Wall clock time and date at job start Mon Mar 30 2020 03:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99607 * 2 1 4 4 C 1.38535 * 110.99953 * 123.95135 * 2 1 3 5 5 N 1.32992 * 120.53387 * 297.78593 * 4 2 1 6 6 C 1.31759 * 120.68595 * 180.30600 * 5 4 2 7 7 N 1.31784 * 121.83089 * 359.66676 * 6 5 4 8 8 C 1.32553 * 121.01179 * 0.02562 * 7 6 5 9 9 C 1.38118 * 119.20145 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.83374 * 179.97438 * 9 8 7 11 11 C 1.52994 * 109.46816 * 264.96897 * 10 9 8 12 12 C 1.50707 * 109.46485 * 183.78293 * 11 10 9 13 13 H 1.07988 * 120.00351 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99764 * 180.02562 * 12 11 10 15 15 N 1.31524 * 120.00067 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00205 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47466 * 90.00140 * 16 14 12 18 18 H 1.48507 * 109.47309 * 209.99868 * 16 14 12 19 19 H 1.48502 * 109.46875 * 329.99913 * 16 14 12 20 20 H 1.08995 * 109.47324 * 296.04764 * 1 2 3 21 21 H 1.09006 * 109.47196 * 56.05014 * 1 2 3 22 22 H 1.09005 * 109.46611 * 176.04320 * 1 2 3 23 23 H 1.09000 * 109.47010 * 179.11542 * 3 2 1 24 24 H 1.09003 * 109.47125 * 299.11363 * 3 2 1 25 25 H 1.09004 * 109.47341 * 59.11402 * 3 2 1 26 26 H 1.07999 * 119.08271 * 179.68598 * 6 5 4 27 27 H 1.08001 * 120.39753 * 179.97438 * 8 7 6 28 28 H 1.08996 * 109.47058 * 24.97534 * 10 9 8 29 29 H 1.08996 * 109.46894 * 144.97157 * 10 9 8 30 30 H 1.08999 * 109.47886 * 303.78210 * 11 10 9 31 31 H 1.08996 * 109.47463 * 63.78942 * 11 10 9 32 32 H 0.97000 * 119.99980 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9655 -0.7223 1.0728 5 7 1.7091 -0.3408 2.3208 6 6 2.1848 -1.0222 3.3434 7 7 2.9211 -2.1023 3.1767 8 6 3.2146 -2.5483 1.9635 9 6 2.7385 -1.8657 0.8612 10 6 3.0502 -2.3399 -0.5349 11 6 4.2757 -1.5932 -1.0653 12 6 4.5317 -1.9993 -2.4939 13 1 3.8848 -2.7175 -2.9753 14 6 5.5919 -1.4536 -3.1862 15 7 6.3801 -0.5792 -2.5997 16 14 5.9089 -1.9563 -4.9571 17 1 5.1680 -1.0487 -5.8695 18 1 7.3633 -1.8674 -5.2442 19 1 5.4476 -3.3524 -5.1655 20 1 -0.3634 0.4512 0.9232 21 1 -0.3634 0.5739 -0.8525 22 1 -0.3633 -1.0253 -0.0709 23 1 3.0849 1.3425 0.0159 24 1 1.6588 1.8898 -0.8978 25 1 1.6331 1.8997 0.8819 26 1 1.9647 -0.6862 4.3459 27 1 3.8193 -3.4344 1.8384 28 1 3.2560 -3.4101 -0.5176 29 1 2.1966 -2.1445 -1.1839 30 1 4.0949 -0.5193 -1.0197 31 1 5.1445 -1.8416 -0.4558 32 1 7.1258 -0.1950 -3.0869 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261232860.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:20 Heat of formation + Delta-G solvation = 48.401469 kcal Electronic energy + Delta-G solvation = -14940.030949 eV Core-core repulsion = 12514.787774 eV Total energy + Delta-G solvation = -2425.243175 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.89395 -37.17386 -34.52526 -32.69205 -32.11595 -29.26424 -27.43502 -25.59011 -25.30274 -22.89013 -21.82886 -20.41203 -17.50874 -17.25703 -16.35435 -15.23577 -14.66458 -14.46374 -14.12408 -13.84461 -13.75242 -13.13769 -12.73502 -12.32289 -12.13272 -11.89398 -11.54312 -11.34499 -10.94002 -10.87039 -10.47313 -10.25735 -9.92208 -9.76679 -9.13263 -8.99639 -8.55645 -8.42602 -8.32772 -5.98485 -4.00448 1.24824 1.34422 3.33094 3.39438 3.42459 3.79579 4.03928 4.43552 4.47860 4.54966 5.17292 5.33465 5.37584 5.40478 5.51606 5.68722 5.73916 5.80898 5.91933 5.93586 6.18662 6.49331 6.64587 6.69452 6.96346 7.06683 7.22602 7.43246 7.68752 7.84106 8.01391 8.35031 8.42152 9.05741 9.63016 11.12711 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033318 B = 0.007778 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.181613 B = 3598.956156 C = 3999.449416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.482 5.482 3 C 0.034 3.966 4 C 0.333 3.667 5 N -0.551 5.551 6 C 0.277 3.723 7 N -0.524 5.524 8 C 0.137 3.863 9 C -0.127 4.127 10 C -0.063 4.063 11 C 0.036 3.964 12 C -0.515 4.515 13 H 0.056 0.944 14 C 0.057 3.943 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 H 0.038 0.962 21 H 0.076 0.924 22 H 0.065 0.935 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.035 0.965 26 H 0.187 0.813 27 H 0.168 0.832 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.022 0.978 31 H 0.011 0.989 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.616 0.453 7.117 11.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.204 5.204 3 C -0.113 4.113 4 C 0.096 3.904 5 N -0.269 5.269 6 C -0.012 4.012 7 N -0.238 5.238 8 C -0.027 4.027 9 C -0.132 4.132 10 C -0.102 4.102 11 C -0.001 4.001 12 C -0.554 4.554 13 H 0.074 0.926 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 H 0.056 0.944 21 H 0.095 0.905 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.096 0.904 25 H 0.054 0.946 26 H 0.204 0.796 27 H 0.185 0.815 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.040 0.960 31 H 0.029 0.971 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.516 0.654 7.567 12.175 hybrid contribution 0.236 0.011 -1.061 1.087 sum -9.280 0.665 6.506 11.353 Atomic orbital electron populations 1.22382 0.85538 1.02431 1.01291 1.59958 1.08746 1.15414 1.36279 1.22377 1.01497 0.86337 1.01058 1.20014 0.91821 0.91567 0.87046 1.68391 1.24168 1.33620 1.00673 1.24492 0.91018 0.88007 0.97731 1.68327 1.14402 1.14705 1.26369 1.23132 0.94494 0.98483 0.86611 1.21973 0.95984 0.94981 1.00291 1.20651 1.01936 0.99344 0.88229 1.19020 0.90053 0.95726 0.95319 1.21201 1.12066 1.24704 0.97392 0.92579 1.25002 0.96117 0.95162 0.98101 1.69971 1.17242 1.29439 1.36854 0.86609 0.77257 0.78962 0.85244 1.20701 1.21332 1.19882 0.94377 0.90499 0.91601 0.90700 0.90440 0.94587 0.79622 0.81459 0.92308 0.90578 0.95959 0.97090 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.46 60.07 0.57 0.99 16 2 N -0.48 -8.16 4.18 -188.78 -0.79 -8.95 16 3 C 0.03 0.54 9.42 60.06 0.57 1.11 16 4 C 0.33 5.95 5.32 -154.78 -0.82 5.12 16 5 N -0.55 -9.24 9.79 -13.81 -0.14 -9.38 16 6 C 0.28 4.25 12.28 -92.19 -1.13 3.11 16 7 N -0.52 -8.61 10.43 -14.66 -0.15 -8.76 16 8 C 0.14 2.31 10.97 -17.28 -0.19 2.12 16 9 C -0.13 -2.34 5.19 -104.15 -0.54 -2.88 16 10 C -0.06 -1.28 5.05 -27.89 -0.14 -1.42 16 11 C 0.04 0.91 4.96 -27.88 -0.14 0.77 16 12 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 13 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 16 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H 0.04 0.50 7.91 -51.93 -0.41 0.09 16 21 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.07 1.36 7.95 -51.93 -0.41 0.94 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.04 0.53 8.02 -51.93 -0.42 0.11 16 26 H 0.19 2.14 8.06 -52.49 -0.42 1.71 16 27 H 0.17 2.43 8.06 -52.49 -0.42 2.01 16 28 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 29 H 0.08 1.56 7.73 -51.93 -0.40 1.15 16 30 H 0.02 0.60 7.98 -51.93 -0.41 0.19 16 31 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 278.16 15.07 4.19 4.19 Total: -1.00 -30.90 278.16 -7.97 -38.87 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -4.55 Total: -2.33 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -2.24 Total: -4.13 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.34 Total: -53.01 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.90 -7.97 -38.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232860.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.267 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds