Wall clock time and date at job start Mon Mar 30 2020 02:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40000 * 126.02865 * 2 1 4 4 C 1.30739 * 108.21094 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.87330 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46644 * 164.97868 * 5 4 3 7 7 N 1.46891 * 109.47728 * 44.97452 * 5 4 3 8 8 C 1.50705 * 109.46933 * 284.97121 * 5 4 3 9 9 H 1.08004 * 119.99802 * 0.02562 * 8 5 4 10 10 C 1.37877 * 120.00036 * 180.02562 * 8 5 4 11 11 N 1.31516 * 119.99646 * 0.02562 * 10 8 5 12 12 Si 1.86795 * 120.00097 * 179.97438 * 10 8 5 13 13 H 1.48496 * 109.47005 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46841 * 120.00124 * 12 10 8 15 15 H 1.48499 * 109.47325 * 239.99915 * 12 10 8 16 16 C 1.40166 * 108.24159 * 0.02562 * 4 3 2 17 17 C 1.35134 * 107.86045 * 359.77456 * 16 4 3 18 18 C 1.51321 * 110.30490 * 180.27313 * 17 16 4 19 19 C 1.54444 * 104.99560 * 17.06479 * 18 17 16 20 20 C 1.51368 * 141.88955 * 179.97438 * 16 4 3 21 21 H 1.09001 * 109.47060 * 90.02915 * 1 2 3 22 22 H 1.09004 * 109.47073 * 210.02404 * 1 2 3 23 23 H 1.09000 * 109.47212 * 330.02486 * 1 2 3 24 24 H 1.00903 * 111.00421 * 176.04669 * 7 5 4 25 25 H 1.00900 * 110.99815 * 299.99727 * 7 5 4 26 26 H 0.97003 * 119.99587 * 179.97438 * 11 10 8 27 27 H 1.09001 * 110.33885 * 135.94835 * 18 17 16 28 28 H 1.09001 * 110.34010 * 258.08048 * 18 17 16 29 29 H 1.09006 * 110.92265 * 92.45108 * 19 18 17 30 30 H 1.08992 * 110.93035 * 216.07252 * 19 18 17 31 31 H 1.08998 * 110.33462 * 281.99647 * 20 16 4 32 32 H 1.09003 * 110.33269 * 44.23554 * 20 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2885 1.1322 0.0000 4 6 3.5332 0.7322 0.0006 5 6 4.7476 1.6245 0.0013 6 1 5.6280 1.0397 0.2680 7 7 4.5617 2.7038 0.9802 8 6 4.9357 2.2180 -1.3711 9 1 4.2447 1.9737 -2.1644 10 6 5.9899 3.0727 -1.6141 11 7 6.8316 3.3697 -0.6481 12 14 6.2235 3.8077 -3.3154 13 1 5.1500 3.3188 -4.2174 14 1 6.1595 5.2888 -3.2277 15 1 7.5464 3.4005 -3.8532 16 6 3.5436 -0.6695 0.0003 17 6 2.2605 -1.0934 0.0047 18 6 2.2071 -2.6057 0.0114 19 6 3.6192 -3.0534 0.4484 20 6 4.4866 -1.8535 0.0002 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3634 0.8902 0.5134 24 1 5.3884 3.2786 1.0462 25 1 3.7512 3.2608 0.7547 26 1 7.5735 3.9708 -0.8192 27 1 1.4611 -2.9553 0.7251 28 1 1.9809 -2.9813 -0.9865 29 1 3.6664 -3.1931 1.5285 30 1 3.9183 -3.9624 -0.0733 31 1 4.8888 -2.0173 -0.9995 32 1 5.2953 -1.6937 0.7133 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260577041.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:31 Heat of formation + Delta-G solvation = 75.996928 kcal Electronic energy + Delta-G solvation = -15054.526583 eV Core-core repulsion = 12630.480037 eV Total energy + Delta-G solvation = -2424.046546 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.82300 -35.85140 -34.77535 -32.37721 -30.63985 -27.90962 -27.55734 -26.31482 -25.03231 -22.38047 -20.82218 -18.91732 -18.29494 -16.40362 -16.00615 -15.50087 -14.67683 -14.33876 -13.80845 -13.25131 -12.89014 -12.56324 -12.53792 -12.44364 -12.06420 -11.82935 -11.16883 -11.13683 -10.85652 -10.76572 -10.67036 -10.64901 -9.94633 -9.76535 -9.56790 -8.59869 -8.22975 -7.46782 -7.07093 -6.00755 -4.15604 2.56667 3.05529 3.26902 3.34741 3.40487 3.74922 4.41567 4.69949 4.96681 5.04301 5.20063 5.21935 5.42839 5.61304 5.62928 5.71748 5.80693 5.99224 6.03468 6.16035 6.46124 6.53514 6.57361 6.83478 6.99100 7.44013 7.70178 7.81683 7.83686 8.17150 8.69399 8.79256 9.05097 9.25837 9.55176 10.97013 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032177 B = 0.008500 C = 0.007910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.990860 B = 3293.319520 C = 3538.929180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.379 5.379 3 N -0.288 5.288 4 C 0.152 3.848 5 C 0.281 3.719 6 H 0.055 0.945 7 N -0.849 5.849 8 C -0.533 4.533 9 H 0.054 0.946 10 C 0.065 3.935 11 N -0.895 5.895 12 Si 0.898 3.102 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.283 1.283 16 C -0.248 4.248 17 C 0.027 3.973 18 C -0.037 4.037 19 C -0.114 4.114 20 C -0.041 4.041 21 H 0.063 0.937 22 H 0.074 0.926 23 H 0.082 0.918 24 H 0.355 0.645 25 H 0.318 0.682 26 H 0.264 0.736 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 -10.767 1.357 13.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.161 5.161 3 N -0.108 5.108 4 C -0.015 4.015 5 C 0.169 3.831 6 H 0.073 0.927 7 N -0.379 5.379 8 C -0.574 4.574 9 H 0.072 0.928 10 C -0.137 4.137 11 N -0.535 5.535 12 Si 0.726 3.274 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.209 1.209 16 C -0.260 4.260 17 C -0.100 4.100 18 C -0.076 4.076 19 C -0.152 4.152 20 C -0.079 4.079 21 H 0.081 0.919 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.171 0.829 25 H 0.127 0.873 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.273 -10.240 1.945 13.951 hybrid contribution 0.636 0.496 -1.900 2.064 sum -8.637 -9.745 0.045 13.021 Atomic orbital electron populations 1.21603 0.76044 1.03333 1.02223 1.47916 1.05368 1.02792 1.59976 1.77446 1.01262 1.04934 1.27149 1.22584 0.93638 0.92017 0.93257 1.17501 0.86623 0.88408 0.90549 0.92725 1.59393 1.09369 1.17695 1.51400 1.21803 1.11399 1.27381 0.96830 0.92756 1.24985 0.95166 0.96242 0.97319 1.69758 1.15692 1.36152 1.31889 0.86442 0.77964 0.78774 0.84250 1.19881 1.20966 1.20859 1.20808 0.94496 0.93950 1.16772 1.21588 0.92048 0.92005 1.04385 1.20579 0.98608 0.86847 1.01601 1.22402 0.93540 0.98103 1.01180 1.20361 0.96349 0.89989 1.01246 0.91894 0.90707 0.89915 0.82914 0.87281 0.92570 0.91466 0.90399 0.91002 0.90674 0.91194 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.47 11.47 59.85 0.69 2.16 16 2 N -0.38 -7.35 4.02 -63.64 -0.26 -7.60 16 3 N -0.29 -6.87 12.41 33.72 0.42 -6.45 16 4 C 0.15 3.78 5.99 -82.33 -0.49 3.29 16 5 C 0.28 7.59 3.20 -70.02 -0.22 7.37 16 6 H 0.05 1.57 8.13 -51.93 -0.42 1.14 16 7 N -0.85 -22.17 9.18 -6.65 -0.06 -22.23 16 8 C -0.53 -15.26 8.71 -34.44 -0.30 -15.56 16 9 H 0.05 1.61 7.74 -52.48 -0.41 1.21 16 10 C 0.06 1.81 5.38 -17.82 -0.10 1.72 16 11 N -0.90 -25.33 11.54 55.43 0.64 -24.69 16 12 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 C -0.25 -5.28 6.82 -104.67 -0.71 -6.00 16 17 C 0.03 0.49 7.58 -81.90 -0.62 -0.13 16 18 C -0.04 -0.48 6.78 -26.82 -0.18 -0.66 16 19 C -0.11 -1.43 7.14 -25.08 -0.18 -1.61 16 20 C -0.04 -0.69 6.80 -26.66 -0.18 -0.87 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.35 9.58 7.08 -39.29 -0.28 9.30 16 25 H 0.32 8.26 8.85 -39.29 -0.35 7.91 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 271.27 15.07 4.09 4.09 Total: -1.00 -31.99 271.27 -6.89 -38.88 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -4.39 Total: 11.56 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -2.30 Total: -10.31 kcal Atomic # 7 Polarization: -61.71 SS G_CDS: 0.74 Total: -60.97 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.99 -6.89 -38.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577041.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.880 kcal (2) G-P(sol) polarization free energy of solvation -31.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds