Wall clock time and date at job start Mon Mar 30 2020 02:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40285 * 126.15956 * 2 1 4 4 C 1.30451 * 109.06757 * 179.97438 * 3 2 1 5 5 C 1.39525 * 108.97396 * 359.82283 * 4 3 2 6 6 C 1.37756 * 126.16659 * 180.02562 * 2 1 3 7 7 C 1.40239 * 126.73586 * 359.93386 * 6 2 1 8 8 H 1.07999 * 119.99786 * 138.59826 * 7 6 2 9 9 C 1.40159 * 120.00192 * 318.85972 * 7 6 2 10 10 N 1.30759 * 120.00363 * 342.47241 * 9 7 6 11 11 Si 1.86808 * 119.99804 * 162.46619 * 9 7 6 12 12 H 1.48499 * 109.47104 * 0.02562 * 11 9 7 13 13 H 1.48492 * 109.47095 * 120.00604 * 11 9 7 14 14 H 1.48509 * 109.46830 * 240.00448 * 11 9 7 15 15 C 1.50775 * 123.28927 * 179.31834 * 5 4 3 16 16 N 1.47336 * 108.14608 * 344.31263 * 15 5 4 17 17 C 1.46896 * 111.00267 * 287.01744 * 16 15 5 18 18 C 1.46882 * 111.58359 * 51.40018 * 16 15 5 19 19 C 1.51161 * 128.60928 * 180.20089 * 4 3 2 20 20 H 1.08994 * 109.47124 * 274.05861 * 1 2 3 21 21 H 1.09001 * 109.47267 * 34.06580 * 1 2 3 22 22 H 1.09002 * 109.46557 * 154.05973 * 1 2 3 23 23 H 0.97000 * 120.00039 * 175.09593 * 10 9 7 24 24 H 1.08995 * 109.90058 * 224.53049 * 15 5 4 25 25 H 1.09004 * 109.55082 * 103.88584 * 15 5 4 26 26 H 1.08994 * 109.47479 * 188.66003 * 17 16 15 27 27 H 1.08991 * 109.47123 * 308.66670 * 17 16 15 28 28 H 1.09008 * 109.46909 * 68.66090 * 17 16 15 29 29 H 1.08999 * 109.40181 * 167.15337 * 18 16 15 30 30 H 1.08999 * 109.33271 * 47.35917 * 18 16 15 31 31 H 1.08991 * 109.81165 * 283.46263 * 19 4 3 32 32 H 1.08996 * 109.80931 * 44.29740 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2928 1.1326 0.0000 4 6 3.5397 0.7492 0.0006 5 6 3.5855 -0.6453 0.0050 6 6 2.2780 -1.1121 -0.0005 7 6 1.8657 -2.4525 0.0002 8 1 2.3769 -3.1750 -0.6187 9 6 0.7867 -2.8535 0.7999 10 7 0.3846 -2.0930 1.7846 11 14 -0.0772 -4.4743 0.4586 12 1 0.5651 -5.1429 -0.7014 13 1 0.0246 -5.3505 1.6532 14 1 -1.5077 -4.2180 0.1531 15 6 4.8722 -1.4310 -0.0082 16 7 5.9615 -0.5211 -0.4036 17 6 5.8871 -0.2018 -1.8355 18 6 5.9653 0.7024 0.4091 19 6 4.7884 1.6010 0.0049 20 1 -0.3633 0.0727 1.0250 21 1 -0.3634 0.8513 -0.5756 22 1 -0.3632 -0.9242 -0.4496 23 1 -0.4054 -2.3349 2.2929 24 1 4.7992 -2.2505 -0.7231 25 1 5.0675 -1.8279 0.9881 26 1 6.7830 0.3427 -2.1334 27 1 5.8150 -1.1250 -2.4103 28 1 5.0078 0.4139 -2.0252 29 1 6.9011 1.2387 0.2517 30 1 5.8730 0.4364 1.4621 31 1 4.9605 2.0095 -0.9908 32 1 4.6790 2.4133 0.7234 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261008902.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:20 Heat of formation + Delta-G solvation = 68.004990 kcal Electronic energy + Delta-G solvation = -15543.119961 eV Core-core repulsion = 13118.726858 eV Total energy + Delta-G solvation = -2424.393102 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.72716 -37.02161 -33.78444 -31.52679 -30.64303 -28.92552 -27.21937 -25.66241 -24.71701 -22.37365 -20.80432 -19.65407 -17.56284 -16.76825 -15.23442 -14.95295 -14.44441 -14.28947 -14.01202 -13.57991 -12.82392 -12.77285 -12.36218 -11.84470 -11.63938 -11.42904 -11.35606 -11.20609 -11.07544 -10.91655 -10.69450 -10.57176 -10.37992 -10.01042 -9.15879 -8.94972 -7.62593 -7.56954 -6.87181 -6.70586 -4.60676 2.88823 3.05490 3.11112 3.55686 3.91280 4.05768 4.12637 4.76037 4.97683 5.47031 5.67172 5.79319 5.87710 6.08939 6.13979 6.21452 6.35390 6.40321 6.44966 6.53034 6.62148 6.69434 6.76036 6.93826 7.11452 7.26413 7.50447 7.68549 7.76950 7.98468 8.29189 8.39200 8.71812 9.07004 9.46817 10.17605 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036893 B = 0.010149 C = 0.008686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.766319 B = 2758.287495 C = 3222.848706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.143 3.857 2 N -0.395 5.395 3 N -0.367 5.367 4 C 0.076 3.924 5 C -0.391 4.391 6 C 0.305 3.695 7 C -0.476 4.476 8 H 0.092 0.908 9 C 0.082 3.918 10 N -0.810 5.810 11 Si 0.904 3.096 12 H -0.260 1.260 13 H -0.274 1.274 14 H -0.274 1.274 15 C 0.164 3.836 16 N -0.540 5.540 17 C 0.026 3.974 18 C 0.064 3.936 19 C -0.065 4.065 20 H 0.061 0.939 21 H 0.047 0.953 22 H 0.069 0.931 23 H 0.280 0.720 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.509 1.006 -2.892 4.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 N -0.180 5.180 3 N -0.189 5.189 4 C -0.089 4.089 5 C -0.405 4.405 6 C 0.182 3.818 7 C -0.513 4.513 8 H 0.110 0.890 9 C -0.135 4.135 10 N -0.439 5.439 11 Si 0.728 3.272 12 H -0.184 1.184 13 H -0.200 1.200 14 H -0.199 1.199 15 C 0.036 3.964 16 N -0.262 5.262 17 C -0.123 4.123 18 C -0.065 4.065 19 C -0.106 4.106 20 H 0.079 0.921 21 H 0.065 0.935 22 H 0.088 0.912 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.931 1.784 -2.598 4.304 hybrid contribution -1.103 -0.977 -0.089 1.476 sum 1.828 0.808 -2.687 3.349 Atomic orbital electron populations 1.21271 0.76850 1.00449 1.01423 1.48786 1.04535 1.03113 1.61533 1.76478 1.00801 1.09874 1.31789 1.21323 0.92538 0.93833 1.01197 1.20409 0.94682 0.92935 1.32462 1.18006 0.87269 0.87725 0.88788 1.18604 1.15837 0.91959 1.24878 0.89024 1.25782 0.96229 0.98825 0.92694 1.69853 1.21539 1.38778 1.13738 0.86333 0.79326 0.82033 0.79512 1.18360 1.19986 1.19882 1.20057 0.84612 0.92529 0.99237 1.62508 1.45457 1.14582 1.03624 1.22284 0.99865 1.00715 0.89397 1.22059 0.95927 0.90224 0.98279 1.20566 0.91596 0.97119 1.01338 0.92065 0.93470 0.91219 0.90963 0.92138 0.92244 0.92770 0.92274 0.94673 0.91284 0.91005 0.91376 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.27 9.66 59.85 0.58 3.85 16 2 N -0.40 -10.43 4.05 -65.57 -0.27 -10.70 16 3 N -0.37 -9.67 12.52 33.66 0.42 -9.25 16 4 C 0.08 1.83 6.42 -82.47 -0.53 1.30 16 5 C -0.39 -9.77 5.63 -103.88 -0.58 -10.36 16 6 C 0.30 8.18 6.10 -84.23 -0.51 7.67 16 7 C -0.48 -12.35 8.91 -38.11 -0.34 -12.69 16 8 H 0.09 2.30 7.91 -52.49 -0.41 1.89 16 9 C 0.08 1.99 4.18 -17.29 -0.07 1.92 16 10 N -0.81 -20.54 10.97 55.56 0.61 -19.93 16 11 Si 0.90 18.21 29.60 -169.99 -5.03 13.18 16 12 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 13 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 14 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 15 C 0.16 3.53 6.01 -4.70 -0.03 3.50 16 16 N -0.54 -10.01 5.19 -243.64 -1.26 -11.28 16 17 C 0.03 0.44 8.95 60.06 0.54 0.98 16 18 C 0.06 1.11 5.94 -3.58 -0.02 1.09 16 19 C -0.07 -1.24 5.72 -27.40 -0.16 -1.40 16 20 H 0.06 1.42 7.37 -51.93 -0.38 1.04 16 21 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 22 H 0.07 1.55 6.95 -51.93 -0.36 1.19 16 23 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 24 H 0.06 1.28 7.91 -51.93 -0.41 0.87 16 25 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.96 7.93 -51.93 -0.41 0.55 16 28 H 0.03 0.66 5.49 -51.92 -0.29 0.38 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.28 8.05 -51.93 -0.42 0.86 16 31 H 0.07 1.20 6.90 -51.93 -0.36 0.84 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 258.69 15.07 3.90 3.90 Total: -1.00 -29.19 258.69 -7.05 -36.25 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -4.29 Total: 1.97 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -1.13 Total: -4.14 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.50 Total: -51.15 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.19 -7.05 -36.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008902.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.252 kcal (2) G-P(sol) polarization free energy of solvation -29.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds