Wall clock time and date at job start Mon Mar 30 2020 02:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47843 * 110.99888 * 2 1 4 4 C 1.54904 * 104.79405 * 213.63369 * 3 2 1 5 5 C 1.55139 * 101.65629 * 37.06983 * 4 3 2 6 6 H 1.09003 * 110.70684 * 82.72539 * 5 4 3 7 7 N 1.46496 * 110.70877 * 205.96217 * 5 4 3 8 8 C 1.35080 * 126.48445 * 54.73957 * 7 5 4 9 9 N 1.31007 * 109.64807 * 179.88196 * 8 7 5 10 10 C 1.33026 * 109.98125 * 0.39196 * 9 8 7 11 11 C 1.38427 * 126.48976 * 235.05274 * 7 5 4 12 12 C 1.40068 * 127.05542 * 359.92780 * 11 7 5 13 13 H 1.07997 * 120.00341 * 359.97438 * 12 11 7 14 14 C 1.40075 * 119.99838 * 180.02562 * 12 11 7 15 15 N 1.30852 * 119.99983 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99938 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47111 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47396 * 119.99868 * 16 14 12 19 19 H 1.48496 * 109.47121 * 239.99948 * 16 14 12 20 20 C 1.47446 * 111.00255 * 239.15549 * 2 1 3 21 21 H 1.08997 * 109.46899 * 180.84249 * 1 2 3 22 22 H 1.08992 * 109.47422 * 300.84624 * 1 2 3 23 23 H 1.08998 * 109.47047 * 60.84657 * 1 2 3 24 24 H 1.08998 * 110.37465 * 332.46027 * 3 2 1 25 25 H 1.09003 * 110.37404 * 94.80784 * 3 2 1 26 26 H 1.09005 * 110.99350 * 278.97811 * 4 3 2 27 27 H 1.09000 * 111.02232 * 155.17788 * 4 3 2 28 28 H 1.08003 * 125.17222 * 0.02562 * 8 7 5 29 29 H 1.07996 * 126.26823 * 179.76540 * 10 9 8 30 30 H 0.96997 * 119.99902 * 179.97438 * 15 14 12 31 31 H 1.08997 * 109.88511 * 242.66682 * 20 2 1 32 32 H 1.08994 * 109.88544 * 3.85008 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9988 1.3802 0.0000 4 6 3.3047 1.3027 -0.8295 5 6 2.9159 0.2821 -1.9314 6 1 2.3745 0.7746 -2.7392 7 7 4.1043 -0.4034 -2.4451 8 6 5.0197 -1.0788 -1.7167 9 7 5.9434 -1.5631 -2.5096 10 6 5.6835 -1.2252 -3.7697 11 6 4.5050 -0.4766 -3.7681 12 6 3.8600 0.0845 -4.8776 13 1 2.9467 0.6453 -4.7448 14 6 4.3990 -0.0828 -6.1597 15 7 5.5053 -0.7627 -6.3207 16 14 3.5392 0.6661 -7.6393 17 1 2.3175 1.3822 -7.1919 18 1 4.4544 1.6226 -8.3120 19 1 3.1623 -0.4104 -8.5901 20 6 1.9975 -0.7057 -1.1818 21 1 -0.3633 -1.0275 0.0151 22 1 -0.3634 0.5269 0.8822 23 1 -0.3633 0.5006 -0.8975 24 1 1.2889 2.0592 -0.4724 25 1 2.2147 1.7038 1.0182 26 1 4.1302 0.9281 -0.2242 27 1 3.5501 2.2718 -1.2640 28 1 4.9928 -1.2028 -0.6441 29 1 6.2757 -1.4829 -4.6353 30 1 5.8783 -0.8788 -7.2085 31 1 2.5697 -1.5785 -0.8673 32 1 1.1756 -1.0120 -1.8289 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261134141.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:44 Heat of formation + Delta-G solvation = 39.633847 kcal Electronic energy + Delta-G solvation = -15155.151354 eV Core-core repulsion = 12729.527986 eV Total energy + Delta-G solvation = -2425.623367 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.01966 -39.65204 -35.56528 -34.52641 -31.71906 -30.51281 -29.14249 -26.69750 -26.35952 -23.08405 -22.03766 -21.82497 -20.50285 -19.03123 -17.61215 -16.95723 -16.51823 -15.75201 -15.24935 -15.08868 -14.81176 -14.50941 -14.40772 -14.08318 -13.46355 -13.06060 -12.97930 -12.79150 -12.65624 -12.46942 -12.34455 -12.23550 -11.99657 -11.71202 -11.30292 -10.23756 -10.02361 -9.36889 -8.93867 -8.52976 -6.28668 1.27388 1.39368 1.55239 1.83740 2.17128 2.44136 2.76809 3.03157 3.34983 3.63431 3.67254 3.88949 4.13905 4.26045 4.38378 4.42045 4.50726 4.64869 4.78411 4.84205 4.97099 4.98812 5.05553 5.13211 5.14231 5.66753 5.78179 5.86045 6.00142 6.04493 6.51837 6.85777 6.97966 7.24472 7.97690 8.45157 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030253 B = 0.008988 C = 0.007501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.293865 B = 3114.640887 C = 3731.954488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.538 5.538 3 C 0.052 3.948 4 C -0.132 4.132 5 C 0.124 3.876 6 H 0.088 0.912 7 N -0.484 5.484 8 C 0.078 3.922 9 N -0.522 5.522 10 C -0.181 4.181 11 C 0.155 3.845 12 C -0.471 4.471 13 H 0.077 0.923 14 C 0.025 3.975 15 N -0.835 5.835 16 Si 1.002 2.998 17 H -0.255 1.255 18 H -0.267 1.267 19 H -0.267 1.267 20 C 0.045 3.955 21 H 0.070 0.930 22 H 0.088 0.912 23 H 0.030 0.970 24 H 0.063 0.937 25 H 0.103 0.897 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.198 0.802 29 H 0.161 0.839 30 H 0.285 0.715 31 H 0.069 0.931 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.061 5.944 7.051 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.262 5.262 3 C -0.076 4.076 4 C -0.170 4.170 5 C 0.018 3.982 6 H 0.106 0.894 7 N -0.176 5.176 8 C -0.197 4.197 9 N -0.241 5.241 10 C -0.327 4.327 11 C 0.043 3.957 12 C -0.506 4.506 13 H 0.095 0.905 14 C -0.188 4.188 15 N -0.463 5.463 16 Si 0.822 3.178 17 H -0.178 1.178 18 H -0.192 1.192 19 H -0.192 1.192 20 C -0.084 4.084 21 H 0.089 0.911 22 H 0.107 0.893 23 H 0.049 0.951 24 H 0.082 0.918 25 H 0.121 0.879 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.215 0.785 29 H 0.178 0.822 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.154 5.162 7.693 13.746 hybrid contribution -0.814 0.790 -1.750 2.085 sum -10.968 5.952 5.943 13.822 Atomic orbital electron populations 1.22643 0.85991 1.02784 1.01629 1.63641 1.09549 1.14921 1.38128 1.23061 0.94103 0.89137 1.01277 1.23053 0.99265 0.98796 0.95917 1.22414 0.85348 0.93617 0.96780 0.89376 1.45147 1.21317 1.44754 1.06379 1.24153 0.91515 1.05826 0.98230 1.69458 1.27024 1.23713 1.03886 1.23194 1.02452 1.13682 0.93359 1.19311 0.95204 0.98081 0.83120 1.18702 1.09435 1.32057 0.90414 0.90455 1.26735 0.95001 0.94128 1.02927 1.69747 1.18464 1.32651 1.25439 0.84861 0.78672 0.78370 0.75906 1.17843 1.19152 1.19189 1.23030 0.97614 0.97025 0.90773 0.91076 0.89293 0.95113 0.91840 0.87873 0.90541 0.90038 0.78498 0.82165 0.90400 0.91228 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.12 127.69 1.16 1.50 16 2 N -0.54 -13.50 5.44 -911.74 -4.96 -18.47 16 3 C 0.05 1.15 6.73 86.77 0.58 1.73 16 4 C -0.13 -3.82 6.65 31.98 0.21 -3.60 16 5 C 0.12 4.48 3.66 46.17 0.17 4.65 16 6 H 0.09 3.31 6.93 -2.39 -0.02 3.30 16 7 N -0.48 -22.90 2.78 -491.21 -1.36 -24.27 16 8 C 0.08 3.77 10.88 180.10 1.96 5.73 16 9 N -0.52 -29.65 11.18 -196.91 -2.20 -31.85 16 10 C -0.18 -10.96 10.88 84.85 0.92 -10.03 16 11 C 0.16 8.75 6.74 38.88 0.26 9.01 16 12 C -0.47 -25.44 9.08 23.16 0.21 -25.23 16 13 H 0.08 3.87 6.88 -2.91 -0.02 3.85 16 14 C 0.03 1.30 5.50 85.28 0.47 1.77 16 15 N -0.83 -45.65 10.35 21.86 0.23 -45.43 16 16 Si 1.00 38.48 29.56 68.60 2.03 40.51 16 17 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 18 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 19 H -0.27 -9.90 7.11 99.48 0.71 -9.20 16 20 C 0.04 1.40 6.58 86.64 0.57 1.97 16 21 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.03 0.58 8.10 -2.39 -0.02 0.56 16 24 H 0.06 1.24 7.78 -2.39 -0.02 1.22 16 25 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.08 2.34 7.38 -2.38 -0.02 2.32 16 27 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.20 7.94 7.96 -2.91 -0.02 7.92 16 29 H 0.16 10.29 5.78 -2.91 -0.02 10.27 16 30 H 0.29 14.04 8.30 -92.71 -0.77 13.28 16 31 H 0.07 2.44 7.36 -2.39 -0.02 2.42 16 32 H 0.06 1.85 7.58 -2.39 -0.02 1.84 16 Total: -1.00 -66.51 263.07 1.36 -65.16 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 1.11 Total: 26.85 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 6.52 Total: -12.51 kcal Atomic # 7 Polarization: -111.71 SS G_CDS: -8.30 Total: -120.01 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.51 kcal Total: -66.51 1.36 -65.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261134141.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.791 kcal (2) G-P(sol) polarization free energy of solvation -66.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds