Wall clock time and date at job start Mon Mar 30 2020 03:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.38533 * 119.99919 * 180.02562 * 2 1 3 5 5 C 1.39671 * 120.53464 * 4.99562 * 4 2 1 6 6 C 1.38078 * 118.33206 * 180.02562 * 5 4 2 7 7 C 1.50697 * 120.39732 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.47127 * 124.99987 * 7 6 5 9 9 C 1.50697 * 109.47127 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00171 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99948 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99814 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00244 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47147 * 59.99524 * 13 11 9 15 15 H 1.48501 * 109.46973 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46550 * 299.99986 * 13 11 9 17 17 N 1.32580 * 119.20379 * 0.02562 * 6 5 4 18 18 C 1.31761 * 121.01253 * 359.97438 * 17 6 5 19 19 N 1.31782 * 121.83230 * 359.72503 * 18 17 6 20 20 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 21 21 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 22 22 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 23 23 H 1.09001 * 109.47274 * 0.02562 * 3 2 1 24 24 H 1.09000 * 109.47166 * 120.00409 * 3 2 1 25 25 H 1.09004 * 109.47230 * 240.00361 * 3 2 1 26 26 H 1.07992 * 120.83123 * 359.97438 * 5 4 2 27 27 H 1.09002 * 109.47738 * 245.00351 * 7 6 5 28 28 H 1.09005 * 109.46971 * 5.00407 * 7 6 5 29 29 H 1.08998 * 109.47022 * 300.00243 * 8 7 6 30 30 H 1.09000 * 109.46542 * 60.00022 * 8 7 6 31 31 H 0.96997 * 119.99952 * 180.02562 * 12 11 9 32 32 H 1.08001 * 119.08289 * 180.02562 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1576 -1.1997 -0.0005 5 6 1.4745 -2.4134 -0.1058 6 6 2.2101 -3.5820 -0.1012 7 6 1.5208 -4.9174 -0.2129 8 6 2.1106 -5.6990 -1.3886 9 6 1.4218 -7.0347 -1.4999 10 1 0.6411 -7.2994 -0.8022 11 6 1.7882 -7.9187 -2.4925 12 7 2.7392 -7.5965 -3.3418 13 14 0.9338 -9.5741 -2.6310 14 1 -0.5189 -9.3641 -2.8559 15 1 1.5064 -10.3327 -3.7720 16 1 1.1345 -10.3412 -1.3753 17 7 3.5302 -3.5149 0.0027 18 6 4.1454 -2.3539 0.1005 19 7 3.4839 -1.2141 0.0944 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3633 0.8900 0.5139 22 1 -0.3633 -0.8900 0.5139 23 1 1.4892 2.0973 0.0005 24 1 2.8242 1.3264 0.8899 25 1 2.8241 1.3265 -0.8900 26 1 0.3980 -2.4374 -0.1880 27 1 1.6684 -5.4807 0.7085 28 1 0.4544 -4.7631 -0.3776 29 1 1.9630 -5.1357 -2.3100 30 1 3.1770 -5.8532 -1.2238 31 1 2.9968 -8.2182 -4.0403 32 1 5.2220 -2.3356 0.1833 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261232708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:17 Heat of formation + Delta-G solvation = 45.164753 kcal Electronic energy + Delta-G solvation = -14380.777874 eV Core-core repulsion = 11955.394344 eV Total energy + Delta-G solvation = -2425.383529 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.55917 -37.03440 -34.47395 -32.64318 -31.33685 -30.00266 -28.25722 -26.10524 -24.91245 -23.20153 -21.82619 -20.06176 -17.40101 -16.81538 -16.18670 -15.43573 -15.08476 -14.48653 -14.43784 -14.37098 -13.86060 -12.83290 -12.73976 -12.70436 -12.44398 -12.11847 -12.01222 -11.17933 -10.90840 -10.71066 -10.49074 -10.26341 -9.94439 -9.69401 -9.11409 -9.01085 -8.61055 -8.28074 -7.80969 -5.94181 -3.97362 1.50239 1.79642 2.85972 3.36795 3.41127 3.43338 4.33750 4.49884 4.56724 4.75680 4.83674 5.10390 5.19210 5.27493 5.41315 5.47397 5.54053 5.62857 5.73240 5.79614 6.02895 6.42763 6.53237 6.63819 6.84689 7.03680 7.34172 7.71895 7.74224 7.91893 8.08546 8.44594 8.74791 9.09629 9.65865 11.16991 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.050226 B = 0.005523 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.350108 B = 5068.347867 C = 5369.976699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.615 5.615 3 C 0.107 3.893 4 C 0.428 3.572 5 C -0.297 4.297 6 C 0.225 3.775 7 C -0.070 4.070 8 C 0.034 3.966 9 C -0.523 4.523 10 H 0.055 0.945 11 C 0.058 3.942 12 N -0.893 5.893 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 N -0.546 5.546 18 C 0.331 3.669 19 N -0.592 5.592 20 H 0.054 0.946 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.137 0.863 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.012 0.988 30 H 0.033 0.967 31 H 0.261 0.739 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.484 15.734 7.000 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.330 5.330 3 C -0.036 4.036 4 C 0.187 3.813 5 C -0.324 4.324 6 C 0.083 3.917 7 C -0.108 4.108 8 C -0.004 4.004 9 C -0.561 4.561 10 H 0.074 0.926 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 N -0.265 5.265 18 C 0.042 3.958 19 N -0.317 5.317 20 H 0.072 0.928 21 H 0.089 0.911 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.155 0.845 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.030 0.970 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.541 15.841 6.909 17.467 hybrid contribution -1.283 -0.794 -0.303 1.539 sum -3.824 15.046 6.606 16.872 Atomic orbital electron populations 1.21737 0.78277 1.03007 1.01780 1.46102 1.05218 1.03056 1.78637 1.21490 0.96346 0.83641 1.02134 1.18473 0.88737 0.85851 0.88250 1.22064 1.02061 0.92329 1.15934 1.21984 0.89109 0.96130 0.84452 1.20871 0.97925 0.89306 1.02697 1.19007 0.97286 0.93461 0.90645 1.21198 1.19969 1.00924 1.14059 0.92638 1.25010 0.95148 0.98403 0.95765 1.69974 1.29534 1.36275 1.17437 0.86656 0.79725 0.84021 0.77561 1.20303 1.21322 1.20201 1.68327 1.10712 1.29064 1.18393 1.24644 1.00351 0.82007 0.88844 1.67887 1.06874 1.32699 1.24256 0.92769 0.91087 0.90886 0.91396 0.92431 0.92565 0.84523 0.90537 0.91440 0.96966 0.94901 0.92962 0.79359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.87 10.06 59.85 0.60 1.47 16 2 N -0.61 -7.73 3.38 -189.47 -0.64 -8.37 16 3 C 0.11 1.08 10.22 59.85 0.61 1.69 16 4 C 0.43 6.93 7.39 -154.78 -1.14 5.79 16 5 C -0.30 -5.06 8.87 -39.11 -0.35 -5.40 16 6 C 0.22 4.48 6.20 -82.33 -0.51 3.97 16 7 C -0.07 -1.50 5.58 -27.88 -0.16 -1.65 16 8 C 0.03 0.90 4.84 -27.88 -0.14 0.76 16 9 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 10 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -27.47 13.29 55.43 0.74 -26.73 16 13 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 N -0.55 -11.11 10.03 -10.88 -0.11 -11.22 16 18 C 0.33 5.71 12.28 -92.19 -1.13 4.58 16 19 N -0.59 -9.99 9.71 -13.81 -0.13 -10.13 16 20 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 21 H 0.07 0.46 7.92 -51.93 -0.41 0.05 16 22 H 0.07 0.66 6.45 -51.93 -0.33 0.33 16 23 H 0.07 0.48 7.79 -51.93 -0.40 0.07 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.14 1.99 6.35 -52.49 -0.33 1.66 16 27 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 28 H 0.07 1.32 7.93 -51.93 -0.41 0.91 16 29 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.03 0.96 7.98 -51.93 -0.41 0.54 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.19 2.56 8.06 -52.49 -0.42 2.14 16 LS Contribution 276.51 15.07 4.17 4.17 Total: -1.00 -33.43 276.51 -8.01 -41.44 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -4.39 Total: -3.46 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.62 Total: -2.49 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: -0.15 Total: -56.45 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -33.43 -8.01 -41.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.609 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds