Wall clock time and date at job start Mon Mar 30 2020 02:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40000 * 126.02865 * 2 1 4 4 C 1.30739 * 108.21094 * 179.97438 * 3 2 1 5 5 C 1.50701 * 125.87330 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46644 * 164.97868 * 5 4 3 7 7 N 1.46891 * 109.47728 * 44.97452 * 5 4 3 8 8 C 1.50705 * 109.46933 * 284.97121 * 5 4 3 9 9 H 1.08004 * 119.99802 * 0.02562 * 8 5 4 10 10 C 1.37877 * 120.00036 * 180.02562 * 8 5 4 11 11 N 1.31516 * 119.99646 * 0.02562 * 10 8 5 12 12 Si 1.86795 * 120.00097 * 179.97438 * 10 8 5 13 13 H 1.48496 * 109.47005 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.46841 * 120.00124 * 12 10 8 15 15 H 1.48499 * 109.47325 * 239.99915 * 12 10 8 16 16 C 1.40166 * 108.24159 * 0.02562 * 4 3 2 17 17 C 1.35134 * 107.86045 * 359.77456 * 16 4 3 18 18 C 1.51321 * 110.30490 * 180.27313 * 17 16 4 19 19 C 1.54444 * 104.99560 * 17.06479 * 18 17 16 20 20 C 1.51368 * 141.88955 * 179.97438 * 16 4 3 21 21 H 1.09001 * 109.47060 * 90.02915 * 1 2 3 22 22 H 1.09004 * 109.47073 * 210.02404 * 1 2 3 23 23 H 1.09000 * 109.47212 * 330.02486 * 1 2 3 24 24 H 1.00903 * 111.00421 * 176.04669 * 7 5 4 25 25 H 1.00900 * 110.99815 * 299.99727 * 7 5 4 26 26 H 0.97003 * 119.99587 * 179.97438 * 11 10 8 27 27 H 1.09001 * 110.33885 * 135.94835 * 18 17 16 28 28 H 1.09001 * 110.34010 * 258.08048 * 18 17 16 29 29 H 1.09006 * 110.92265 * 92.45108 * 19 18 17 30 30 H 1.08992 * 110.93035 * 216.07252 * 19 18 17 31 31 H 1.08998 * 110.33462 * 281.99647 * 20 16 4 32 32 H 1.09003 * 110.33269 * 44.23554 * 20 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2885 1.1322 0.0000 4 6 3.5332 0.7322 0.0006 5 6 4.7476 1.6245 0.0013 6 1 5.6280 1.0397 0.2680 7 7 4.5617 2.7038 0.9802 8 6 4.9357 2.2180 -1.3711 9 1 4.2447 1.9737 -2.1644 10 6 5.9899 3.0727 -1.6141 11 7 6.8316 3.3697 -0.6481 12 14 6.2235 3.8077 -3.3154 13 1 5.1500 3.3188 -4.2174 14 1 6.1595 5.2888 -3.2277 15 1 7.5464 3.4005 -3.8532 16 6 3.5436 -0.6695 0.0003 17 6 2.2605 -1.0934 0.0047 18 6 2.2071 -2.6057 0.0114 19 6 3.6192 -3.0534 0.4484 20 6 4.4866 -1.8535 0.0002 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3633 -0.8898 0.5142 23 1 -0.3634 0.8902 0.5134 24 1 5.3884 3.2786 1.0462 25 1 3.7512 3.2608 0.7547 26 1 7.5735 3.9708 -0.8192 27 1 1.4611 -2.9553 0.7251 28 1 1.9809 -2.9813 -0.9865 29 1 3.6664 -3.1931 1.5285 30 1 3.9183 -3.9624 -0.0733 31 1 4.8888 -2.0173 -0.9995 32 1 5.2953 -1.6937 0.7133 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260577041.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:31 Heat of formation + Delta-G solvation = 52.757764 kcal Electronic energy + Delta-G solvation = -15055.534308 eV Core-core repulsion = 12630.480037 eV Total energy + Delta-G solvation = -2425.054272 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.32096 -37.20294 -36.67801 -34.11399 -32.57093 -29.21151 -28.91722 -28.23899 -26.64992 -24.17207 -22.08484 -20.45080 -19.88554 -18.55159 -17.49284 -16.77750 -16.62244 -15.83267 -15.49512 -14.85261 -14.69040 -14.12468 -13.68458 -13.65573 -13.42187 -13.18265 -13.07548 -12.93146 -12.83214 -12.39535 -11.99147 -11.91625 -11.76512 -11.73104 -11.15710 -10.74762 -9.84516 -9.25170 -8.94751 -8.15238 -6.40169 1.08672 1.33766 1.35003 1.47480 1.71833 2.01465 2.37593 3.01976 3.50294 3.82432 3.91478 4.26146 4.30271 4.43469 4.50281 4.59409 4.64870 4.65831 4.81157 4.92149 5.02475 5.10896 5.27223 5.40773 5.43554 5.54031 5.60413 5.92092 6.06672 6.42427 6.57036 6.83852 7.06115 7.09291 7.34514 8.80719 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032177 B = 0.008500 C = 0.007910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.990860 B = 3293.319520 C = 3538.929180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.378 5.378 3 N -0.328 5.328 4 C 0.114 3.886 5 C 0.286 3.714 6 H 0.023 0.977 7 N -0.840 5.840 8 C -0.554 4.554 9 H 0.034 0.966 10 C 0.023 3.977 11 N -0.914 5.914 12 Si 0.964 3.036 13 H -0.279 1.279 14 H -0.274 1.274 15 H -0.271 1.271 16 C -0.300 4.300 17 C 0.046 3.954 18 C -0.030 4.030 19 C -0.100 4.100 20 C -0.046 4.046 21 H 0.079 0.921 22 H 0.116 0.884 23 H 0.084 0.916 24 H 0.347 0.653 25 H 0.317 0.683 26 H 0.270 0.730 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.907 -12.788 0.808 16.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.159 5.159 3 N -0.150 5.150 4 C -0.051 4.051 5 C 0.174 3.826 6 H 0.041 0.959 7 N -0.369 5.369 8 C -0.594 4.594 9 H 0.052 0.948 10 C -0.177 4.177 11 N -0.553 5.553 12 Si 0.789 3.211 13 H -0.204 1.204 14 H -0.199 1.199 15 H -0.196 1.196 16 C -0.312 4.312 17 C -0.083 4.083 18 C -0.069 4.069 19 C -0.138 4.138 20 C -0.084 4.084 21 H 0.097 0.903 22 H 0.134 0.866 23 H 0.102 0.898 24 H 0.162 0.838 25 H 0.126 0.874 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.120 0.880 29 H 0.100 0.900 30 H 0.128 0.872 31 H 0.083 0.917 32 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.807 -12.260 1.407 16.404 hybrid contribution 1.035 1.110 -1.699 2.279 sum -9.772 -11.150 -0.292 14.829 Atomic orbital electron populations 1.22087 0.72621 1.05531 1.03985 1.48326 1.07229 1.02097 1.58256 1.77251 1.01554 1.07701 1.28473 1.22338 0.93346 0.93644 0.95813 1.17208 0.87214 0.88388 0.89812 0.95928 1.59377 1.08813 1.17352 1.51317 1.21855 1.11767 1.28614 0.97155 0.94790 1.25733 0.94588 0.96273 1.01117 1.69842 1.15822 1.36161 1.33494 0.85426 0.77955 0.78194 0.79505 1.20400 1.19942 1.19640 1.21353 0.97603 0.93442 1.18801 1.22529 0.90622 0.94351 1.00838 1.20846 0.99775 0.82243 1.04071 1.22426 0.92008 0.97065 1.02259 1.20501 0.96363 0.90744 1.00840 0.90283 0.86552 0.89755 0.83830 0.87364 0.92026 0.87866 0.87989 0.89962 0.87170 0.91702 0.92888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.33 11.47 127.77 1.47 3.80 16 2 N -0.38 -14.16 4.02 -355.25 -1.43 -15.59 16 3 N -0.33 -16.02 12.41 -47.25 -0.59 -16.61 16 4 C 0.11 5.91 5.99 43.19 0.26 6.17 16 5 C 0.29 16.32 3.20 43.43 0.14 16.46 16 6 H 0.02 1.40 8.13 -2.39 -0.02 1.38 16 7 N -0.84 -46.11 9.18 -174.96 -1.61 -47.71 16 8 C -0.55 -33.08 8.71 25.60 0.22 -32.85 16 9 H 0.03 2.11 7.74 -2.91 -0.02 2.09 16 10 C 0.02 1.33 5.38 84.65 0.46 1.78 16 11 N -0.91 -52.86 11.54 21.45 0.25 -52.62 16 12 Si 0.96 45.33 29.54 68.60 2.03 47.35 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 14 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 15 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 16 C -0.30 -12.96 6.82 -19.90 -0.14 -13.09 16 17 C 0.05 1.59 7.58 41.52 0.31 1.90 16 18 C -0.03 -0.65 6.78 30.54 0.21 -0.44 16 19 C -0.10 -2.13 7.14 31.66 0.23 -1.90 16 20 C -0.05 -1.55 6.80 30.64 0.21 -1.34 16 21 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.12 1.83 8.14 -2.38 -0.02 1.81 16 23 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.35 19.60 7.08 -89.69 -0.64 18.97 16 25 H 0.32 17.29 8.85 -89.69 -0.79 16.50 16 26 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 27 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.08 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -73.42 271.27 1.72 -71.70 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.30 Total: 33.00 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 3.36 Total: -19.52 kcal Atomic # 7 Polarization: -129.15 SS G_CDS: -3.37 Total: -132.53 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -73.42 1.72 -71.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260577041.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.460 kcal (2) G-P(sol) polarization free energy of solvation -73.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds