Wall clock time and date at job start Mon Mar 30 2020 02:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40283 * 126.16005 * 2 1 4 4 C 1.30528 * 109.10314 * 179.97438 * 3 2 1 5 5 C 1.39525 * 108.86892 * 0.11322 * 4 3 2 6 6 C 1.37767 * 126.16569 * 179.97438 * 2 1 3 7 7 C 1.40237 * 126.75920 * 359.96197 * 6 2 1 8 8 H 1.07993 * 119.99939 * 218.24608 * 7 6 2 9 9 C 1.40163 * 119.99658 * 38.24913 * 7 6 2 10 10 N 1.30767 * 120.00377 * 18.72973 * 9 7 6 11 11 Si 1.86804 * 119.99784 * 198.73133 * 9 7 6 12 12 H 1.48493 * 109.47400 * 59.99830 * 11 9 7 13 13 H 1.48506 * 109.47020 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47104 * 299.99544 * 11 9 7 15 15 C 1.50718 * 123.04478 * 179.66377 * 5 4 3 16 16 C 1.53555 * 107.73824 * 344.29658 * 15 5 4 17 17 N 1.46876 * 109.70182 * 49.47250 * 16 15 5 18 18 C 1.46906 * 111.00074 * 51.79528 * 17 16 15 19 19 C 1.47263 * 111.71921 * 287.31166 * 17 16 15 20 20 H 1.09001 * 109.47089 * 90.98188 * 1 2 3 21 21 H 1.09005 * 109.46881 * 210.97693 * 1 2 3 22 22 H 1.08997 * 109.47474 * 330.97626 * 1 2 3 23 23 H 0.97002 * 119.99869 * 174.70319 * 10 9 7 24 24 H 1.08998 * 109.75175 * 224.74581 * 15 5 4 25 25 H 1.09010 * 109.82003 * 103.87977 * 15 5 4 26 26 H 1.09005 * 109.42153 * 289.41667 * 16 15 5 27 27 H 1.09004 * 109.42764 * 169.53525 * 16 15 5 28 28 H 1.08998 * 109.46714 * 59.99543 * 18 17 16 29 29 H 1.08997 * 109.46787 * 179.97438 * 18 17 16 30 30 H 1.09001 * 109.46350 * 299.99723 * 18 17 16 31 31 H 1.09004 * 109.73120 * 171.78259 * 19 17 16 32 32 H 1.09003 * 109.73357 * 292.46603 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2927 1.1326 0.0000 4 6 3.5406 0.7497 0.0006 5 6 3.5847 -0.6448 -0.0017 6 6 2.2780 -1.1122 0.0005 7 6 1.8662 -2.4528 0.0018 8 1 2.4101 -3.1841 0.5811 9 6 0.7488 -2.8433 -0.7487 10 7 0.3125 -2.0807 -1.7172 11 14 -0.1174 -4.4534 -0.3655 12 1 -0.6160 -4.4266 1.0330 13 1 -1.2606 -4.6342 -1.2959 14 1 0.8364 -5.5798 -0.5294 15 6 4.8734 -1.4263 -0.0091 16 6 6.0016 -0.4644 -0.4092 17 7 5.9223 0.7568 0.4031 18 6 5.8601 0.4337 1.8348 19 6 4.7863 1.6043 0.0034 20 1 -0.3633 -0.0176 -1.0275 21 1 -0.3633 -0.8811 0.5290 22 1 -0.3634 0.8986 0.4986 23 1 -0.4117 -2.3856 -2.2859 24 1 4.8071 -2.2393 -0.7322 25 1 5.0668 -1.8297 0.9849 26 1 5.9007 -0.2059 -1.4633 27 1 6.9650 -0.9472 -0.2450 28 1 6.7545 -0.1195 2.1216 29 1 5.8025 1.3558 2.4131 30 1 4.9776 -0.1750 2.0318 31 1 4.6696 2.4225 0.7141 32 1 4.9598 2.0055 -0.9952 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261073226.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:29 Heat of formation + Delta-G solvation = 48.532018 kcal Electronic energy + Delta-G solvation = -15538.345154 eV Core-core repulsion = 13113.107640 eV Total energy + Delta-G solvation = -2425.237514 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.51819 -38.67241 -35.65016 -33.08573 -32.76516 -30.32866 -29.01862 -27.38421 -26.53013 -24.05791 -22.35085 -21.55586 -19.28585 -18.71666 -17.04631 -16.43304 -16.09597 -15.98523 -15.84782 -15.27673 -14.46753 -14.29085 -14.17805 -13.45903 -13.40285 -13.17646 -13.07220 -12.81570 -12.64857 -12.46657 -12.35863 -12.13633 -11.88729 -11.72290 -11.02221 -10.75004 -9.49445 -9.28130 -8.70510 -8.65257 -6.56085 1.24496 1.38085 1.48706 1.71472 2.16189 2.23726 2.32205 3.04429 3.18572 3.91293 4.26115 4.35099 4.40210 4.50351 4.58234 4.67019 4.77528 4.79623 4.88385 4.92730 5.03314 5.15644 5.21572 5.27538 5.39195 5.51909 5.62713 5.96749 6.11002 6.17929 6.37130 6.55457 6.77556 7.15741 7.56835 8.30332 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038744 B = 0.009896 C = 0.008575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.519169 B = 2828.884271 C = 3264.442074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.146 3.854 2 N -0.412 5.412 3 N -0.395 5.395 4 C 0.039 3.961 5 C -0.384 4.384 6 C 0.261 3.739 7 C -0.502 4.502 8 H 0.088 0.912 9 C 0.046 3.954 10 N -0.835 5.835 11 Si 0.982 3.018 12 H -0.261 1.261 13 H -0.268 1.268 14 H -0.260 1.260 15 C -0.036 4.036 16 C 0.065 3.935 17 N -0.523 5.523 18 C 0.023 3.977 19 C 0.145 3.855 20 H 0.059 0.941 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.290 0.710 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.014 0.986 31 H 0.091 0.909 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.396 -0.270 2.993 5.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.198 5.198 3 N -0.218 5.218 4 C -0.127 4.127 5 C -0.397 4.397 6 C 0.140 3.860 7 C -0.538 4.538 8 H 0.106 0.894 9 C -0.169 4.169 10 N -0.463 5.463 11 Si 0.802 3.198 12 H -0.185 1.185 13 H -0.192 1.192 14 H -0.184 1.184 15 C -0.076 4.076 16 C -0.063 4.063 17 N -0.244 5.244 18 C -0.125 4.125 19 C 0.015 3.985 20 H 0.077 0.923 21 H 0.081 0.919 22 H 0.085 0.915 23 H 0.101 0.899 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.090 0.910 30 H 0.032 0.968 31 H 0.109 0.891 32 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.729 1.124 2.782 4.786 hybrid contribution -1.216 -1.857 -0.037 2.220 sum 2.513 -0.733 2.744 3.793 Atomic orbital electron populations 1.21338 0.75856 1.00740 1.01686 1.49009 1.05429 1.03115 1.62199 1.76428 1.01775 1.10318 1.33276 1.23028 0.94252 0.95449 0.99957 1.20137 0.94399 0.93151 1.31983 1.18508 0.88673 0.88484 0.90363 1.18772 1.13078 0.91955 1.29979 0.89376 1.26634 0.95273 1.02313 0.92713 1.69828 1.24469 1.38917 1.13108 0.85249 0.78001 0.77222 0.79280 1.18506 1.19250 1.18437 1.20056 0.91506 0.96747 0.99270 1.22179 0.97772 0.89202 0.97179 1.62598 1.38725 1.18124 1.04942 1.22401 1.00852 1.01195 0.88048 1.20689 0.82177 0.93530 1.02142 0.92293 0.91884 0.91507 0.89904 0.93777 0.93542 0.91840 0.88268 0.89647 0.91045 0.96778 0.89120 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 6.87 9.59 127.77 1.23 8.10 16 2 N -0.41 -22.34 4.05 -361.40 -1.46 -23.80 16 3 N -0.39 -20.98 12.52 -47.45 -0.59 -21.57 16 4 C 0.04 1.87 6.67 43.18 0.29 2.15 16 5 C -0.38 -19.46 5.27 -19.42 -0.10 -19.56 16 6 C 0.26 14.47 6.15 38.83 0.24 14.71 16 7 C -0.50 -26.73 8.97 23.22 0.21 -26.52 16 8 H 0.09 4.57 7.92 -2.91 -0.02 4.55 16 9 C 0.05 2.26 4.22 85.32 0.36 2.62 16 10 N -0.83 -42.39 10.55 21.87 0.23 -42.16 16 11 Si 0.98 37.03 29.61 68.60 2.03 39.06 16 12 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 13 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 14 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 15 C -0.04 -1.51 5.56 30.04 0.17 -1.34 16 16 C 0.06 2.19 5.97 86.49 0.52 2.71 16 17 N -0.52 -17.41 5.18 -924.22 -4.78 -22.19 16 18 C 0.02 0.72 8.82 127.69 1.13 1.85 16 19 C 0.15 5.42 6.18 85.60 0.53 5.95 16 20 H 0.06 2.84 6.94 -2.39 -0.02 2.82 16 21 H 0.06 2.90 7.15 -2.38 -0.02 2.88 16 22 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 23 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 24 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.05 1.86 7.01 -2.38 -0.02 1.85 16 26 H 0.06 2.21 8.06 -2.38 -0.02 2.19 16 27 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.07 1.99 8.02 -2.39 -0.02 1.97 16 30 H 0.01 0.52 5.59 -2.39 -0.01 0.50 16 31 H 0.09 3.11 7.97 -2.38 -0.02 3.09 16 32 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -62.61 258.28 1.09 -61.53 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 1.11 Total: 18.48 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 4.56 Total: -9.33 kcal Atomic # 7 Polarization: -103.12 SS G_CDS: -6.61 Total: -109.73 kcal Atomic # 14 Polarization: 37.03 SS G_CDS: 2.03 Total: 39.06 kcal Total: -62.61 1.09 -61.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261073226.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.060 kcal (2) G-P(sol) polarization free energy of solvation -62.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds