Wall clock time and date at job start Mon Mar 30 2020 02:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47836 * 111.00391 * 2 1 4 4 C 1.54905 * 104.80025 * 213.63693 * 3 2 1 5 5 C 1.55141 * 101.65148 * 37.07000 * 4 3 2 6 6 C 1.47448 * 110.99964 * 239.15902 * 2 1 3 7 7 H 1.09001 * 109.88743 * 242.66894 * 6 2 1 8 8 N 1.46504 * 109.88740 * 3.68986 * 6 2 1 9 9 C 1.34505 * 125.67622 * 243.26192 * 8 6 2 10 10 C 1.39281 * 107.18481 * 179.90479 * 9 8 6 11 11 C 1.41599 * 126.55631 * 180.13393 * 10 9 8 12 12 H 1.08001 * 119.99599 * 0.28568 * 11 10 9 13 13 C 1.39691 * 119.99876 * 180.29102 * 11 10 9 14 14 N 1.31025 * 120.00354 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99864 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47290 * 89.99549 * 15 13 11 17 17 H 1.48500 * 109.47008 * 209.99643 * 15 13 11 18 18 H 1.48500 * 109.47074 * 329.99538 * 15 13 11 19 19 C 1.41886 * 106.88677 * 0.35675 * 10 9 8 20 20 N 1.30316 * 108.04708 * 359.77849 * 19 10 9 21 21 H 1.09002 * 109.47401 * 180.83948 * 1 2 3 22 22 H 1.09001 * 109.46874 * 60.83961 * 1 2 3 23 23 H 1.09004 * 109.46970 * 300.84094 * 1 2 3 24 24 H 1.09002 * 110.37573 * 332.47383 * 3 2 1 25 25 H 1.09009 * 110.36990 * 94.80497 * 3 2 1 26 26 H 1.09000 * 110.99139 * 278.97739 * 4 3 2 27 27 H 1.09000 * 111.02523 * 155.17740 * 4 3 2 28 28 H 1.09000 * 110.70394 * 205.96331 * 5 4 3 29 29 H 1.09005 * 110.84932 * 82.79848 * 5 4 3 30 30 H 1.07993 * 126.40561 * 0.03919 * 9 8 6 31 31 H 0.97001 * 120.00415 * 180.02562 * 14 13 11 32 32 H 1.08002 * 125.97306 * 179.77793 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9989 1.3801 0.0000 4 6 3.3048 1.3026 -0.8296 5 6 2.9159 0.2821 -1.9315 6 6 1.9974 -0.7057 -1.1819 7 1 2.5696 -1.5785 -0.8675 8 7 0.8925 -1.1207 -2.0498 9 6 0.5637 -2.3903 -2.3484 10 6 -0.5401 -2.3410 -3.1963 11 6 -1.2223 -3.4475 -3.7578 12 1 -0.8967 -4.4527 -3.5342 13 6 -2.3165 -3.2389 -4.6008 14 7 -2.7117 -2.0194 -4.8717 15 14 -3.2170 -4.6987 -5.3410 16 1 -4.3136 -5.1169 -4.4312 17 1 -3.7857 -4.3137 -6.6576 18 1 -2.2674 -5.8258 -5.5225 19 6 -0.8469 -0.9699 -3.3942 20 7 0.0077 -0.2623 -2.7108 21 1 -0.3634 -1.0275 0.0151 22 1 -0.3633 0.5007 -0.8974 23 1 -0.3633 0.5269 0.8824 24 1 1.2890 2.0592 -0.4722 25 1 2.2148 1.7037 1.0183 26 1 4.1303 0.9281 -0.2243 27 1 3.5502 2.2717 -1.2640 28 1 3.8001 -0.2280 -2.3137 29 1 2.3752 0.7725 -2.7411 30 1 1.0611 -3.2812 -1.9947 31 1 -3.4717 -1.8746 -5.4568 32 1 -1.6486 -0.5809 -4.0045 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260681060.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:45 Heat of formation + Delta-G solvation = 93.868788 kcal Electronic energy + Delta-G solvation = -15228.536701 eV Core-core repulsion = 12805.265137 eV Total energy + Delta-G solvation = -2423.271564 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.86081 -37.79736 -33.43243 -31.73774 -30.91622 -29.00346 -27.13516 -25.16346 -24.50055 -21.15943 -20.91087 -19.52214 -18.75778 -16.98842 -16.01879 -15.23254 -14.86954 -14.58810 -13.89716 -13.46050 -12.93522 -12.66388 -12.38907 -11.92812 -11.58482 -11.34732 -11.16385 -11.12841 -11.05113 -10.88197 -10.84453 -10.57735 -10.38419 -9.99994 -9.23294 -8.79452 -8.40124 -7.61068 -7.15064 -6.42393 -3.98748 3.04609 3.20791 3.24794 3.38361 3.84744 4.14768 4.38149 4.41892 4.83824 4.92273 5.20117 5.50516 5.58953 5.63652 5.88149 5.89632 5.94546 6.00906 6.13132 6.31266 6.38792 6.48346 6.65840 6.89185 7.21809 7.29298 7.34723 7.54727 7.69170 8.15561 8.56908 8.66557 9.06881 9.18215 9.50226 10.57118 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.064753 B = 0.006913 C = 0.006841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.305652 B = 4049.562275 C = 4092.257237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.537 5.537 3 C 0.041 3.959 4 C -0.126 4.126 5 C -0.147 4.147 6 C 0.327 3.673 7 H 0.102 0.898 8 N -0.400 5.400 9 C -0.120 4.120 10 C -0.017 4.017 11 C -0.437 4.437 12 H 0.067 0.933 13 C 0.066 3.934 14 N -0.844 5.844 15 Si 0.914 3.086 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.268 1.268 19 C 0.033 3.967 20 N -0.338 5.338 21 H 0.065 0.935 22 H 0.069 0.931 23 H 0.049 0.951 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.273 0.727 32 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.759 4.031 5.343 9.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.262 5.262 3 C -0.087 4.087 4 C -0.165 4.165 5 C -0.186 4.186 6 C 0.135 3.865 7 H 0.120 0.880 8 N -0.191 5.191 9 C -0.260 4.260 10 C -0.027 4.027 11 C -0.472 4.472 12 H 0.086 0.914 13 C -0.144 4.144 14 N -0.476 5.476 15 Si 0.740 3.260 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.192 1.192 19 C -0.154 4.154 20 N -0.160 5.160 21 H 0.083 0.917 22 H 0.088 0.912 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.156 0.844 31 H 0.084 0.916 32 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 7.193 5.005 6.058 10.653 hybrid contribution -0.966 -1.272 -1.242 2.023 sum 6.227 3.732 4.816 8.712 Atomic orbital electron populations 1.22625 0.86351 1.02780 1.01378 1.64228 1.10131 1.14019 1.37821 1.23040 0.95590 0.90324 0.99783 1.22637 0.97566 0.99330 0.96948 1.23124 0.99404 0.97246 0.98866 1.22295 0.85043 0.96265 0.82857 0.88001 1.47952 1.26353 1.04307 1.40491 1.22168 1.05281 0.86854 1.11704 1.18204 0.93882 0.93585 0.97043 1.18739 1.10946 0.92822 1.24707 0.91428 1.25627 0.96752 0.96475 0.95506 1.69447 1.24519 1.20879 1.32718 0.86221 0.79632 0.81701 0.78404 1.20011 1.20663 1.19198 1.25106 0.98530 0.93049 0.98729 1.76372 1.05787 1.19546 1.14305 0.91655 0.91230 0.93189 0.93296 0.90661 0.90888 0.90916 0.90900 0.89671 0.84400 0.91636 0.78263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.35 60.07 0.50 0.83 16 2 N -0.54 -9.30 5.44 -235.31 -1.28 -10.58 16 3 C 0.04 0.59 6.73 -2.30 -0.02 0.57 16 4 C -0.13 -1.60 7.08 -24.59 -0.17 -1.78 16 5 C -0.15 -2.31 6.62 -24.91 -0.16 -2.47 16 6 C 0.33 5.95 4.21 -125.91 -0.53 5.42 16 7 H 0.10 1.74 8.07 -51.93 -0.42 1.32 16 8 N -0.40 -8.96 2.07 -55.86 -0.12 -9.08 16 9 C -0.12 -2.93 11.50 -15.99 -0.18 -3.11 16 10 C -0.02 -0.47 5.93 -106.83 -0.63 -1.10 16 11 C -0.44 -11.99 9.40 -37.76 -0.35 -12.34 16 12 H 0.07 1.79 7.84 -52.49 -0.41 1.38 16 13 C 0.07 1.73 5.49 -17.35 -0.10 1.64 16 14 N -0.84 -22.37 10.32 55.54 0.57 -21.79 16 15 Si 0.91 19.76 29.56 -169.99 -5.02 14.73 16 16 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 17 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 C 0.03 0.88 10.91 -16.80 -0.18 0.70 16 20 N -0.34 -8.27 9.23 30.97 0.29 -7.99 16 21 H 0.06 1.38 7.80 -51.93 -0.41 0.98 16 22 H 0.07 1.49 5.53 -51.93 -0.29 1.20 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.05 0.75 7.78 -51.93 -0.40 0.35 16 25 H 0.08 0.94 8.14 -51.92 -0.42 0.52 16 26 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.08 1.56 7.59 -51.93 -0.39 1.16 16 30 H 0.14 3.06 8.06 -52.49 -0.42 2.63 16 31 H 0.27 6.68 8.30 -40.82 -0.34 6.34 16 32 H 0.20 5.48 5.77 -52.49 -0.30 5.18 16 LS Contribution 261.62 15.07 3.94 3.94 Total: -1.00 -28.16 261.62 -7.75 -35.91 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.30 Total: 6.49 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: -1.83 Total: -11.64 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.54 Total: -49.43 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.16 -7.75 -35.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260681060.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.779 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds