Wall clock time and date at job start Mon Mar 30 2020 02:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 N 1.40285 * 126.15956 * 2 1 4 4 C 1.30451 * 109.06757 * 179.97438 * 3 2 1 5 5 C 1.39525 * 108.97396 * 359.82283 * 4 3 2 6 6 C 1.37756 * 126.16659 * 180.02562 * 2 1 3 7 7 C 1.40239 * 126.73586 * 359.93386 * 6 2 1 8 8 H 1.07999 * 119.99786 * 138.59826 * 7 6 2 9 9 C 1.40159 * 120.00192 * 318.85972 * 7 6 2 10 10 N 1.30759 * 120.00363 * 342.47241 * 9 7 6 11 11 Si 1.86808 * 119.99804 * 162.46619 * 9 7 6 12 12 H 1.48499 * 109.47104 * 0.02562 * 11 9 7 13 13 H 1.48492 * 109.47095 * 120.00604 * 11 9 7 14 14 H 1.48509 * 109.46830 * 240.00448 * 11 9 7 15 15 C 1.50775 * 123.28927 * 179.31834 * 5 4 3 16 16 N 1.47336 * 108.14608 * 344.31263 * 15 5 4 17 17 C 1.46896 * 111.00267 * 287.01744 * 16 15 5 18 18 C 1.46882 * 111.58359 * 51.40018 * 16 15 5 19 19 C 1.51161 * 128.60928 * 180.20089 * 4 3 2 20 20 H 1.08994 * 109.47124 * 274.05861 * 1 2 3 21 21 H 1.09001 * 109.47267 * 34.06580 * 1 2 3 22 22 H 1.09002 * 109.46557 * 154.05973 * 1 2 3 23 23 H 0.97000 * 120.00039 * 175.09593 * 10 9 7 24 24 H 1.08995 * 109.90058 * 224.53049 * 15 5 4 25 25 H 1.09004 * 109.55082 * 103.88584 * 15 5 4 26 26 H 1.08994 * 109.47479 * 188.66003 * 17 16 15 27 27 H 1.08991 * 109.47123 * 308.66670 * 17 16 15 28 28 H 1.09008 * 109.46909 * 68.66090 * 17 16 15 29 29 H 1.08999 * 109.40181 * 167.15337 * 18 16 15 30 30 H 1.08999 * 109.33271 * 47.35917 * 18 16 15 31 31 H 1.08991 * 109.81165 * 283.46263 * 19 4 3 32 32 H 1.08996 * 109.80931 * 44.29740 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2928 1.1326 0.0000 4 6 3.5397 0.7492 0.0006 5 6 3.5855 -0.6453 0.0050 6 6 2.2780 -1.1121 -0.0005 7 6 1.8657 -2.4525 0.0002 8 1 2.3769 -3.1750 -0.6187 9 6 0.7867 -2.8535 0.7999 10 7 0.3846 -2.0930 1.7846 11 14 -0.0772 -4.4743 0.4586 12 1 0.5651 -5.1429 -0.7014 13 1 0.0246 -5.3505 1.6532 14 1 -1.5077 -4.2180 0.1531 15 6 4.8722 -1.4310 -0.0082 16 7 5.9615 -0.5211 -0.4036 17 6 5.8871 -0.2018 -1.8355 18 6 5.9653 0.7024 0.4091 19 6 4.7884 1.6010 0.0049 20 1 -0.3633 0.0727 1.0250 21 1 -0.3634 0.8513 -0.5756 22 1 -0.3632 -0.9242 -0.4496 23 1 -0.4054 -2.3349 2.2929 24 1 4.7992 -2.2505 -0.7231 25 1 5.0675 -1.8279 0.9881 26 1 6.7830 0.3427 -2.1334 27 1 5.8150 -1.1250 -2.4103 28 1 5.0078 0.4139 -2.0252 29 1 6.9011 1.2387 0.2517 30 1 5.8730 0.4364 1.4621 31 1 4.9605 2.0095 -0.9908 32 1 4.6790 2.4133 0.7234 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261008902.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:20 Heat of formation + Delta-G solvation = 47.842701 kcal Electronic energy + Delta-G solvation = -15543.994263 eV Core-core repulsion = 13118.726858 eV Total energy + Delta-G solvation = -2425.267405 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.53553 -38.63325 -35.66175 -33.30117 -32.39770 -30.64296 -28.92323 -27.22835 -26.58800 -24.08500 -22.37905 -21.54684 -19.32181 -18.61490 -17.04877 -16.58079 -16.09578 -15.92408 -15.69280 -15.26648 -14.54648 -14.38714 -14.07150 -13.54959 -13.29910 -13.23125 -12.91254 -12.79885 -12.70874 -12.51431 -12.36226 -12.15942 -11.96024 -11.64210 -11.02870 -10.82358 -9.51678 -9.14051 -8.75517 -8.60266 -6.56858 1.23506 1.40425 1.54682 1.69435 2.20438 2.23314 2.28473 3.06511 3.28471 3.86346 4.20326 4.27050 4.41935 4.52387 4.57081 4.69909 4.80018 4.82705 4.87223 4.95815 5.08106 5.11725 5.17501 5.19806 5.23213 5.47151 5.64112 5.86668 6.26644 6.32996 6.38074 6.54104 6.80216 7.13833 7.54051 8.34080 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036893 B = 0.010149 C = 0.008686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.766319 B = 2758.287495 C = 3222.848706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.146 3.854 2 N -0.412 5.412 3 N -0.398 5.398 4 C 0.070 3.930 5 C -0.410 4.410 6 C 0.271 3.729 7 C -0.502 4.502 8 H 0.090 0.910 9 C 0.048 3.952 10 N -0.840 5.840 11 Si 0.978 3.022 12 H -0.258 1.258 13 H -0.271 1.271 14 H -0.262 1.262 15 C 0.171 3.829 16 N -0.535 5.535 17 C 0.029 3.971 18 C 0.067 3.933 19 C -0.062 4.062 20 H 0.052 0.948 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.288 0.712 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.013 0.987 29 H 0.111 0.889 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.332 0.813 -3.358 5.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.197 5.197 3 N -0.221 5.221 4 C -0.095 4.095 5 C -0.423 4.423 6 C 0.148 3.852 7 C -0.539 4.539 8 H 0.107 0.893 9 C -0.167 4.167 10 N -0.469 5.469 11 Si 0.799 3.201 12 H -0.181 1.181 13 H -0.196 1.196 14 H -0.186 1.186 15 C 0.042 3.958 16 N -0.256 5.256 17 C -0.120 4.120 18 C -0.062 4.062 19 C -0.103 4.103 20 H 0.071 0.929 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.032 0.968 29 H 0.129 0.871 30 H 0.080 0.920 31 H 0.103 0.897 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.764 1.610 -3.066 5.115 hybrid contribution -1.325 -0.867 0.073 1.585 sum 2.439 0.743 -2.994 3.932 Atomic orbital electron populations 1.21294 0.75820 1.01303 1.01206 1.49064 1.05466 1.03127 1.62008 1.76404 1.01902 1.10450 1.33340 1.22145 0.93427 0.94529 0.99366 1.20956 0.95391 0.93948 1.32019 1.18534 0.88477 0.88502 0.89676 1.18800 1.17366 0.91869 1.25830 0.89251 1.26566 0.96105 1.02238 0.91742 1.69895 1.22046 1.40665 1.14265 0.85222 0.78393 0.77285 0.79248 1.18141 1.19622 1.18630 1.19949 0.84305 0.92882 0.98696 1.62547 1.43343 1.14964 1.04768 1.22334 1.00504 1.00855 0.88258 1.22184 0.96999 0.89564 0.97486 1.20755 0.89695 0.97055 1.02747 0.92931 0.91429 0.91250 0.90123 0.92470 0.93236 0.89267 0.92200 0.96845 0.87064 0.91983 0.89688 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 6.78 9.66 127.77 1.23 8.02 16 2 N -0.41 -22.15 4.05 -361.35 -1.46 -23.61 16 3 N -0.40 -21.18 12.52 -47.41 -0.59 -21.77 16 4 C 0.07 3.36 6.42 43.22 0.28 3.64 16 5 C -0.41 -20.69 5.63 -19.39 -0.11 -20.80 16 6 C 0.27 14.86 6.10 38.84 0.24 15.09 16 7 C -0.50 -26.52 8.91 23.22 0.21 -26.32 16 8 H 0.09 4.59 7.91 -2.91 -0.02 4.57 16 9 C 0.05 2.35 4.18 85.32 0.36 2.71 16 10 N -0.84 -42.88 10.97 21.87 0.24 -42.64 16 11 Si 0.98 37.04 29.60 68.60 2.03 39.07 16 12 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 13 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 14 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 15 C 0.17 7.33 6.01 85.50 0.51 7.85 16 16 N -0.53 -18.77 5.19 -924.76 -4.80 -23.57 16 17 C 0.03 0.90 8.95 127.69 1.14 2.05 16 18 C 0.07 2.11 5.94 86.47 0.51 2.62 16 19 C -0.06 -2.22 5.72 30.16 0.17 -2.05 16 20 H 0.05 2.49 7.37 -2.39 -0.02 2.47 16 21 H 0.07 2.76 8.14 -2.39 -0.02 2.75 16 22 H 0.07 3.14 6.95 -2.39 -0.02 3.13 16 23 H 0.29 13.31 8.30 -92.71 -0.77 12.55 16 24 H 0.06 2.44 7.91 -2.39 -0.02 2.43 16 25 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.06 1.85 7.93 -2.39 -0.02 1.83 16 28 H 0.01 0.47 5.49 -2.38 -0.01 0.46 16 29 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.06 2.10 8.05 -2.39 -0.02 2.08 16 31 H 0.08 2.78 6.90 -2.39 -0.02 2.76 16 32 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -63.04 258.69 1.07 -61.97 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 1.11 Total: 17.74 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 4.55 Total: -7.19 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -6.61 Total: -111.59 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Total: -63.04 1.07 -61.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261008902.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.814 kcal (2) G-P(sol) polarization free energy of solvation -63.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds