Wall clock time and date at job start Mon Mar 30 2020 03:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46897 * 110.99607 * 2 1 4 4 C 1.38535 * 110.99953 * 123.95135 * 2 1 3 5 5 N 1.32992 * 120.53387 * 297.78593 * 4 2 1 6 6 C 1.31759 * 120.68595 * 180.30600 * 5 4 2 7 7 N 1.31784 * 121.83089 * 359.66676 * 6 5 4 8 8 C 1.32553 * 121.01179 * 0.02562 * 7 6 5 9 9 C 1.38118 * 119.20145 * 0.02562 * 8 7 6 10 10 C 1.50699 * 120.83374 * 179.97438 * 9 8 7 11 11 C 1.52994 * 109.46816 * 264.96897 * 10 9 8 12 12 C 1.50707 * 109.46485 * 183.78293 * 11 10 9 13 13 H 1.07988 * 120.00351 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99764 * 180.02562 * 12 11 10 15 15 N 1.31524 * 120.00067 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00205 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47466 * 90.00140 * 16 14 12 18 18 H 1.48507 * 109.47309 * 209.99868 * 16 14 12 19 19 H 1.48502 * 109.46875 * 329.99913 * 16 14 12 20 20 H 1.08995 * 109.47324 * 296.04764 * 1 2 3 21 21 H 1.09006 * 109.47196 * 56.05014 * 1 2 3 22 22 H 1.09005 * 109.46611 * 176.04320 * 1 2 3 23 23 H 1.09000 * 109.47010 * 179.11542 * 3 2 1 24 24 H 1.09003 * 109.47125 * 299.11363 * 3 2 1 25 25 H 1.09004 * 109.47341 * 59.11402 * 3 2 1 26 26 H 1.07999 * 119.08271 * 179.68598 * 6 5 4 27 27 H 1.08001 * 120.39753 * 179.97438 * 8 7 6 28 28 H 1.08996 * 109.47058 * 24.97534 * 10 9 8 29 29 H 1.08996 * 109.46894 * 144.97157 * 10 9 8 30 30 H 1.08999 * 109.47886 * 303.78210 * 11 10 9 31 31 H 1.08996 * 109.47463 * 63.78942 * 11 10 9 32 32 H 0.97000 * 119.99980 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9655 -0.7223 1.0728 5 7 1.7091 -0.3408 2.3208 6 6 2.1848 -1.0222 3.3434 7 7 2.9211 -2.1023 3.1767 8 6 3.2146 -2.5483 1.9635 9 6 2.7385 -1.8657 0.8612 10 6 3.0502 -2.3399 -0.5349 11 6 4.2757 -1.5932 -1.0653 12 6 4.5317 -1.9993 -2.4939 13 1 3.8848 -2.7175 -2.9753 14 6 5.5919 -1.4536 -3.1862 15 7 6.3801 -0.5792 -2.5997 16 14 5.9089 -1.9563 -4.9571 17 1 5.1680 -1.0487 -5.8695 18 1 7.3633 -1.8674 -5.2442 19 1 5.4476 -3.3524 -5.1655 20 1 -0.3634 0.4512 0.9232 21 1 -0.3634 0.5739 -0.8525 22 1 -0.3633 -1.0253 -0.0709 23 1 3.0849 1.3425 0.0159 24 1 1.6588 1.8898 -0.8978 25 1 1.6331 1.8997 0.8819 26 1 1.9647 -0.6862 4.3459 27 1 3.8193 -3.4344 1.8384 28 1 3.2560 -3.4101 -0.5176 29 1 2.1966 -2.1445 -1.1839 30 1 4.0949 -0.5193 -1.0197 31 1 5.1445 -1.8416 -0.4558 32 1 7.1258 -0.1950 -3.0869 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261232860.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:20 Heat of formation + Delta-G solvation = 29.929781 kcal Electronic energy + Delta-G solvation = -14940.831942 eV Core-core repulsion = 12514.787774 eV Total energy + Delta-G solvation = -2426.044167 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.19731 -38.43182 -36.26867 -34.41465 -33.61869 -30.99509 -28.61251 -27.33317 -26.61513 -24.57214 -23.12193 -22.14908 -18.82574 -18.55442 -18.43174 -16.61600 -16.37007 -15.90218 -15.40715 -15.30545 -15.08465 -14.57500 -14.36464 -14.25707 -13.31755 -13.26179 -13.05595 -12.82242 -12.75343 -12.63650 -12.09942 -11.78288 -11.65530 -11.50244 -11.14938 -10.50943 -10.32453 -10.05910 -9.67478 -8.14403 -6.24349 -0.08243 0.02972 1.43946 1.44667 1.55608 2.45111 2.54925 2.75207 3.19473 3.27724 3.28691 3.87011 4.02864 4.10917 4.33920 4.41278 4.55342 4.56541 4.68564 4.87670 4.89176 4.92690 4.96809 5.18986 5.36926 5.57373 5.77002 5.81149 5.87778 5.94554 6.14864 6.29641 6.91859 7.06342 7.44166 8.97160 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.033318 B = 0.007778 C = 0.006999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.181613 B = 3598.956156 C = 3999.449416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.503 5.503 3 C 0.041 3.959 4 C 0.330 3.670 5 N -0.559 5.559 6 C 0.283 3.717 7 N -0.532 5.532 8 C 0.142 3.858 9 C -0.156 4.156 10 C -0.044 4.044 11 C 0.046 3.954 12 C -0.533 4.533 13 H 0.063 0.937 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.962 3.038 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.261 1.261 20 H 0.042 0.958 21 H 0.096 0.904 22 H 0.067 0.933 23 H 0.042 0.958 24 H 0.094 0.906 25 H 0.046 0.954 26 H 0.226 0.774 27 H 0.186 0.814 28 H 0.071 0.929 29 H 0.072 0.928 30 H -0.006 1.006 31 H -0.017 1.017 32 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.681 -0.050 7.093 12.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.226 5.226 3 C -0.106 4.106 4 C 0.093 3.907 5 N -0.276 5.276 6 C -0.006 4.006 7 N -0.246 5.246 8 C -0.022 4.022 9 C -0.161 4.161 10 C -0.082 4.082 11 C 0.009 3.991 12 C -0.571 4.571 13 H 0.081 0.919 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.787 3.213 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.186 1.186 20 H 0.060 0.940 21 H 0.114 0.886 22 H 0.086 0.914 23 H 0.061 0.939 24 H 0.112 0.888 25 H 0.065 0.935 26 H 0.242 0.758 27 H 0.203 0.797 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.012 0.988 31 H 0.001 0.999 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -10.604 0.143 7.548 13.017 hybrid contribution 0.544 0.202 -0.960 1.122 sum -10.060 0.346 6.588 12.030 Atomic orbital electron populations 1.22436 0.83445 1.02996 1.02357 1.59977 1.10670 1.15635 1.36352 1.22297 0.99432 0.86418 1.02415 1.20187 0.91361 0.91304 0.87810 1.68494 1.24727 1.33914 1.00479 1.25336 0.89273 0.87019 0.98976 1.68444 1.15001 1.15327 1.25824 1.23437 0.93701 0.98670 0.86407 1.21853 0.98171 0.96462 0.99644 1.20290 0.99281 0.99301 0.89371 1.18811 0.91320 0.94595 0.94388 1.21648 1.12160 1.24652 0.98594 0.91870 1.25921 0.95918 0.95077 1.02758 1.70113 1.17881 1.30727 1.38774 0.85499 0.77077 0.79166 0.79606 1.19965 1.21145 1.18552 0.93959 0.88581 0.91432 0.93940 0.88772 0.93496 0.75809 0.79670 0.91031 0.90919 0.98752 0.99896 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 9.46 127.69 1.21 2.08 16 2 N -0.50 -16.80 4.18 -751.19 -3.14 -19.94 16 3 C 0.04 1.30 9.42 127.69 1.20 2.51 16 4 C 0.33 11.63 5.32 133.17 0.71 12.34 16 5 N -0.56 -17.91 9.79 -197.61 -1.94 -19.85 16 6 C 0.28 8.05 12.28 180.90 2.22 10.27 16 7 N -0.53 -16.54 10.43 -200.31 -2.09 -18.63 16 8 C 0.14 4.65 10.97 84.56 0.93 5.57 16 9 C -0.16 -5.70 5.19 -19.56 -0.10 -5.80 16 10 C -0.04 -1.78 5.05 29.85 0.15 -1.63 16 11 C 0.05 2.39 4.96 29.85 0.15 2.54 16 12 C -0.53 -29.71 9.11 25.60 0.23 -29.47 16 13 H 0.06 3.35 7.74 -2.92 -0.02 3.33 16 14 C 0.00 0.04 5.46 84.65 0.46 0.50 16 15 N -0.93 -56.70 13.29 21.45 0.28 -56.41 16 16 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 19 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 20 H 0.04 1.04 7.91 -2.39 -0.02 1.02 16 21 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 22 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 23 H 0.04 1.59 7.95 -2.39 -0.02 1.57 16 24 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 25 H 0.05 1.35 8.02 -2.39 -0.02 1.33 16 26 H 0.23 4.40 8.06 -2.91 -0.02 4.37 16 27 H 0.19 5.17 8.06 -2.91 -0.02 5.14 16 28 H 0.07 2.67 8.07 -2.39 -0.02 2.65 16 29 H 0.07 2.96 7.73 -2.39 -0.02 2.94 16 30 H -0.01 -0.34 7.98 -2.39 -0.02 -0.36 16 31 H -0.02 -0.99 8.14 -2.39 -0.02 -1.00 16 32 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -66.15 278.16 3.40 -62.75 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.09 Total: 7.28 kcal Atomic # 6 Polarization: -8.26 SS G_CDS: 7.16 Total: -1.10 kcal Atomic # 7 Polarization: -107.95 SS G_CDS: -6.88 Total: -114.83 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -66.15 3.40 -62.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261232860.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.680 kcal (2) G-P(sol) polarization free energy of solvation -66.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds