Wall clock time and date at job start Mon Mar 30 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40009 * 126.14523 * 2 1 4 4 C 1.31692 * 109.06338 * 180.02562 * 3 2 1 5 5 N 1.39905 * 125.54432 * 179.97438 * 4 3 2 6 6 C 1.47845 * 110.99955 * 239.17925 * 5 4 3 7 7 C 1.54908 * 104.79717 * 146.35917 * 6 5 4 8 8 C 1.55147 * 101.65049 * 322.93105 * 7 6 5 9 9 C 1.47439 * 110.99507 * 0.02562 * 5 4 3 10 10 C 1.39242 * 108.91986 * 0.22193 * 4 3 2 11 11 C 1.37522 * 126.13878 * 180.02562 * 2 1 3 12 12 C 1.40220 * 126.60124 * 0.02562 * 11 2 1 13 13 H 1.07994 * 120.00067 * 359.97438 * 12 11 2 14 14 C 1.40147 * 120.00219 * 179.97438 * 12 11 2 15 15 N 1.30773 * 119.99837 * 0.02562 * 14 12 11 16 16 Si 1.86790 * 120.00148 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47288 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47139 * 120.00266 * 16 14 12 19 19 H 1.48501 * 109.47293 * 240.00088 * 16 14 12 20 20 H 1.08994 * 109.47190 * 89.97157 * 1 2 3 21 21 H 1.09002 * 109.47403 * 209.97677 * 1 2 3 22 22 H 1.08998 * 109.46850 * 329.97356 * 1 2 3 23 23 H 1.09005 * 110.37246 * 27.52874 * 6 5 4 24 24 H 1.08998 * 110.37354 * 265.19111 * 6 5 4 25 25 H 1.08996 * 110.99351 * 204.83721 * 7 6 5 26 26 H 1.09002 * 110.98650 * 81.01419 * 7 6 5 27 27 H 1.09000 * 110.70281 * 154.03642 * 8 7 6 28 28 H 1.08996 * 110.70548 * 277.09303 * 8 7 6 29 29 H 1.09003 * 109.88723 * 117.34150 * 9 5 4 30 30 H 1.08999 * 109.89041 * 356.15540 * 9 5 4 31 31 H 1.08003 * 126.25601 * 179.77401 * 10 4 3 32 32 H 0.97001 * 119.99978 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2908 1.1306 0.0000 4 6 3.5496 0.7438 -0.0006 5 7 4.6614 1.5930 -0.0012 6 6 5.5112 1.3524 -1.1869 7 6 6.0921 2.7428 -1.5460 8 6 4.8913 3.6743 -1.2337 9 6 4.2457 3.0076 -0.0007 10 6 3.5943 -0.6479 -0.0060 11 6 2.2760 -1.1106 -0.0005 12 6 1.8600 -2.4497 -0.0016 13 1 0.8066 -2.6878 -0.0017 14 6 2.8111 -3.4790 -0.0025 15 7 4.0866 -3.1906 -0.0019 16 14 2.2568 -5.2628 -0.0033 17 1 0.7729 -5.3201 -0.0033 18 1 2.7780 -5.9426 -1.2164 19 1 2.7789 -5.9439 1.2087 20 1 -0.3633 0.0005 -1.0276 21 1 -0.3634 -0.8902 0.5135 22 1 -0.3633 0.8897 0.5142 23 1 4.9115 0.9672 -2.0117 24 1 6.3143 0.6569 -0.9434 25 1 6.3611 2.7930 -2.6011 26 1 6.9474 2.9835 -0.9146 27 1 5.2362 4.6796 -0.9919 28 1 4.1943 3.6985 -2.0713 29 1 4.5935 3.4959 0.9097 30 1 3.1599 3.0750 -0.0685 31 1 4.4852 -1.2584 -0.0112 32 1 4.7449 -3.9031 -0.0021 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261003000.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:11 Heat of formation + Delta-G solvation = 75.674307 kcal Electronic energy + Delta-G solvation = -15097.453407 eV Core-core repulsion = 12673.392871 eV Total energy + Delta-G solvation = -2424.060536 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.35458 -37.58696 -33.64570 -32.25063 -29.61747 -28.94975 -28.24158 -25.16698 -24.51390 -21.31411 -20.78897 -19.46855 -18.21922 -16.86712 -15.86695 -15.22709 -14.59959 -14.10151 -13.90118 -13.18813 -12.98557 -12.51201 -12.49075 -12.08505 -11.74238 -11.48284 -11.35583 -11.03387 -10.93779 -10.75279 -10.69898 -10.52715 -10.28071 -9.77672 -9.48801 -8.84383 -8.34476 -7.23553 -6.61336 -6.51705 -4.46697 2.92657 3.06983 3.11669 3.58689 3.86593 4.09064 4.42155 4.88649 5.07990 5.19929 5.35032 5.45404 5.83111 5.84348 5.89884 6.07393 6.16042 6.16817 6.26095 6.33902 6.47505 6.52369 6.64034 6.93807 7.07546 7.45725 7.47405 7.69211 8.00227 8.28010 8.52992 8.82702 8.96925 9.24656 9.68210 10.26877 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036837 B = 0.008483 C = 0.007122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.925834 B = 3300.010155 C = 3930.595805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.134 3.866 2 N -0.432 5.432 3 N -0.421 5.421 4 C 0.237 3.763 5 N -0.446 5.446 6 C 0.058 3.942 7 C -0.131 4.131 8 C -0.139 4.139 9 C 0.036 3.964 10 C -0.351 4.351 11 C 0.259 3.741 12 C -0.450 4.450 13 H 0.075 0.925 14 C 0.077 3.923 15 N -0.783 5.783 16 Si 0.923 3.077 17 H -0.263 1.263 18 H -0.273 1.273 19 H -0.273 1.273 20 H 0.042 0.958 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.161 0.839 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.875 4.393 -2.363 5.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.222 5.222 3 N -0.250 5.250 4 C -0.014 4.014 5 N -0.168 5.168 6 C -0.069 4.069 7 C -0.169 4.169 8 C -0.178 4.178 9 C -0.091 4.091 10 C -0.383 4.383 11 C 0.140 3.860 12 C -0.487 4.487 13 H 0.094 0.906 14 C -0.143 4.143 15 N -0.410 5.410 16 Si 0.748 3.252 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.198 1.198 20 H 0.061 0.939 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.099 0.901 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.178 0.822 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.507 5.225 -1.903 5.584 hybrid contribution -0.216 -1.362 -0.593 1.501 sum 0.291 3.863 -2.497 4.608 Atomic orbital electron populations 1.21139 0.77759 1.01660 1.00359 1.48051 1.03659 1.03430 1.67089 1.76734 1.00257 1.08709 1.39284 1.20445 0.88392 0.93071 0.99525 1.60985 1.14805 1.02717 1.38271 1.22962 0.96362 0.96573 0.91033 1.22743 0.97930 0.95291 1.00908 1.22760 0.97477 0.98876 0.98671 1.22806 1.01297 0.87977 0.97068 1.21775 0.97801 0.90028 1.28668 1.18713 0.88618 0.86917 0.91722 1.18644 0.94337 0.88464 1.47232 0.90645 1.25754 0.94337 1.01534 0.92651 1.69756 1.01413 1.34300 1.35488 0.86023 0.79812 0.80857 0.78525 1.18659 1.19860 1.19813 0.93912 0.91257 0.92119 0.93111 0.90059 0.91214 0.90910 0.91352 0.91830 0.91416 0.90098 0.82177 0.91123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.72 11.27 59.85 0.67 3.40 16 2 N -0.43 -11.27 4.09 -65.40 -0.27 -11.54 16 3 N -0.42 -11.16 10.75 31.22 0.34 -10.83 16 4 C 0.24 6.22 6.30 -154.69 -0.97 5.25 16 5 N -0.45 -9.92 5.28 -169.85 -0.90 -10.82 16 6 C 0.06 1.11 6.41 -2.30 -0.01 1.10 16 7 C -0.13 -1.92 7.08 -24.59 -0.17 -2.09 16 8 C -0.14 -2.12 6.94 -24.90 -0.17 -2.29 16 9 C 0.04 0.69 6.83 -2.83 -0.02 0.67 16 10 C -0.35 -9.96 9.42 -38.66 -0.36 -10.32 16 11 C 0.26 7.28 6.75 -84.02 -0.57 6.72 16 12 C -0.45 -12.01 9.01 -38.12 -0.34 -12.36 16 13 H 0.08 1.88 7.20 -52.49 -0.38 1.50 16 14 C 0.08 1.93 5.50 -17.29 -0.10 1.84 16 15 N -0.78 -20.39 10.29 55.56 0.57 -19.81 16 16 Si 0.92 18.60 29.56 -169.99 -5.03 13.58 16 17 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 18 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 21 H 0.07 1.30 7.39 -51.93 -0.38 0.92 16 22 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.05 1.06 7.79 -51.93 -0.40 0.65 16 24 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.08 1.71 6.29 -51.93 -0.33 1.38 16 31 H 0.16 4.69 5.72 -52.48 -0.30 4.39 16 32 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 LS Contribution 264.61 15.07 3.99 3.99 Total: -1.00 -30.71 264.61 -7.65 -38.36 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -4.31 Total: 5.15 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -2.05 Total: -8.09 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.26 Total: -52.99 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.71 -7.65 -38.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261003000.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.038 kcal (2) G-P(sol) polarization free energy of solvation -30.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds