Wall clock time and date at job start Mon Mar 30 2020 02:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.47120 * 2 1 4 4 N 1.29069 * 124.57654 * 269.70050 * 3 2 1 5 5 C 1.30236 * 108.41032 * 180.30523 * 4 3 2 6 6 C 1.40023 * 106.16496 * 359.90808 * 5 4 3 7 7 N 1.29074 * 124.57544 * 90.00245 * 3 2 1 8 8 C 1.50536 * 123.74518 * 180.30958 * 6 5 4 9 9 H 1.09005 * 109.72370 * 256.77220 * 8 6 5 10 10 C 1.50696 * 109.72969 * 136.09841 * 8 6 5 11 11 H 1.07993 * 119.99851 * 239.99793 * 10 8 6 12 12 C 1.37882 * 120.00014 * 59.99992 * 10 8 6 13 13 N 1.31510 * 119.99798 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99751 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.46878 * 90.00301 * 14 12 10 16 16 H 1.48503 * 109.46952 * 209.99606 * 14 12 10 17 17 H 1.48494 * 109.47408 * 330.00071 * 14 12 10 18 18 C 1.53466 * 108.14514 * 16.43772 * 8 6 5 19 19 C 1.53032 * 109.80238 * 309.68127 * 18 8 6 20 20 C 1.50531 * 130.08787 * 179.80890 * 5 4 3 21 21 H 1.09005 * 109.47052 * 300.00088 * 1 2 3 22 22 H 1.08994 * 109.47229 * 59.99566 * 1 2 3 23 23 H 1.09002 * 109.47446 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46612 * 240.00070 * 2 1 3 25 25 H 1.08998 * 109.47238 * 119.99948 * 2 1 3 26 26 H 0.97000 * 120.00040 * 179.97438 * 13 12 10 27 27 H 1.09001 * 109.41919 * 189.57909 * 18 8 6 28 28 H 1.09003 * 109.36619 * 69.74673 * 18 8 6 29 29 H 1.09005 * 109.41409 * 311.24867 * 19 18 8 30 30 H 1.09001 * 109.41745 * 191.44807 * 19 18 8 31 31 H 1.08997 * 109.72782 * 316.22089 * 20 5 4 32 32 H 1.09000 * 109.72451 * 76.84706 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2678 2.0700 -1.0627 5 6 2.6891 3.2477 -0.7001 6 6 2.6842 3.2494 0.7002 7 7 2.2626 2.0718 1.0628 8 6 3.0978 4.4308 1.5364 9 1 4.0967 4.2644 1.9397 10 6 2.1181 4.6231 2.6652 11 1 1.5677 5.5483 2.7508 12 6 1.9243 3.6177 3.5886 13 7 2.5949 2.4912 3.4846 14 14 0.7104 3.8563 4.9882 15 1 -0.6328 3.3860 4.5640 16 1 1.1577 3.0759 6.1698 17 1 0.6413 5.2965 5.3434 18 6 3.1026 5.6745 0.6373 19 6 3.9005 5.3898 -0.6371 20 6 3.1169 4.4241 -1.5363 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 2.4589 1.7840 4.1345 27 1 3.5596 6.5069 1.1725 28 1 2.0774 5.9332 0.3726 29 1 4.8584 4.9419 -0.3724 30 1 4.0737 6.3234 -1.1724 31 1 3.7533 4.0830 -2.3528 32 1 2.2383 4.9272 -1.9401 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261174079.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:20 Heat of formation + Delta-G solvation = 79.085186 kcal Electronic energy + Delta-G solvation = -15543.302822 eV Core-core repulsion = 13119.390193 eV Total energy + Delta-G solvation = -2423.912629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.04718 -38.09695 -35.12862 -34.76016 -33.02174 -30.81031 -30.37846 -27.01140 -25.50795 -23.30415 -23.04641 -21.32233 -20.27523 -18.32576 -17.73714 -16.94920 -16.43706 -15.84293 -15.43476 -15.05744 -14.54939 -14.37120 -13.80560 -13.62863 -13.06647 -12.93927 -12.84488 -12.70372 -12.51218 -12.33653 -12.13597 -11.80249 -11.53890 -11.28169 -11.24421 -10.61513 -10.42253 -10.35283 -9.33690 -7.95852 -6.09817 1.31701 1.40096 1.41066 1.50425 1.88232 2.07708 2.49156 3.32696 3.46208 3.99619 4.03782 4.16150 4.27440 4.31973 4.43909 4.62288 4.64871 4.81299 4.89861 4.95965 5.00978 5.09407 5.17955 5.26508 5.43981 5.48301 5.69061 5.89489 5.91177 5.97257 6.33020 6.41013 6.94367 7.55486 8.01356 9.06799 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020731 B = 0.014729 C = 0.009355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.291998 B = 1900.525175 C = 2992.413214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.135 3.865 3 N -0.210 5.210 4 N -0.320 5.320 5 C -0.036 4.036 6 C 0.021 3.979 7 N -0.240 5.240 8 C 0.117 3.883 9 H 0.008 0.992 10 C -0.551 4.551 11 H 0.054 0.946 12 C 0.026 3.974 13 N -0.863 5.863 14 Si 0.943 3.057 15 H -0.288 1.288 16 H -0.283 1.283 17 H -0.266 1.266 18 C -0.101 4.101 19 C -0.108 4.108 20 C -0.016 4.016 21 H 0.035 0.965 22 H 0.056 0.944 23 H 0.116 0.884 24 H 0.121 0.879 25 H 0.098 0.902 26 H 0.254 0.746 27 H 0.068 0.932 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 -1.128 -8.617 8.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.016 3.984 3 N -0.110 5.110 4 N -0.160 5.160 5 C -0.202 4.202 6 C -0.146 4.146 7 N -0.077 5.077 8 C 0.097 3.903 9 H 0.026 0.974 10 C -0.589 4.589 11 H 0.073 0.927 12 C -0.178 4.178 13 N -0.498 5.498 14 Si 0.769 3.231 15 H -0.214 1.214 16 H -0.209 1.209 17 H -0.190 1.190 18 C -0.139 4.139 19 C -0.146 4.146 20 C -0.055 4.055 21 H 0.054 0.946 22 H 0.075 0.925 23 H 0.135 0.865 24 H 0.139 0.861 25 H 0.117 0.883 26 H 0.063 0.937 27 H 0.087 0.913 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.285 -2.702 -8.521 9.031 hybrid contribution -0.450 0.458 1.206 1.366 sum -1.735 -2.244 -7.315 7.846 Atomic orbital electron populations 1.22074 0.93088 1.04682 1.01487 1.21968 0.96221 0.74639 1.05581 1.49234 1.48076 1.14262 0.99467 1.73257 1.19431 1.05956 1.17350 1.23584 1.06249 0.95422 0.94976 1.24017 1.02357 0.94984 0.93250 1.74587 1.14980 1.06329 1.11820 1.17254 0.94775 0.86951 0.91323 0.97412 1.21270 1.25423 1.01521 1.10678 0.92747 1.25631 0.97431 0.95050 0.99659 1.70157 1.40606 1.04752 1.34331 0.85811 0.79300 0.78344 0.79613 1.21431 1.20915 1.19010 1.21568 0.99730 0.96968 0.95601 1.21599 0.97917 0.99596 0.95454 1.19975 1.00466 0.89276 0.95813 0.94611 0.92501 0.86549 0.86105 0.88319 0.93724 0.91299 0.93138 0.92714 0.87892 0.88997 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.44 10.24 71.98 0.74 -3.70 16 2 C 0.13 4.43 7.26 86.38 0.63 5.06 16 3 N -0.21 -9.51 3.97 -187.75 -0.74 -10.26 16 4 N -0.32 -14.18 12.04 -47.76 -0.57 -14.75 16 5 C -0.04 -1.62 7.20 43.19 0.31 -1.31 16 6 C 0.02 1.11 6.25 43.19 0.27 1.38 16 7 N -0.24 -12.94 9.30 -47.75 -0.44 -13.39 16 8 C 0.12 6.10 2.49 -12.18 -0.03 6.07 16 9 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 10 C -0.55 -31.27 8.55 25.60 0.22 -31.05 16 11 H 0.05 3.02 7.75 -2.91 -0.02 3.00 16 12 C 0.03 1.48 5.15 84.66 0.44 1.92 16 13 N -0.86 -51.38 10.66 21.45 0.23 -51.16 16 14 Si 0.94 45.21 29.54 68.60 2.03 47.24 16 15 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 16 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 C -0.10 -4.00 5.13 30.76 0.16 -3.85 16 19 C -0.11 -3.39 5.87 30.76 0.18 -3.21 16 20 C -0.02 -0.53 6.31 29.95 0.19 -0.34 16 21 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 22 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 23 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.12 3.15 8.14 -2.39 -0.02 3.13 16 25 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 26 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 27 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.05 2.02 8.08 -2.39 -0.02 2.01 16 29 H 0.05 1.79 8.11 -2.38 -0.02 1.77 16 30 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.09 2.56 8.14 -2.39 -0.02 2.55 16 32 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -70.92 264.94 4.68 -66.24 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: 1.09 Total: 5.11 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 3.10 Total: -29.04 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -1.54 Total: -89.55 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -70.92 4.68 -66.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261174079.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.320 kcal (2) G-P(sol) polarization free energy of solvation -70.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds