Wall clock time and date at job start Mon Mar 30 2020 02:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47843 * 110.99888 * 2 1 4 4 C 1.54904 * 104.79405 * 213.63369 * 3 2 1 5 5 C 1.55139 * 101.65629 * 37.06983 * 4 3 2 6 6 H 1.09003 * 110.70684 * 82.72539 * 5 4 3 7 7 N 1.46496 * 110.70877 * 205.96217 * 5 4 3 8 8 C 1.35080 * 126.48445 * 54.73957 * 7 5 4 9 9 N 1.31007 * 109.64807 * 179.88196 * 8 7 5 10 10 C 1.33026 * 109.98125 * 0.39196 * 9 8 7 11 11 C 1.38427 * 126.48976 * 235.05274 * 7 5 4 12 12 C 1.40068 * 127.05542 * 359.92780 * 11 7 5 13 13 H 1.07997 * 120.00341 * 359.97438 * 12 11 7 14 14 C 1.40075 * 119.99838 * 180.02562 * 12 11 7 15 15 N 1.30852 * 119.99983 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99938 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47111 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47396 * 119.99868 * 16 14 12 19 19 H 1.48496 * 109.47121 * 239.99948 * 16 14 12 20 20 C 1.47446 * 111.00255 * 239.15549 * 2 1 3 21 21 H 1.08997 * 109.46899 * 180.84249 * 1 2 3 22 22 H 1.08992 * 109.47422 * 300.84624 * 1 2 3 23 23 H 1.08998 * 109.47047 * 60.84657 * 1 2 3 24 24 H 1.08998 * 110.37465 * 332.46027 * 3 2 1 25 25 H 1.09003 * 110.37404 * 94.80784 * 3 2 1 26 26 H 1.09005 * 110.99350 * 278.97811 * 4 3 2 27 27 H 1.09000 * 111.02232 * 155.17788 * 4 3 2 28 28 H 1.08003 * 125.17222 * 0.02562 * 8 7 5 29 29 H 1.07996 * 126.26823 * 179.76540 * 10 9 8 30 30 H 0.96997 * 119.99902 * 179.97438 * 15 14 12 31 31 H 1.08997 * 109.88511 * 242.66682 * 20 2 1 32 32 H 1.08994 * 109.88544 * 3.85008 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 -0.8295 5 6 2.9159 0.2821 -1.9314 6 1 2.3745 0.7746 -2.7392 7 7 4.1043 -0.4034 -2.4451 8 6 5.0197 -1.0788 -1.7167 9 7 5.9434 -1.5631 -2.5096 10 6 5.6835 -1.2252 -3.7697 11 6 4.5050 -0.4766 -3.7681 12 6 3.8600 0.0845 -4.8776 13 1 2.9467 0.6453 -4.7448 14 6 4.3990 -0.0828 -6.1597 15 7 5.5053 -0.7627 -6.3207 16 14 3.5392 0.6661 -7.6393 17 1 2.3175 1.3822 -7.1919 18 1 4.4544 1.6226 -8.3120 19 1 3.1623 -0.4104 -8.5901 20 6 1.9975 -0.7057 -1.1818 21 1 -0.3633 -1.0275 0.0151 22 1 -0.3634 0.5269 0.8822 23 1 -0.3633 0.5006 -0.8975 24 1 1.2889 2.0592 -0.4724 25 1 2.2147 1.7038 1.0182 26 1 4.1302 0.9281 -0.2242 27 1 3.5501 2.2718 -1.2640 28 1 4.9928 -1.2028 -0.6441 29 1 6.2757 -1.4829 -4.6353 30 1 5.8783 -0.8788 -7.2085 31 1 2.5697 -1.5785 -0.8673 32 1 1.1756 -1.0120 -1.8289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261134141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:44 Heat of formation + Delta-G solvation = 59.126946 kcal Electronic energy + Delta-G solvation = -15154.306069 eV Core-core repulsion = 12729.527986 eV Total energy + Delta-G solvation = -2424.778083 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.17342 -38.31310 -33.60501 -32.98088 -30.26886 -28.70581 -27.63514 -25.23072 -24.66924 -21.55278 -20.87006 -19.83414 -18.68302 -17.25304 -15.81005 -15.73592 -14.87529 -14.35300 -14.01291 -13.43268 -13.30294 -13.03500 -12.70127 -12.36398 -12.09578 -11.63581 -11.47357 -11.33368 -11.18575 -10.94802 -10.88690 -10.73535 -10.47476 -10.05598 -9.41298 -8.36562 -8.15976 -8.01639 -6.88853 -6.61023 -4.22509 2.94223 3.07721 3.11678 3.67815 3.87173 3.99882 4.30453 4.71235 4.89030 5.00835 5.20135 5.34892 5.42485 5.46435 5.48792 5.53678 5.73817 5.81423 5.96360 6.10614 6.22223 6.28091 6.35450 6.94275 6.99413 7.06666 7.13449 7.65816 7.86525 8.01989 8.52270 8.90697 9.07038 9.15266 10.03152 10.34752 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030253 B = 0.008988 C = 0.007501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.293865 B = 3114.640887 C = 3731.954488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.532 5.532 3 C 0.043 3.957 4 C -0.137 4.137 5 C 0.136 3.864 6 H 0.095 0.905 7 N -0.486 5.486 8 C 0.055 3.945 9 N -0.487 5.487 10 C -0.135 4.135 11 C 0.175 3.825 12 C -0.445 4.445 13 H 0.067 0.933 14 C 0.072 3.928 15 N -0.801 5.801 16 Si 0.922 3.078 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.274 1.274 20 C 0.033 3.967 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.027 0.973 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.164 0.836 29 H 0.184 0.816 30 H 0.277 0.723 31 H 0.088 0.912 32 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.871 4.494 6.305 11.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.257 5.257 3 C -0.085 4.085 4 C -0.176 4.176 5 C 0.029 3.971 6 H 0.113 0.887 7 N -0.179 5.179 8 C -0.218 4.218 9 N -0.205 5.205 10 C -0.284 4.284 11 C 0.064 3.936 12 C -0.480 4.480 13 H 0.086 0.914 14 C -0.144 4.144 15 N -0.429 5.429 16 Si 0.747 3.253 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.095 4.095 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.099 0.901 26 H 0.102 0.898 27 H 0.096 0.904 28 H 0.181 0.819 29 H 0.200 0.800 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.946 3.704 6.926 11.173 hybrid contribution -1.492 1.257 -1.631 2.543 sum -9.438 4.961 5.296 11.905 Atomic orbital electron populations 1.22543 0.87907 1.02025 1.00411 1.63608 1.07746 1.14355 1.39970 1.23022 0.95557 0.89461 1.00458 1.23083 0.97859 0.99806 0.96872 1.22049 0.86644 0.92407 0.95979 0.88670 1.44962 1.20237 1.45066 1.07660 1.23537 0.92817 1.08287 0.97142 1.69534 1.25107 1.21871 1.03964 1.23372 1.00864 1.10998 0.93142 1.19064 0.95279 0.98029 0.81237 1.18344 1.08733 1.31169 0.89767 0.91441 1.25626 0.94562 0.94240 0.99998 1.69629 1.17107 1.31981 1.24202 0.86040 0.79687 0.79183 0.80381 1.18968 1.19927 1.19930 1.23244 0.98220 0.97974 0.90111 0.91410 0.91521 0.95462 0.93494 0.90079 0.89810 0.90423 0.81893 0.79980 0.91134 0.89419 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.12 60.06 0.55 0.77 16 2 N -0.53 -7.50 5.44 -239.53 -1.30 -8.80 16 3 C 0.04 0.55 6.73 -2.30 -0.02 0.54 16 4 C -0.14 -2.14 6.65 -24.60 -0.16 -2.30 16 5 C 0.14 2.54 3.66 -66.11 -0.24 2.30 16 6 H 0.10 1.83 6.93 -51.93 -0.36 1.47 16 7 N -0.49 -11.47 2.78 -106.61 -0.30 -11.76 16 8 C 0.05 1.33 10.88 -89.92 -0.98 0.35 16 9 N -0.49 -13.46 11.18 -13.59 -0.15 -13.61 16 10 C -0.14 -3.94 10.88 -16.52 -0.18 -4.12 16 11 C 0.17 4.80 6.74 -83.68 -0.56 4.24 16 12 C -0.44 -11.84 9.08 -38.21 -0.35 -12.19 16 13 H 0.07 1.69 6.88 -52.49 -0.36 1.33 16 14 C 0.07 1.84 5.50 -17.28 -0.10 1.74 16 15 N -0.80 -21.27 10.35 55.56 0.57 -20.70 16 16 Si 0.92 18.96 29.56 -169.99 -5.03 13.94 16 17 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 20 C 0.03 0.55 6.58 -2.84 -0.02 0.53 16 21 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.03 0.30 8.10 -51.93 -0.42 -0.12 16 24 H 0.05 0.56 7.78 -51.93 -0.40 0.15 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.37 7.38 -51.93 -0.38 0.99 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.16 3.41 7.96 -52.48 -0.42 2.99 16 29 H 0.18 5.50 5.78 -52.49 -0.30 5.19 16 30 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 31 H 0.09 1.58 7.36 -51.93 -0.38 1.20 16 32 H 0.06 0.94 7.58 -51.93 -0.39 0.54 16 LS Contribution 263.07 15.07 3.96 3.96 Total: -1.00 -29.93 263.07 -8.55 -38.47 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -4.25 Total: 6.64 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -2.06 Total: -8.14 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -1.18 Total: -54.88 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.93 -8.55 -38.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.600 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds