Wall clock time and date at job start Mon Mar 30 2020 03:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39300 * 126.46823 * 2 1 4 4 C 1.35975 * 108.09208 * 179.89520 * 3 2 1 5 5 C 1.50699 * 125.47814 * 180.14271 * 4 3 2 6 6 C 1.52999 * 109.46829 * 85.27251 * 5 4 3 7 7 C 1.53004 * 109.47241 * 174.99777 * 6 5 4 8 8 C 1.52994 * 109.47385 * 294.99908 * 6 5 4 9 9 N 1.36171 * 109.04687 * 0.37861 * 4 3 2 10 10 C 1.46498 * 125.74183 * 179.80370 * 9 4 3 11 11 C 1.38023 * 108.51594 * 359.76575 * 9 4 3 12 12 C 1.39949 * 126.35865 * 180.02562 * 11 9 4 13 13 H 1.07999 * 119.99822 * 303.97635 * 12 11 9 14 14 C 1.40061 * 120.00162 * 123.96646 * 12 11 9 15 15 N 1.30858 * 120.00268 * 174.30959 * 14 12 11 16 16 Si 1.86799 * 120.00130 * 354.31342 * 14 12 11 17 17 H 1.48506 * 109.47174 * 95.94580 * 16 14 12 18 18 H 1.48494 * 109.47622 * 215.94855 * 16 14 12 19 19 H 1.48503 * 109.47348 * 335.95164 * 16 14 12 20 20 H 1.08996 * 109.47072 * 275.92171 * 1 2 3 21 21 H 1.09000 * 109.46725 * 155.93188 * 1 2 3 22 22 H 1.08992 * 109.47489 * 35.92863 * 1 2 3 23 23 H 1.07996 * 125.96124 * 0.02562 * 3 2 1 24 24 H 1.08996 * 109.46839 * 205.26885 * 5 4 3 25 25 H 1.08994 * 109.47128 * 325.27129 * 5 4 3 26 26 H 1.09001 * 109.47661 * 55.00036 * 6 5 4 27 27 H 1.09006 * 109.46225 * 59.99876 * 7 6 5 28 28 H 1.08995 * 109.47411 * 179.97438 * 7 6 5 29 29 H 1.09000 * 109.47312 * 300.00535 * 7 6 5 30 30 H 1.09004 * 109.47582 * 180.02562 * 8 6 5 31 31 H 1.09000 * 109.47565 * 300.00593 * 8 6 5 32 32 H 1.09000 * 109.47353 * 60.00389 * 8 6 5 33 33 H 1.09001 * 109.46802 * 269.98316 * 10 9 4 34 34 H 1.09002 * 109.47329 * 29.97925 * 10 9 4 35 35 H 1.09001 * 109.47356 * 149.98147 * 10 9 4 36 36 H 0.97000 * 120.00327 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3349 1.1202 0.0000 4 6 3.6254 0.6916 0.0024 5 6 4.8423 1.5805 0.0062 6 6 5.1807 1.9754 1.4451 7 6 6.4858 2.7737 1.4614 8 6 4.0508 2.8335 2.0176 9 7 3.6413 -0.6700 -0.0046 10 6 4.8403 -1.5118 -0.0088 11 6 2.3378 -1.1237 -0.0063 12 6 1.9246 -2.4607 -0.0124 13 1 2.2643 -3.1273 -0.7913 14 6 1.0708 -2.9345 0.9917 15 7 0.5953 -4.1519 0.9257 16 14 0.6106 -1.8286 2.4250 17 1 -0.6928 -1.1736 2.1463 18 1 0.5011 -2.6420 3.6626 19 1 1.6574 -0.7909 2.6057 20 1 -0.3633 0.1060 1.0221 21 1 -0.3633 -0.9383 -0.4191 22 1 -0.3634 0.8321 -0.6030 23 1 2.0089 2.1498 0.0004 24 1 5.6848 1.0448 -0.4312 25 1 4.6388 2.4775 -0.5785 26 1 5.2970 1.0767 2.0509 27 1 6.3694 3.6724 0.8556 28 1 6.7267 3.0555 2.4864 29 1 7.2908 2.1624 1.0535 30 1 4.2921 3.1153 3.0426 31 1 3.9344 3.7323 1.4120 32 1 3.1210 2.2648 2.0062 33 1 5.1376 -1.7155 -1.0375 34 1 5.6491 -0.9946 0.5075 35 1 4.6264 -2.4515 0.5004 36 1 0.0037 -4.4799 1.6208 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260563936.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:10 Heat of formation + Delta-G solvation = 17.348941 kcal Electronic energy + Delta-G solvation = -15615.180429 eV Core-core repulsion = 13292.131059 eV Total energy + Delta-G solvation = -2323.049370 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.81387 -35.90416 -33.16245 -32.30094 -29.98033 -27.78986 -26.93019 -26.88454 -24.40612 -22.32041 -19.88623 -18.79315 -18.01340 -16.67329 -15.38373 -14.67731 -14.37777 -14.26432 -13.52727 -13.22321 -12.82089 -12.52468 -12.44931 -12.13560 -12.04303 -11.64886 -11.58459 -11.34592 -11.02179 -10.87546 -10.81746 -10.50113 -10.33419 -10.12558 -10.05659 -9.93018 -9.57167 -8.86540 -7.18146 -6.55130 -6.31327 -4.29931 3.20221 3.34015 3.50637 3.56551 4.15320 4.21227 4.30641 5.15579 5.18023 5.25404 5.26142 5.66373 5.76050 5.84701 5.94817 5.98692 6.00384 6.06385 6.19630 6.22585 6.28786 6.40511 6.50430 6.65615 6.69279 6.70786 6.77624 6.83446 7.10131 7.37337 7.56309 7.77677 8.05399 8.46432 8.62069 8.76633 9.04293 9.25579 10.57165 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.033052 B = 0.009814 C = 0.009182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.952497 B = 2852.299007 C = 3048.775790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.261 4.261 3 C -0.168 4.168 4 C -0.060 4.060 5 C -0.030 4.030 6 C -0.092 4.092 7 C -0.145 4.145 8 C -0.146 4.146 9 N -0.460 5.460 10 C 0.087 3.913 11 C 0.208 3.792 12 C -0.482 4.482 13 H 0.082 0.918 14 C 0.102 3.898 15 N -0.854 5.854 16 Si 0.889 3.111 17 H -0.259 1.259 18 H -0.298 1.298 19 H -0.250 1.250 20 H 0.039 0.961 21 H 0.059 0.941 22 H 0.038 0.962 23 H 0.107 0.893 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.295 9.597 1.613 12.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.266 4.266 3 C -0.194 4.194 4 C -0.168 4.168 5 C -0.068 4.068 6 C -0.111 4.111 7 C -0.202 4.202 8 C -0.204 4.204 9 N -0.140 5.140 10 C -0.055 4.055 11 C 0.098 3.902 12 C -0.519 4.519 13 H 0.100 0.900 14 C -0.111 4.111 15 N -0.485 5.485 16 Si 0.716 3.284 17 H -0.185 1.185 18 H -0.226 1.226 19 H -0.173 1.173 20 H 0.057 0.943 21 H 0.078 0.922 22 H 0.057 0.943 23 H 0.125 0.875 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.499 9.251 1.677 12.026 hybrid contribution -0.176 0.323 0.645 0.742 sum 7.324 9.574 2.322 12.275 Atomic orbital electron populations 1.20098 0.92392 1.00707 0.99333 1.19684 0.93829 0.92359 1.20699 1.19988 0.91599 0.96660 1.11106 1.19754 0.94981 0.82985 1.19105 1.19907 0.94066 0.97272 0.95534 1.21091 0.94512 0.98394 0.97054 1.21857 0.97264 0.99984 1.01133 1.21871 0.99784 0.99484 0.99224 1.44804 1.06250 1.04645 1.58254 1.21564 0.86646 0.96131 1.01196 1.18095 0.80183 0.93634 0.98337 1.17957 1.28610 0.93137 1.12166 0.90039 1.25603 0.92961 0.94642 0.97855 1.69604 1.28329 1.16798 1.33757 0.86727 0.81304 0.80556 0.79798 1.18477 1.22570 1.17321 0.94254 0.92161 0.94262 0.87508 0.92832 0.91556 0.91750 0.92925 0.93139 0.93152 0.93848 0.93290 0.91089 0.93116 0.92060 0.90015 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.57 8.41 36.00 0.30 -1.26 16 2 C -0.26 -6.44 4.85 -103.67 -0.50 -6.94 16 3 C -0.17 -3.73 8.89 -40.00 -0.36 -4.08 16 4 C -0.06 -1.26 5.76 -81.48 -0.47 -1.73 16 5 C -0.03 -0.48 4.76 -27.88 -0.13 -0.61 16 6 C -0.09 -1.35 2.91 -90.62 -0.26 -1.61 16 7 C -0.14 -1.68 9.19 37.16 0.34 -1.34 16 8 C -0.15 -2.16 8.86 37.15 0.33 -1.83 16 9 N -0.46 -10.47 3.19 -116.84 -0.37 -10.84 16 10 C 0.09 1.63 10.50 59.85 0.63 2.26 16 11 C 0.21 5.39 5.22 -83.87 -0.44 4.95 16 12 C -0.48 -13.52 8.83 -38.26 -0.34 -13.86 16 13 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 14 C 0.10 2.85 5.22 -17.28 -0.09 2.76 16 15 N -0.85 -24.38 13.93 55.56 0.77 -23.61 16 16 Si 0.89 22.04 24.03 -169.99 -4.09 17.96 16 17 H -0.26 -6.15 5.73 56.52 0.32 -5.82 16 18 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 19 H -0.25 -6.44 6.82 56.52 0.39 -6.05 16 20 H 0.04 0.89 5.15 -51.93 -0.27 0.62 16 21 H 0.06 1.45 7.55 -51.93 -0.39 1.06 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.11 2.14 8.02 -52.49 -0.42 1.71 16 24 H 0.05 0.81 7.43 -51.93 -0.39 0.43 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.24 6.16 -51.93 -0.32 0.92 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.96 7.49 -51.93 -0.39 0.57 16 35 H 0.08 1.59 7.80 -51.93 -0.41 1.18 16 36 H 0.28 7.29 8.30 -40.82 -0.34 6.95 16 LS Contribution 283.43 15.07 4.27 4.27 Total: -1.00 -29.58 283.43 -6.44 -36.02 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -6.04 Total: -0.49 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: -0.99 Total: -23.30 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.40 Total: -34.45 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.09 Total: 17.96 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.58 -6.44 -36.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260563936.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.365 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds