Wall clock time and date at job start Mon Mar 30 2020 02:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46509 * 109.46808 * 2 1 4 4 N 1.29107 * 126.00803 * 270.04329 * 3 2 1 5 5 N 1.29020 * 110.25752 * 180.02562 * 4 3 2 6 6 C 1.32918 * 108.63534 * 0.02562 * 5 4 3 7 7 C 1.34401 * 126.00451 * 90.00305 * 3 2 1 8 8 C 1.50542 * 129.25446 * 359.79555 * 7 3 2 9 9 C 1.53434 * 108.32106 * 196.55267 * 8 7 3 10 10 C 1.53097 * 109.55652 * 310.28451 * 9 8 7 11 11 C 1.50595 * 129.15974 * 179.88880 * 6 5 4 12 12 H 1.09002 * 109.69117 * 76.79529 * 11 6 5 13 13 C 1.50697 * 109.69355 * 316.25393 * 11 6 5 14 14 H 1.08002 * 120.00295 * 240.54536 * 13 11 6 15 15 C 1.37884 * 119.99943 * 60.54061 * 13 11 6 16 16 N 1.31515 * 119.99917 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 119.99865 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46925 * 60.00558 * 17 15 13 19 19 H 1.48495 * 109.47067 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47427 * 300.00479 * 17 15 13 21 21 H 1.08997 * 109.47264 * 59.99721 * 1 2 3 22 22 H 1.09002 * 109.46617 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47271 * 299.99764 * 1 2 3 24 24 H 1.09000 * 109.47096 * 240.01002 * 2 1 3 25 25 H 1.09002 * 109.47499 * 119.99840 * 2 1 3 26 26 H 1.08999 * 109.68986 * 316.26726 * 8 7 3 27 27 H 1.08997 * 109.68851 * 76.80861 * 8 7 3 28 28 H 1.08998 * 109.45824 * 70.31509 * 9 8 7 29 29 H 1.09000 * 109.45140 * 190.27363 * 9 8 7 30 30 H 1.09008 * 109.45225 * 310.02922 * 10 9 8 31 31 H 1.08996 * 109.45607 * 190.09961 * 10 9 8 32 32 H 0.96995 * 119.99789 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2705 2.0972 -1.0444 5 7 2.6851 3.2677 -0.6942 6 6 2.7092 3.3301 0.6333 7 6 2.2817 2.1262 1.0873 8 6 2.1501 1.7664 2.5431 9 6 2.1702 3.0626 3.3640 10 6 3.3620 3.9224 2.9351 11 6 3.1175 4.4735 1.5243 12 1 2.3221 5.2182 1.5540 13 6 4.3817 5.1018 0.9971 14 1 5.2723 5.1178 1.6080 15 6 4.4016 5.6561 -0.2652 16 7 3.3171 5.6370 -1.0089 17 14 5.9685 6.4355 -0.9184 18 1 7.0491 5.4175 -0.9566 19 1 5.7289 6.9553 -2.2886 20 1 6.3732 7.5538 -0.0290 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8933 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 1.2093 1.2415 2.7081 27 1 2.9832 1.1296 2.8407 28 1 1.2452 3.6138 3.1948 29 1 2.2599 2.8203 4.4229 30 1 4.2670 3.3147 2.9354 31 1 3.4816 4.7512 3.6328 32 1 3.3311 6.0273 -1.8968 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261170561.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:54 Heat of formation + Delta-G solvation = 69.868716 kcal Electronic energy + Delta-G solvation = -15532.270406 eV Core-core repulsion = 13107.958121 eV Total energy + Delta-G solvation = -2424.312285 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.81401 -37.91915 -36.23178 -34.58424 -31.81102 -30.76669 -30.49036 -26.78858 -25.12986 -23.98771 -23.19712 -21.35201 -20.06602 -18.51496 -17.50197 -17.00016 -16.41308 -15.70335 -15.23475 -14.67707 -14.55184 -14.50348 -14.06377 -13.68179 -13.16410 -12.97953 -12.91528 -12.69521 -12.36274 -12.34925 -11.99933 -11.81209 -11.54353 -11.43777 -11.24717 -10.52460 -10.37473 -10.32863 -9.28384 -7.91691 -6.06056 1.02733 1.40300 1.43086 1.49693 1.88077 2.25374 2.52644 3.37990 3.66266 3.84143 4.04991 4.10539 4.26123 4.32554 4.48115 4.57027 4.69590 4.75654 4.83378 4.89275 4.95424 5.14802 5.18343 5.24907 5.34419 5.45814 5.67137 5.71224 5.91048 6.04973 6.21224 6.39660 6.98358 7.59293 8.22302 9.10643 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033525 B = 0.010696 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.990860 B = 2617.286017 C = 3227.927846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.101 3.899 3 N -0.289 5.289 4 N -0.182 5.182 5 N -0.241 5.241 6 C 0.002 3.998 7 C -0.054 4.054 8 C -0.027 4.027 9 C -0.108 4.108 10 C -0.101 4.101 11 C 0.114 3.886 12 H 0.001 0.999 13 C -0.557 4.557 14 H 0.054 0.946 15 C 0.023 3.977 16 N -0.860 5.860 17 Si 0.943 3.057 18 H -0.281 1.281 19 H -0.290 1.290 20 H -0.264 1.264 21 H 0.040 0.960 22 H 0.117 0.883 23 H 0.062 0.938 24 H 0.104 0.896 25 H 0.130 0.870 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.053 0.947 29 H 0.106 0.894 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.229 -13.092 8.817 16.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.019 4.019 3 N -0.083 5.083 4 N -0.159 5.159 5 N -0.102 5.102 6 C -0.141 4.141 7 C -0.189 4.189 8 C -0.066 4.066 9 C -0.146 4.146 10 C -0.140 4.140 11 C 0.093 3.907 12 H 0.019 0.981 13 C -0.595 4.595 14 H 0.072 0.928 15 C -0.181 4.181 16 N -0.495 5.495 17 Si 0.770 3.230 18 H -0.207 1.207 19 H -0.216 1.216 20 H -0.189 1.189 21 H 0.059 0.941 22 H 0.135 0.865 23 H 0.081 0.919 24 H 0.122 0.878 25 H 0.148 0.852 26 H 0.121 0.879 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.124 0.876 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -5.326 -13.039 7.004 15.730 hybrid contribution 0.815 0.738 -0.154 1.110 sum -4.512 -12.301 6.850 14.785 Atomic orbital electron populations 1.22104 0.92355 1.05020 1.02203 1.22386 0.96961 0.75769 1.06754 1.47360 1.43043 1.13817 1.04109 1.78512 1.22290 1.01015 1.14086 1.75371 1.13081 1.07069 1.14719 1.22774 1.02471 0.97574 0.91254 1.22442 1.09360 0.93344 0.93756 1.20224 1.03915 0.98970 0.83466 1.21591 0.97973 0.94688 1.00309 1.21580 0.98123 0.99030 0.95225 1.17239 0.94725 0.88719 0.89973 0.98101 1.21210 0.97513 1.39541 1.01262 0.92771 1.25699 0.98431 0.96598 0.97368 1.70182 1.28666 1.41546 1.09094 0.85868 0.80869 0.78917 0.77389 1.20708 1.21572 1.18914 0.94088 0.86484 0.91908 0.87775 0.85222 0.87916 0.88650 0.92798 0.87608 0.92976 0.91670 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 10.24 71.98 0.74 -2.31 16 2 C 0.10 2.34 6.96 86.38 0.60 2.95 16 3 N -0.29 -11.18 3.33 -335.04 -1.12 -12.29 16 4 N -0.18 -9.19 13.19 37.02 0.49 -8.70 16 5 N -0.24 -14.12 9.58 -48.99 -0.47 -14.58 16 6 C 0.00 0.08 6.18 41.75 0.26 0.34 16 7 C -0.05 -2.18 6.76 41.50 0.28 -1.90 16 8 C -0.03 -0.72 5.95 29.94 0.18 -0.54 16 9 C -0.11 -3.08 5.90 30.77 0.18 -2.90 16 10 C -0.10 -3.95 5.16 30.77 0.16 -3.79 16 11 C 0.11 6.00 2.48 -12.18 -0.03 5.97 16 12 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 13 C -0.56 -32.70 8.55 25.60 0.22 -32.48 16 14 H 0.05 3.07 7.75 -2.91 -0.02 3.05 16 15 C 0.02 1.40 5.13 84.66 0.43 1.84 16 16 N -0.86 -54.91 10.63 21.45 0.23 -54.68 16 17 Si 0.94 47.49 29.54 68.60 2.03 49.51 16 18 H -0.28 -14.04 7.11 99.48 0.71 -13.34 16 19 H -0.29 -14.51 7.11 99.48 0.71 -13.80 16 20 H -0.26 -12.53 7.11 99.48 0.71 -11.82 16 21 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.13 2.04 7.96 -2.39 -0.02 2.02 16 26 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.05 1.64 8.12 -2.39 -0.02 1.62 16 29 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.05 2.02 8.08 -2.38 -0.02 2.00 16 31 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 Total: -1.00 -79.90 264.40 5.27 -74.63 By element: Atomic # 1 Polarization: -2.14 SS G_CDS: 1.10 Total: -1.05 kcal Atomic # 6 Polarization: -35.86 SS G_CDS: 3.02 Total: -32.84 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -0.87 Total: -90.26 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 2.03 Total: 49.51 kcal Total: -79.90 5.27 -74.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170561.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.499 kcal (2) G-P(sol) polarization free energy of solvation -79.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds