Wall clock time and date at job start Mon Mar 30 2020 03:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39300 * 126.46823 * 2 1 4 4 C 1.35975 * 108.09208 * 179.89520 * 3 2 1 5 5 C 1.50699 * 125.47814 * 180.14271 * 4 3 2 6 6 C 1.52999 * 109.46829 * 85.27251 * 5 4 3 7 7 C 1.53004 * 109.47241 * 174.99777 * 6 5 4 8 8 C 1.52994 * 109.47385 * 294.99908 * 6 5 4 9 9 N 1.36171 * 109.04687 * 0.37861 * 4 3 2 10 10 C 1.46498 * 125.74183 * 179.80370 * 9 4 3 11 11 C 1.38023 * 108.51594 * 359.76575 * 9 4 3 12 12 C 1.39949 * 126.35865 * 180.02562 * 11 9 4 13 13 H 1.07999 * 119.99822 * 303.97635 * 12 11 9 14 14 C 1.40061 * 120.00162 * 123.96646 * 12 11 9 15 15 N 1.30858 * 120.00268 * 174.30959 * 14 12 11 16 16 Si 1.86799 * 120.00130 * 354.31342 * 14 12 11 17 17 H 1.48506 * 109.47174 * 95.94580 * 16 14 12 18 18 H 1.48494 * 109.47622 * 215.94855 * 16 14 12 19 19 H 1.48503 * 109.47348 * 335.95164 * 16 14 12 20 20 H 1.08996 * 109.47072 * 275.92171 * 1 2 3 21 21 H 1.09000 * 109.46725 * 155.93188 * 1 2 3 22 22 H 1.08992 * 109.47489 * 35.92863 * 1 2 3 23 23 H 1.07996 * 125.96124 * 0.02562 * 3 2 1 24 24 H 1.08996 * 109.46839 * 205.26885 * 5 4 3 25 25 H 1.08994 * 109.47128 * 325.27129 * 5 4 3 26 26 H 1.09001 * 109.47661 * 55.00036 * 6 5 4 27 27 H 1.09006 * 109.46225 * 59.99876 * 7 6 5 28 28 H 1.08995 * 109.47411 * 179.97438 * 7 6 5 29 29 H 1.09000 * 109.47312 * 300.00535 * 7 6 5 30 30 H 1.09004 * 109.47582 * 180.02562 * 8 6 5 31 31 H 1.09000 * 109.47565 * 300.00593 * 8 6 5 32 32 H 1.09000 * 109.47353 * 60.00389 * 8 6 5 33 33 H 1.09001 * 109.46802 * 269.98316 * 10 9 4 34 34 H 1.09002 * 109.47329 * 29.97925 * 10 9 4 35 35 H 1.09001 * 109.47356 * 149.98147 * 10 9 4 36 36 H 0.97000 * 120.00327 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3349 1.1202 0.0000 4 6 3.6254 0.6916 0.0024 5 6 4.8423 1.5805 0.0062 6 6 5.1807 1.9754 1.4451 7 6 6.4858 2.7737 1.4614 8 6 4.0508 2.8335 2.0176 9 7 3.6413 -0.6700 -0.0046 10 6 4.8403 -1.5118 -0.0088 11 6 2.3378 -1.1237 -0.0063 12 6 1.9246 -2.4607 -0.0124 13 1 2.2643 -3.1273 -0.7913 14 6 1.0708 -2.9345 0.9917 15 7 0.5953 -4.1519 0.9257 16 14 0.6106 -1.8286 2.4250 17 1 -0.6928 -1.1736 2.1463 18 1 0.5011 -2.6420 3.6626 19 1 1.6574 -0.7909 2.6057 20 1 -0.3633 0.1060 1.0221 21 1 -0.3633 -0.9383 -0.4191 22 1 -0.3634 0.8321 -0.6030 23 1 2.0089 2.1498 0.0004 24 1 5.6848 1.0448 -0.4312 25 1 4.6388 2.4775 -0.5785 26 1 5.2970 1.0767 2.0509 27 1 6.3694 3.6724 0.8556 28 1 6.7267 3.0555 2.4864 29 1 7.2908 2.1624 1.0535 30 1 4.2921 3.1153 3.0426 31 1 3.9344 3.7323 1.4120 32 1 3.1210 2.2648 2.0062 33 1 5.1376 -1.7155 -1.0375 34 1 5.6491 -0.9946 0.5075 35 1 4.6264 -2.4515 0.5004 36 1 0.0037 -4.4799 1.6208 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260563936.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:09 Heat of formation + Delta-G solvation = 0.464348 kcal Electronic energy + Delta-G solvation = -15615.912600 eV Core-core repulsion = 13292.131059 eV Total energy + Delta-G solvation = -2323.781541 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.56475 -37.14557 -35.16176 -34.08296 -31.67264 -29.55081 -28.52661 -27.92577 -26.08591 -24.08653 -21.17931 -20.58428 -19.73805 -18.60335 -17.24748 -16.08613 -15.92099 -15.83188 -15.07129 -14.78893 -14.56918 -14.25430 -13.94356 -13.58371 -13.35795 -13.28767 -13.03452 -12.92338 -12.61379 -12.54594 -12.24049 -12.04396 -11.93909 -11.74234 -11.60104 -11.45099 -11.38803 -10.91088 -8.94088 -8.62848 -8.22345 -6.40038 1.25322 1.31752 1.51695 1.72543 2.25113 2.34062 2.50806 3.11739 4.02808 4.06376 4.15295 4.21181 4.51641 4.55836 4.67212 4.72849 4.77191 4.80660 4.88856 4.94049 4.96967 5.02968 5.05315 5.11698 5.16304 5.28683 5.32480 5.44725 5.52619 5.56621 5.74248 5.94693 6.01054 6.45380 6.73651 6.89111 7.07948 7.30302 8.51562 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.033052 B = 0.009814 C = 0.009182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.952497 B = 2852.299007 C = 3048.775790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.267 4.267 3 C -0.191 4.191 4 C -0.035 4.035 5 C -0.029 4.029 6 C -0.089 4.089 7 C -0.138 4.138 8 C -0.146 4.146 9 N -0.467 5.467 10 C 0.083 3.917 11 C 0.159 3.841 12 C -0.490 4.490 13 H 0.042 0.958 14 C 0.064 3.936 15 N -0.896 5.896 16 Si 0.943 3.057 17 H -0.243 1.243 18 H -0.291 1.291 19 H -0.264 1.264 20 H 0.042 0.958 21 H 0.038 0.962 22 H 0.066 0.934 23 H 0.130 0.870 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.096 0.904 35 H 0.064 0.936 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.839 12.529 2.132 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.273 4.273 3 C -0.216 4.216 4 C -0.145 4.145 5 C -0.067 4.067 6 C -0.108 4.108 7 C -0.195 4.195 8 C -0.203 4.203 9 N -0.145 5.145 10 C -0.059 4.059 11 C 0.048 3.952 12 C -0.527 4.527 13 H 0.060 0.940 14 C -0.144 4.144 15 N -0.529 5.529 16 Si 0.768 3.232 17 H -0.168 1.168 18 H -0.218 1.218 19 H -0.189 1.189 20 H 0.061 0.939 21 H 0.057 0.943 22 H 0.085 0.915 23 H 0.148 0.852 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.083 0.917 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.050 12.167 2.188 15.320 hybrid contribution -0.529 -0.481 0.413 0.825 sum 8.521 11.686 2.601 14.695 Atomic orbital electron populations 1.20106 0.91771 1.00733 0.99869 1.20096 0.94752 0.92986 1.19431 1.20260 0.91815 0.97138 1.12396 1.20579 0.96654 0.82542 1.14683 1.20096 0.92300 0.97099 0.97233 1.21048 0.96251 0.98213 0.95300 1.21784 0.95419 1.00061 1.02234 1.21858 0.98265 0.99659 1.00551 1.44947 1.06369 1.05905 1.57288 1.21780 0.86128 0.95464 1.02519 1.17981 0.81927 0.93090 1.02220 1.17870 1.29499 0.93834 1.11512 0.93988 1.26216 0.93035 0.95564 0.99627 1.69664 1.29941 1.18173 1.35089 0.85916 0.81127 0.78720 0.77473 1.16763 1.21824 1.18866 0.93920 0.94279 0.91472 0.85213 0.91257 0.89613 0.93609 0.91631 0.92168 0.92213 0.92587 0.91642 0.94215 0.91560 0.88586 0.91691 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -3.07 8.41 71.24 0.60 -2.47 16 2 C -0.27 -13.05 4.85 -19.25 -0.09 -13.14 16 3 C -0.19 -8.11 8.89 22.00 0.20 -7.91 16 4 C -0.03 -1.38 5.76 41.36 0.24 -1.14 16 5 C -0.03 -0.83 4.76 29.85 0.14 -0.69 16 6 C -0.09 -2.28 2.91 -10.79 -0.03 -2.31 16 7 C -0.14 -2.55 9.19 71.98 0.66 -1.89 16 8 C -0.15 -3.82 8.86 71.98 0.64 -3.19 16 9 N -0.47 -20.87 3.19 -523.57 -1.67 -22.54 16 10 C 0.08 3.00 10.50 127.77 1.34 4.34 16 11 C 0.16 8.34 5.22 38.95 0.20 8.54 16 12 C -0.49 -28.73 8.83 23.13 0.20 -28.52 16 13 H 0.04 2.69 8.06 -2.91 -0.02 2.66 16 14 C 0.06 3.69 5.22 85.28 0.45 4.13 16 15 N -0.90 -53.09 13.93 21.85 0.30 -52.79 16 16 Si 0.94 46.29 24.03 68.60 1.65 47.94 16 17 H -0.24 -11.14 5.73 99.48 0.57 -10.57 16 18 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 19 H -0.26 -13.49 6.82 99.48 0.68 -12.81 16 20 H 0.04 1.88 5.15 -2.39 -0.01 1.86 16 21 H 0.04 1.89 7.55 -2.39 -0.02 1.88 16 22 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 23 H 0.13 4.81 8.02 -2.91 -0.02 4.79 16 24 H 0.07 1.78 7.43 -2.39 -0.02 1.77 16 25 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 28 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.29 6.16 -2.39 -0.01 1.27 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.10 2.76 7.49 -2.39 -0.02 2.74 16 35 H 0.06 2.56 7.80 -2.39 -0.02 2.54 16 36 H 0.28 15.34 8.30 -92.71 -0.77 14.57 16 Total: -1.00 -65.66 283.43 5.69 -59.97 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.86 Total: 11.67 kcal Atomic # 6 Polarization: -48.79 SS G_CDS: 4.54 Total: -44.25 kcal Atomic # 7 Polarization: -73.96 SS G_CDS: -1.37 Total: -75.33 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.65 Total: 47.94 kcal Total: -65.66 5.69 -59.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260563936.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.433 kcal (2) G-P(sol) polarization free energy of solvation -65.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds