Wall clock time and date at job start Mon Mar 30 2020 02:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47843 * 110.99570 * 2 1 4 4 C 1.54914 * 104.79572 * 146.36042 * 3 2 1 5 5 C 1.55391 * 101.74075 * 323.01874 * 4 3 2 6 6 C 1.47453 * 110.99918 * 120.83844 * 2 1 3 7 7 H 1.08995 * 109.88644 * 117.17968 * 6 2 1 8 8 N 1.46499 * 109.88609 * 356.15000 * 6 2 1 9 9 C 1.34503 * 125.67636 * 112.84961 * 8 6 2 10 10 C 1.39270 * 107.19155 * 180.14249 * 9 8 6 11 11 C 1.41597 * 126.56120 * 179.87496 * 10 9 8 12 12 H 1.08001 * 119.99778 * 359.70812 * 11 10 9 13 13 C 1.39696 * 120.00423 * 179.71444 * 11 10 9 14 14 N 1.31026 * 119.99502 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00143 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46752 * 269.99639 * 15 13 11 17 17 H 1.48498 * 109.47494 * 29.99154 * 15 13 11 18 18 H 1.48499 * 109.47533 * 149.99687 * 15 13 11 19 19 C 1.41882 * 106.88551 * 359.60810 * 10 9 8 20 20 N 1.30316 * 108.04543 * 0.24179 * 19 10 9 21 21 H 1.08996 * 109.47442 * 305.28712 * 1 2 3 22 22 H 1.08998 * 109.47102 * 65.29144 * 1 2 3 23 23 H 1.09005 * 109.47205 * 185.28784 * 1 2 3 24 24 H 1.09005 * 110.37182 * 265.18446 * 3 2 1 25 25 H 1.09003 * 110.37818 * 27.42087 * 3 2 1 26 26 H 1.09008 * 110.98645 * 81.02059 * 4 3 2 27 27 H 1.09000 * 110.98864 * 204.79403 * 4 3 2 28 28 H 1.09006 * 110.67848 * 277.17497 * 5 4 3 29 29 H 1.09004 * 110.84589 * 153.86396 * 5 4 3 30 30 H 1.08002 * 126.40349 * 0.02562 * 9 8 6 31 31 H 0.97006 * 119.99413 * 180.02562 * 14 13 11 32 32 H 1.08001 * 125.98144 * 180.20718 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3803 0.0000 4 6 3.3046 1.3028 0.8297 5 6 2.9180 0.2791 1.9329 6 6 1.9974 -0.7057 1.1820 7 1 2.5673 -1.5800 0.8677 8 7 0.8927 -1.1172 2.0518 9 6 0.5155 -2.3854 2.2939 10 6 -0.5691 -2.3329 3.1659 11 6 -1.2874 -3.4367 3.6860 12 1 -1.0093 -4.4421 3.4064 13 6 -2.3559 -3.2254 4.5608 14 7 -2.6930 -2.0056 4.9003 15 14 -3.3029 -4.6817 5.2475 16 1 -4.4331 -5.0088 4.3414 17 1 -2.3985 -5.8546 5.3540 18 1 -3.8302 -4.3394 6.5929 19 6 -0.8129 -0.9620 3.4383 20 7 0.0584 -0.2571 2.7733 21 1 -0.3634 0.5936 0.8388 22 1 -0.3633 0.4296 -0.9336 23 1 -0.3634 -1.0233 0.0947 24 1 2.2147 1.7038 -1.0183 25 1 1.2879 2.0596 0.4706 26 1 4.1301 0.9283 0.2243 27 1 3.5497 2.2723 1.2634 28 1 2.3780 0.7708 2.7422 29 1 3.8017 -0.2333 2.3134 30 1 0.9679 -3.2775 1.8865 31 1 -3.4347 -1.8589 5.5081 32 1 -1.5856 -0.5709 4.0836 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260681063.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:47 Heat of formation + Delta-G solvation = 74.620065 kcal Electronic energy + Delta-G solvation = -15228.885115 eV Core-core repulsion = 12804.778864 eV Total energy + Delta-G solvation = -2424.106251 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.59054 -39.32206 -35.36502 -33.05512 -32.61347 -30.96847 -28.69544 -26.61940 -26.40759 -22.74188 -22.19767 -21.41694 -20.50339 -18.84933 -17.50148 -16.85665 -16.63843 -16.09225 -15.42879 -14.91483 -14.62869 -14.46131 -13.82362 -13.51231 -13.28470 -13.17028 -12.84945 -12.67000 -12.52651 -12.43621 -12.25724 -12.08731 -11.77973 -11.73905 -11.14618 -10.75147 -10.03418 -9.37086 -9.10802 -8.35977 -6.02149 1.26558 1.44551 1.55444 1.57901 2.13469 2.33989 2.41339 3.00131 3.56048 3.59105 3.69337 3.98242 4.20535 4.39661 4.46476 4.54096 4.57317 4.70373 4.86792 4.95447 4.97672 5.02364 5.05105 5.25312 5.32624 5.58761 5.71241 5.75324 5.89914 6.12388 6.58471 6.76869 7.09511 7.16660 7.53646 8.64495 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.064603 B = 0.006902 C = 0.006868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 433.313598 B = 4055.543067 C = 4075.812927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.533 5.533 3 C 0.036 3.964 4 C -0.111 4.111 5 C -0.144 4.144 6 C 0.309 3.691 7 H 0.120 0.880 8 N -0.385 5.385 9 C -0.111 4.111 10 C -0.057 4.057 11 C -0.473 4.473 12 H 0.067 0.933 13 C 0.021 3.979 14 N -0.870 5.870 15 Si 0.987 3.013 16 H -0.269 1.269 17 H -0.263 1.263 18 H -0.273 1.273 19 C 0.003 3.997 20 N -0.336 5.336 21 H 0.030 0.970 22 H 0.076 0.924 23 H 0.039 0.961 24 H 0.103 0.897 25 H 0.035 0.965 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.161 0.839 31 H 0.278 0.722 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.252 3.899 -6.529 11.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.258 5.258 3 C -0.092 4.092 4 C -0.149 4.149 5 C -0.184 4.184 6 C 0.119 3.881 7 H 0.138 0.862 8 N -0.175 5.175 9 C -0.253 4.253 10 C -0.067 4.067 11 C -0.508 4.508 12 H 0.085 0.915 13 C -0.186 4.186 14 N -0.502 5.502 15 Si 0.810 3.190 16 H -0.194 1.194 17 H -0.187 1.187 18 H -0.198 1.198 19 C -0.183 4.183 20 N -0.160 5.160 21 H 0.049 0.951 22 H 0.095 0.905 23 H 0.058 0.942 24 H 0.121 0.879 25 H 0.053 0.947 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.178 0.822 31 H 0.088 0.912 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 8.761 4.909 -7.206 12.361 hybrid contribution -1.375 -1.150 1.392 2.270 sum 7.386 3.759 -5.814 10.124 Atomic orbital electron populations 1.22295 0.87616 1.00864 1.00642 1.64282 1.08650 1.16013 1.36896 1.23232 0.96068 0.88119 1.01750 1.22695 0.97186 0.99445 0.95579 1.23124 0.99067 0.97376 0.98806 1.22905 0.84205 0.98034 0.82955 0.86238 1.48336 1.27338 1.03584 1.38251 1.22524 1.04306 0.88336 1.10153 1.18569 0.95825 0.93904 0.98378 1.19011 1.13400 0.92976 1.25405 0.91477 1.26505 0.97412 0.99372 0.95351 1.69563 1.26774 1.22616 1.31243 0.85110 0.78172 0.78059 0.77650 1.19419 1.18695 1.19835 1.24863 0.99257 0.93400 1.00750 1.76381 1.07281 1.19640 1.12674 0.95126 0.90530 0.94214 0.87884 0.94679 0.88278 0.88925 0.92515 0.88813 0.82196 0.91155 0.79852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.30 8.40 127.69 1.07 2.37 16 2 N -0.53 -17.25 5.44 -898.36 -4.89 -22.14 16 3 C 0.04 0.92 6.73 86.78 0.58 1.50 16 4 C -0.11 -2.37 7.08 32.07 0.23 -2.15 16 5 C -0.14 -4.18 6.63 31.86 0.21 -3.97 16 6 C 0.31 10.64 4.21 129.65 0.55 11.19 16 7 H 0.12 3.73 8.08 -2.39 -0.02 3.71 16 8 N -0.38 -17.16 1.95 -330.66 -0.64 -17.81 16 9 C -0.11 -5.42 11.18 84.53 0.94 -4.47 16 10 C -0.06 -3.18 5.93 -21.30 -0.13 -3.30 16 11 C -0.47 -26.66 9.40 23.45 0.22 -26.44 16 12 H 0.07 3.62 7.84 -2.91 -0.02 3.60 16 13 C 0.02 1.11 5.49 85.17 0.47 1.57 16 14 N -0.87 -47.64 10.32 21.79 0.22 -47.41 16 15 Si 0.99 40.94 29.56 68.60 2.03 42.97 16 16 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 18 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 19 C 0.00 0.18 10.91 85.82 0.94 1.11 16 20 N -0.34 -16.91 9.52 -55.94 -0.53 -17.44 16 21 H 0.03 1.30 6.03 -2.39 -0.01 1.29 16 22 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 23 H 0.04 1.70 7.26 -2.38 -0.02 1.68 16 24 H 0.10 2.13 8.14 -2.38 -0.02 2.12 16 25 H 0.03 1.01 7.69 -2.39 -0.02 0.99 16 26 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 27 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 2.02 7.46 -2.38 -0.02 2.00 16 29 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 30 H 0.16 6.95 8.06 -2.91 -0.02 6.93 16 31 H 0.28 13.97 8.30 -92.70 -0.77 13.20 16 32 H 0.19 10.72 5.77 -2.91 -0.02 10.70 16 Total: -1.00 -62.71 261.28 2.37 -60.33 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 1.10 Total: 24.10 kcal Atomic # 6 Polarization: -27.67 SS G_CDS: 5.08 Total: -22.59 kcal Atomic # 7 Polarization: -98.96 SS G_CDS: -5.84 Total: -104.81 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Total: -62.71 2.37 -60.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260681063.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.955 kcal (2) G-P(sol) polarization free energy of solvation -62.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds