Wall clock time and date at job start Mon Mar 30 2020 02:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46509 * 109.46808 * 2 1 4 4 N 1.29107 * 126.00803 * 270.04329 * 3 2 1 5 5 N 1.29020 * 110.25752 * 180.02562 * 4 3 2 6 6 C 1.32918 * 108.63534 * 0.02562 * 5 4 3 7 7 C 1.34401 * 126.00451 * 90.00305 * 3 2 1 8 8 C 1.50542 * 129.25446 * 359.79555 * 7 3 2 9 9 C 1.53434 * 108.32106 * 196.55267 * 8 7 3 10 10 C 1.53097 * 109.55652 * 310.28451 * 9 8 7 11 11 C 1.50595 * 129.15974 * 179.88880 * 6 5 4 12 12 H 1.09002 * 109.69117 * 76.79529 * 11 6 5 13 13 C 1.50697 * 109.69355 * 316.25393 * 11 6 5 14 14 H 1.08002 * 120.00295 * 240.54536 * 13 11 6 15 15 C 1.37884 * 119.99943 * 60.54061 * 13 11 6 16 16 N 1.31515 * 119.99917 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99865 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46925 * 60.00558 * 17 15 13 19 19 H 1.48495 * 109.47067 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47427 * 300.00479 * 17 15 13 21 21 H 1.08997 * 109.47264 * 59.99721 * 1 2 3 22 22 H 1.09002 * 109.46617 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47271 * 299.99764 * 1 2 3 24 24 H 1.09000 * 109.47096 * 240.01002 * 2 1 3 25 25 H 1.09002 * 109.47499 * 119.99840 * 2 1 3 26 26 H 1.08999 * 109.68986 * 316.26726 * 8 7 3 27 27 H 1.08997 * 109.68851 * 76.80861 * 8 7 3 28 28 H 1.08998 * 109.45824 * 70.31509 * 9 8 7 29 29 H 1.09000 * 109.45140 * 190.27363 * 9 8 7 30 30 H 1.09008 * 109.45225 * 310.02922 * 10 9 8 31 31 H 1.08996 * 109.45607 * 190.09961 * 10 9 8 32 32 H 0.96995 * 119.99789 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2705 2.0972 -1.0444 5 7 2.6851 3.2677 -0.6942 6 6 2.7092 3.3301 0.6333 7 6 2.2817 2.1262 1.0873 8 6 2.1501 1.7664 2.5431 9 6 2.1702 3.0626 3.3640 10 6 3.3620 3.9224 2.9351 11 6 3.1175 4.4735 1.5243 12 1 2.3221 5.2182 1.5540 13 6 4.3817 5.1018 0.9971 14 1 5.2723 5.1178 1.6080 15 6 4.4016 5.6561 -0.2652 16 7 3.3171 5.6370 -1.0089 17 14 5.9685 6.4355 -0.9184 18 1 7.0491 5.4175 -0.9566 19 1 5.7289 6.9553 -2.2886 20 1 6.3732 7.5538 -0.0290 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 1.2093 1.2415 2.7081 27 1 2.9832 1.1296 2.8407 28 1 1.2452 3.6138 3.1948 29 1 2.2599 2.8203 4.4229 30 1 4.2670 3.3147 2.9354 31 1 3.4816 4.7512 3.6328 32 1 3.3311 6.0273 -1.8968 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261170561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:54 Heat of formation + Delta-G solvation = 92.769008 kcal Electronic energy + Delta-G solvation = -15531.277375 eV Core-core repulsion = 13107.958121 eV Total energy + Delta-G solvation = -2423.319254 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.11364 -36.32325 -34.82011 -32.64099 -30.25535 -29.16872 -28.83916 -24.86685 -23.87697 -22.25388 -21.60857 -19.76827 -18.47929 -16.68611 -15.73911 -15.41057 -14.42388 -14.35044 -14.00548 -13.23821 -13.04321 -12.73970 -12.61327 -12.20496 -12.01624 -11.39997 -11.30604 -11.19650 -10.72915 -10.43840 -10.37936 -10.22083 -9.91343 -9.53468 -9.46401 -8.77123 -8.58388 -8.17803 -7.51194 -5.72910 -3.81819 2.66157 3.24019 3.46212 3.51161 3.52224 4.14804 4.63361 4.77916 5.04112 5.12566 5.25739 5.43756 5.52110 5.56900 5.59259 5.70288 5.88259 6.08727 6.12740 6.22913 6.27480 6.38877 6.62129 6.72250 6.91236 6.96783 7.40298 7.69588 7.70776 7.82180 8.14972 8.50158 9.14093 9.80829 10.00496 11.31270 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033525 B = 0.010696 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.990860 B = 2617.286017 C = 3227.927846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.118 3.882 3 N -0.304 5.304 4 N -0.149 5.149 5 N -0.179 5.179 6 C 0.052 3.948 7 C -0.080 4.080 8 C -0.028 4.028 9 C -0.114 4.114 10 C -0.108 4.108 11 C 0.121 3.879 12 H 0.041 0.959 13 C -0.541 4.541 14 H 0.055 0.945 15 C 0.075 3.925 16 N -0.832 5.832 17 Si 0.885 3.115 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.279 1.279 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.094 0.906 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.982 -10.496 6.514 13.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.005 4.005 3 N -0.098 5.098 4 N -0.126 5.126 5 N -0.042 5.042 6 C -0.089 4.089 7 C -0.212 4.212 8 C -0.068 4.068 9 C -0.152 4.152 10 C -0.146 4.146 11 C 0.101 3.899 12 H 0.058 0.942 13 C -0.579 4.579 14 H 0.074 0.926 15 C -0.132 4.132 16 N -0.466 5.466 17 Si 0.713 3.287 18 H -0.207 1.207 19 H -0.214 1.214 20 H -0.205 1.205 21 H 0.085 0.915 22 H 0.093 0.907 23 H 0.081 0.919 24 H 0.113 0.887 25 H 0.108 0.892 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.073 -10.419 4.711 12.509 hybrid contribution 0.794 0.033 0.513 0.946 sum -4.279 -10.386 5.224 12.388 Atomic orbital electron populations 1.22122 0.94188 1.02659 1.03484 1.21708 0.95468 0.79117 1.04213 1.46849 1.45427 1.12177 1.05337 1.78683 1.20479 1.01015 1.12403 1.75487 1.10990 1.05049 1.12722 1.22701 0.99238 0.95403 0.91509 1.21792 1.12987 0.95137 0.91276 1.19918 1.00624 0.98472 0.87761 1.21608 1.00567 0.95395 0.97663 1.21688 0.96196 0.98115 0.98613 1.17267 0.97309 0.88866 0.86451 0.94171 1.20759 0.96322 1.39639 1.01184 0.92648 1.24938 0.95676 0.95816 0.96815 1.69984 1.26782 1.40443 1.09344 0.86798 0.84424 0.79497 0.77971 1.20661 1.21413 1.20495 0.91493 0.90737 0.91935 0.88724 0.89241 0.92105 0.91443 0.91991 0.92286 0.92763 0.92326 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 10.24 37.16 0.38 -1.51 16 2 C 0.12 1.58 6.96 -4.04 -0.03 1.55 16 3 N -0.30 -6.10 3.33 -57.25 -0.19 -6.29 16 4 N -0.15 -3.67 13.19 60.35 0.80 -2.87 16 5 N -0.18 -5.05 9.58 33.16 0.32 -4.74 16 6 C 0.05 1.35 6.18 -83.12 -0.51 0.83 16 7 C -0.08 -1.68 6.76 -82.49 -0.56 -2.24 16 8 C -0.03 -0.45 5.95 -27.74 -0.16 -0.61 16 9 C -0.11 -1.85 5.90 -26.46 -0.16 -2.00 16 10 C -0.11 -2.17 5.16 -26.47 -0.14 -2.30 16 11 C 0.12 3.11 2.48 -92.76 -0.23 2.88 16 12 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 13 C -0.54 -15.37 8.55 -34.44 -0.29 -15.67 16 14 H 0.06 1.54 7.75 -52.49 -0.41 1.13 16 15 C 0.08 2.18 5.13 -17.82 -0.09 2.09 16 16 N -0.83 -25.23 10.63 55.43 0.59 -24.64 16 17 Si 0.88 22.42 29.54 -169.99 -5.02 17.40 16 18 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 22 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.09 0.97 7.96 -51.93 -0.41 0.55 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 1.10 8.08 -51.92 -0.42 0.68 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 264.40 15.07 3.98 3.98 Total: -1.00 -33.72 264.40 -5.92 -39.64 By element: Atomic # 1 Polarization: -0.89 SS G_CDS: -4.60 Total: -5.49 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -1.79 Total: -16.99 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 1.51 Total: -38.53 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.72 -5.92 -39.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.406 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds