 H 1.07997 * 125.89751 * 180.26105 * 4 3 2 25 25 H 1.00898 * 110.99771 * 296.04829 * 8 6 5 26 26 H 1.00896 * 110.99439 * 59.99996 * 8 6 5 27 27 H 0.96997 * 119.99380 * 179.97438 * 12 11 9 28 28 H 1.08998 * 115.55423 * 342.54639 * 18 17 2 29 29 H 1.09000 * 117.49745 * 0.02562 * 19 18 17 30 30 H 1.09001 * 117.49778 * 145.02203 * 19 18 17 31 31 H 1.09003 * 117.50413 * 252.51251 * 20 19 18 32 32 H 1.09004 * 117.50271 * 107.48573 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5347 0.7320 0.0056 5 6 3.5437 -0.6666 -0.0009 6 6 4.7680 -1.5454 -0.0016 7 1 4.5562 -2.4631 -0.5503 8 7 5.8804 -0.8349 -0.6466 9 6 5.1440 -1.8842 1.4178 10 1 4.5550 -1.5017 2.2384 11 6 6.2398 -2.6823 1.6690 12 7 6.5676 -2.9784 2.9078 13 14 7.2580 -3.3444 0.2497 14 1 8.3433 -2.3830 -0.0716 15 1 7.8513 -4.6506 0.6331 16 1 6.3890 -3.5258 -0.9407 17 6 2.2589 -1.0913 -0.0005 18 6 1.7973 -2.5258 -0.0001 19 6 2.8177 -3.5962 0.3923 20 6 2.3794 -3.4556 -1.0667 21 1 -0.3633 -0.0938 1.0234 22 1 -0.3633 0.9332 -0.4303 23 1 -0.3634 -0.8394 -0.5928 24 1 4.4054 1.3709 0.0110 25 1 5.6784 -0.6534 -1.6184 26 1 6.0961 0.0200 -0.1562 27 1 7.3383 -3.5402 3.0843 28 1 0.7605 -2.6860 0.2956 29 1 3.8228 -3.2627 0.6505 30 1 2.4523 -4.4608 0.9465 31 1 1.7255 -4.2276 -1.4726 32 1 3.0961 -3.0296 -1.7688 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260470852.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:40 Heat of formation + Delta-G solvation = 91.694506 kcal Electronic energy + Delta-G solvation = -15487.329710 eV Core-core repulsion = 13063.963862 eV Total energy + Delta-G solvation = -2423.365848 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.30907 -38.19963 -36.50537 -34.15746 -33.30917 -30.56257 -28.49518 -27.29348 -24.62596 -23.24778 -22.84476 -21.24739 -20.10813 -18.84073 -17.84603 -16.56890 -16.28295 -16.07380 -15.70950 -15.27814 -14.89101 -14.52886 -14.29784 -13.85396 -13.60673 -13.34099 -12.67229 -12.52596 -12.40165 -11.96765 -11.86618 -11.73849 -11.50287 -11.28019 -11.01614 -10.64351 -9.95024 -9.34746 -8.94559 -8.15814 -6.24607 0.90925 1.57034 1.63461 1.72109 1.77490 1.91103 2.59096 3.14014 3.18666 3.65397 3.74440 4.08853 4.12374 4.27345 4.29612 4.40692 4.41618 4.63471 4.66671 4.81461 4.86360 4.97190 5.19825 5.33724 5.43568 5.64730 5.75106 5.80663 6.20881 6.28158 6.57719 6.81624 6.87832 7.09418 7.48182 8.97319 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032631 B = 0.011057 C = 0.009830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.867860 B = 2531.707859 C = 2847.627180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.380 5.380 3 N -0.329 5.329 4 C 0.038 3.962 5 C -0.251 4.251 6 C 0.254 3.746 7 H 0.058 0.942 8 N -0.845 5.845 9 C -0.490 4.490 10 H 0.020 0.980 11 C 0.030 3.970 12 N -0.948 5.948 13 Si 0.991 3.009 14 H -0.282 1.282 15 H -0.326 1.326 16 H -0.254 1.254 17 C 0.106 3.894 18 C -0.104 4.104 19 C -0.209 4.209 20 C -0.149 4.149 21 H 0.079 0.921 22 H 0.098 0.902 23 H 0.107 0.893 24 H 0.186 0.814 25 H 0.330 0.670 26 H 0.337 0.663 27 H 0.262 0.738 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.302 1.142 -9.965 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.164 5.164 3 N -0.151 5.151 4 C -0.147 4.147 5 C -0.264 4.264 6 C 0.144 3.856 7 H 0.076 0.924 8 N -0.375 5.375 9 C -0.528 4.528 10 H 0.038 0.962 11 C -0.169 4.169 12 N -0.588 5.588 13 Si 0.821 3.179 14 H -0.208 1.208 15 H -0.257 1.257 16 H -0.178 1.178 17 C -0.021 4.021 18 C -0.124 4.124 19 C -0.246 4.246 20 C -0.186 4.186 21 H 0.097 0.903 22 H 0.116 0.884 23 H 0.126 0.874 24 H 0.203 0.797 25 H 0.143 0.857 26 H 0.151 0.849 27 H 0.071 0.929 28 H 0.151 0.849 29 H 0.145 0.855 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.731 1.477 -9.700 15.294 hybrid contribution 0.550 0.063 0.107 0.564 sum -11.181 1.540 -9.593 14.813 Atomic orbital electron populations 1.22117 0.72556 1.05796 1.04135 1.48590 1.07442 1.02545 1.57775 1.77123 1.01991 1.08978 1.26981 1.23755 0.95372 0.94935 1.00597 1.21112 0.96149 0.94704 1.14419 1.18054 0.82899 0.91579 0.93097 0.92435 1.59160 1.43120 1.29124 1.06071 1.20842 1.11238 1.29686 0.91058 0.96201 1.25779 0.97841 0.95579 0.97696 1.70098 1.28164 1.38848 1.21680 0.84980 0.78891 0.74285 0.79706 1.20799 1.25670 1.17842 1.20305 0.90543 0.89724 1.01552 1.20409 0.99516 0.84605 1.07847 1.24063 1.02935 0.99329 0.98304 1.23058 1.03011 1.00902 0.91626 0.90272 0.88362 0.87436 0.79674 0.85736 0.84937 0.92894 0.84882 0.85492 0.88012 0.85385 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.01 11.09 127.77 1.42 3.43 16 2 N -0.38 -12.78 4.01 -356.03 -1.43 -14.21 16 3 N -0.33 -12.46 12.58 -57.02 -0.72 -13.18 16 4 C 0.04 1.47 11.30 85.23 0.96 2.43 16 5 C -0.25 -10.33 5.07 -20.14 -0.10 -10.43 16 6 C 0.25 11.30 1.63 43.42 0.07 11.37 16 7 H 0.06 2.58 3.56 -2.39 -0.01 2.57 16 8 N -0.84 -33.81 6.56 -174.94 -1.15 -34.95 16 9 C -0.49 -26.96 7.19 25.60 0.18 -26.78 16 10 H 0.02 1.26 7.98 -2.91 -0.02 1.24 16 11 C 0.03 1.71 5.46 84.65 0.46 2.17 16 12 N -0.95 -58.81 13.96 21.45 0.30 -58.51 16 13 Si 0.99 48.04 26.03 68.60 1.79 49.83 16 14 H -0.28 -13.63 7.11 99.48 0.71 -12.93 16 15 H -0.33 -16.06 7.11 99.48 0.71 -15.35 16 16 H -0.25 -11.43 6.54 99.48 0.65 -10.78 16 17 C 0.11 3.92 6.60 41.40 0.27 4.20 16 18 C -0.10 -3.23 5.85 -11.54 -0.07 -3.30 16 19 C -0.21 -7.48 9.49 30.59 0.29 -7.19 16 20 C -0.15 -4.19 9.65 30.59 0.30 -3.90 16 21 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 22 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.11 1.71 7.78 -2.39 -0.02 1.69 16 24 H 0.19 6.35 7.44 -2.91 -0.02 6.33 16 25 H 0.33 11.20 9.06 -89.70 -0.81 10.39 16 26 H 0.34 13.11 8.01 -89.70 -0.72 12.39 16 27 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 28 H 0.13 3.25 7.79 -2.39 -0.02 3.23 16 29 H 0.13 5.75 2.84 -2.39 -0.01 5.74 16 30 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 31 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.08 2.59 7.21 -2.39 -0.02 2.58 16 Total: -1.00 -70.21 259.78 2.15 -68.06 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.43 Total: 30.97 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 3.79 Total: -28.00 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -2.99 Total: -120.85 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.79 Total: 49.83 kcal Total: -70.21 2.15 -68.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260470852.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.754 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds