Wall clock time and date at job start Mon Mar 30 2020 03:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47129 * 2 1 4 4 C 1.52998 * 109.46788 * 119.99768 * 2 1 3 5 5 C 1.52998 * 109.46933 * 174.99978 * 4 2 1 6 6 C 1.50702 * 109.47027 * 179.97438 * 5 4 2 7 7 C 1.39304 * 126.47702 * 264.68666 * 6 5 4 8 8 C 1.35968 * 108.09580 * 179.89358 * 7 6 5 9 9 N 1.36168 * 109.04754 * 0.37911 * 8 7 6 10 10 C 1.46498 * 125.74119 * 179.76548 * 9 8 7 11 11 C 1.38021 * 108.51413 * 359.76326 * 9 8 7 12 12 C 1.39952 * 126.35422 * 179.97438 * 11 9 8 13 13 H 1.07996 * 120.00273 * 138.31492 * 12 11 9 14 14 C 1.40068 * 119.99578 * 318.31234 * 12 11 9 15 15 N 1.30862 * 120.00337 * 342.71710 * 14 12 11 16 16 Si 1.86807 * 119.99659 * 162.72027 * 14 12 11 17 17 H 1.48495 * 109.47021 * 60.00125 * 16 14 12 18 18 H 1.48494 * 109.47003 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.46970 * 299.99912 * 16 14 12 20 20 H 1.09005 * 109.47104 * 60.00281 * 1 2 3 21 21 H 1.08998 * 109.47415 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47143 * 300.00071 * 1 2 3 23 23 H 1.08993 * 109.47130 * 239.99282 * 2 1 3 24 24 H 1.09001 * 109.47166 * 59.99943 * 3 2 1 25 25 H 1.08995 * 109.47197 * 179.97438 * 3 2 1 26 26 H 1.09005 * 109.46898 * 299.99845 * 3 2 1 27 27 H 1.09002 * 109.47422 * 294.99929 * 4 2 1 28 28 H 1.09000 * 109.47432 * 55.00302 * 4 2 1 29 29 H 1.08996 * 109.47519 * 299.99456 * 5 4 2 30 30 H 1.08995 * 109.47255 * 60.00734 * 5 4 2 31 31 H 1.08000 * 125.94838 * 0.02562 * 7 6 5 32 32 H 1.07997 * 125.47448 * 180.17919 * 8 7 6 33 33 H 1.08993 * 109.47404 * 275.60815 * 10 9 8 34 34 H 1.09003 * 109.47211 * 35.60996 * 10 9 8 35 35 H 1.09002 * 109.46894 * 155.60548 * 10 9 8 36 36 H 0.97003 * 119.99919 * 185.06592 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8310 1.1880 6 6 4.0671 -1.5408 2.4189 7 6 4.5322 -0.9429 3.5879 8 6 4.8877 -1.9288 4.4540 9 7 4.6696 -3.1373 3.8656 10 6 4.9318 -4.4445 4.4727 11 6 4.1601 -2.9232 2.6008 12 6 3.8032 -3.9080 1.6726 13 1 2.8991 -3.8005 1.0919 14 6 4.6189 -5.0330 1.4968 15 7 5.8550 -5.0186 1.9261 16 14 3.9421 -6.5541 0.6495 17 1 3.5127 -6.2035 -0.7281 18 1 4.9968 -7.5977 0.5892 19 1 2.7786 -7.0704 1.4144 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8899 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.7516 -0.1582 2.1370 28 1 1.6054 -1.7198 1.2952 29 1 3.8532 -1.3941 0.3004 30 1 3.9994 0.1675 1.1422 31 1 4.5969 0.1189 3.7745 32 1 5.2828 -1.7778 5.4477 33 1 5.9788 -4.7096 4.3266 34 1 4.7138 -4.3998 5.5398 35 1 4.2976 -5.1967 4.0035 36 1 6.4419 -5.7682 1.7398 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260713742.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:17 Heat of formation + Delta-G solvation = 8.491464 kcal Electronic energy + Delta-G solvation = -15260.694995 eV Core-core repulsion = 12937.261536 eV Total energy + Delta-G solvation = -2323.433459 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.16808 -36.25787 -33.30234 -32.01688 -29.41362 -28.17516 -26.80073 -24.90814 -24.23812 -22.04575 -19.34694 -19.17179 -17.95170 -16.43146 -15.08572 -14.71097 -14.52012 -13.73290 -13.51791 -13.24028 -12.83693 -12.60731 -12.02666 -11.90484 -11.52157 -11.45140 -11.29440 -11.13585 -10.95170 -10.88670 -10.75132 -10.37432 -10.30939 -10.02694 -10.00804 -9.63642 -9.39393 -8.87299 -6.88728 -6.61359 -6.34699 -4.16643 3.04605 3.13354 3.17342 3.92159 4.07906 4.40340 4.69676 5.22289 5.35353 5.41454 5.47711 5.91566 6.03276 6.07551 6.12934 6.16137 6.35633 6.39542 6.45198 6.47703 6.52159 6.58583 6.77441 6.84037 6.86809 6.94579 7.12801 7.24381 7.34501 7.39263 7.76983 7.92952 8.23725 8.43075 8.83309 9.01026 9.24521 9.45889 10.44193 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.023320 B = 0.009609 C = 0.007373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.416884 B = 2913.164201 C = 3796.852750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.145 4.145 4 C -0.103 4.103 5 C -0.011 4.011 6 C -0.288 4.288 7 C -0.174 4.174 8 C -0.115 4.115 9 N -0.447 5.447 10 C 0.109 3.891 11 C 0.249 3.751 12 C -0.474 4.474 13 H 0.084 0.916 14 C 0.077 3.923 15 N -0.828 5.828 16 Si 0.898 3.102 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.268 1.268 20 H 0.045 0.955 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.040 0.960 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.069 0.931 36 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 3.634 -0.873 6.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 C -0.202 4.202 4 C -0.141 4.141 5 C -0.049 4.049 6 C -0.292 4.292 7 C -0.200 4.200 8 C -0.241 4.241 9 N -0.126 5.126 10 C -0.034 4.034 11 C 0.136 3.864 12 C -0.510 4.510 13 H 0.102 0.898 14 C -0.137 4.137 15 N -0.458 5.458 16 Si 0.724 3.276 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.193 1.193 20 H 0.064 0.936 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.141 0.859 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.622 3.195 -0.598 5.651 hybrid contribution -0.023 -0.848 -0.265 0.888 sum -4.646 2.348 -0.863 5.276 Atomic orbital electron populations 1.21835 0.96299 1.01313 1.00736 1.21194 0.94738 0.96190 0.99802 1.21857 1.01516 0.96294 1.00520 1.21636 0.97587 0.99521 0.95340 1.19448 0.92569 0.97128 0.95743 1.19370 1.20264 0.92205 0.97360 1.20090 1.08456 0.95700 0.95717 1.21050 1.18576 0.85015 0.99469 1.44160 1.51564 1.04049 1.12792 1.21513 1.02004 0.85141 0.94706 1.17706 0.93270 0.92237 0.83147 1.18372 1.09355 1.02858 1.20379 0.89803 1.25743 0.94278 0.99031 0.94636 1.69810 1.04750 1.31459 1.39793 0.86528 0.79301 0.81210 0.80569 1.19163 1.20767 1.19322 0.93601 0.92918 0.93145 0.91604 0.93185 0.92250 0.93819 0.93146 0.92317 0.93088 0.94097 0.88229 0.85884 0.91954 0.94167 0.91205 0.91437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.19 37.16 0.34 -1.61 16 2 C -0.10 -1.56 2.92 -90.62 -0.26 -1.82 16 3 C -0.14 -2.02 8.95 37.16 0.33 -1.69 16 4 C -0.10 -1.95 4.66 -26.73 -0.12 -2.07 16 5 C -0.01 -0.24 5.25 -27.88 -0.15 -0.38 16 6 C -0.29 -7.28 5.50 -103.66 -0.57 -7.85 16 7 C -0.17 -4.21 10.74 -40.00 -0.43 -4.64 16 8 C -0.12 -2.78 11.42 -16.44 -0.19 -2.97 16 9 N -0.45 -11.40 3.13 -121.45 -0.38 -11.78 16 10 C 0.11 2.45 9.29 59.85 0.56 3.00 16 11 C 0.25 6.73 6.05 -83.87 -0.51 6.22 16 12 C -0.47 -12.69 8.69 -38.25 -0.33 -13.02 16 13 H 0.08 2.20 7.90 -52.49 -0.41 1.79 16 14 C 0.08 1.96 4.10 -17.28 -0.07 1.89 16 15 N -0.83 -21.73 10.98 55.56 0.61 -21.12 16 16 Si 0.90 19.18 29.60 -169.99 -5.03 14.14 16 17 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 20 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 1.16 8.09 -51.93 -0.42 0.74 16 30 H 0.04 0.82 6.56 -51.93 -0.34 0.48 16 31 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 32 H 0.12 2.60 8.06 -52.49 -0.42 2.17 16 33 H 0.06 1.42 7.42 -51.93 -0.39 1.04 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.60 6.79 -51.93 -0.35 1.25 16 36 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 LS Contribution 292.82 15.07 4.41 4.41 Total: -1.00 -28.14 292.82 -7.83 -35.97 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -6.04 Total: 3.32 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -1.40 Total: -24.94 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.23 Total: -32.91 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.14 -7.83 -35.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260713742.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.465 kcal (2) G-P(sol) polarization free energy of solvation -28.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds