Wall clock time and date at job start Mon Mar 30 2020 02:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47262 * 2 1 4 4 C 1.46905 * 110.99626 * 69.60888 * 3 2 1 5 5 C 1.52998 * 109.46838 * 61.08865 * 4 3 2 6 6 C 1.37779 * 111.00190 * 193.56554 * 3 2 1 7 7 N 1.32799 * 120.70955 * 343.17424 * 6 3 2 8 8 C 1.31808 * 120.95668 * 180.31518 * 7 6 3 9 9 N 1.32076 * 122.49385 * 359.65380 * 8 7 6 10 10 C 1.32029 * 121.30563 * 0.02562 * 9 8 7 11 11 C 1.40884 * 118.85309 * 359.97438 * 10 9 8 12 12 C 1.41071 * 121.09710 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00292 * 156.89042 * 12 11 10 14 14 C 1.39957 * 120.00130 * 336.88905 * 12 11 10 15 15 N 1.30863 * 119.99991 * 329.37512 * 14 12 11 16 16 Si 1.86803 * 120.00097 * 149.36520 * 14 12 11 17 17 H 1.48496 * 109.47421 * 270.00577 * 16 14 12 18 18 H 1.48507 * 109.46785 * 30.00614 * 16 14 12 19 19 H 1.48501 * 109.46765 * 150.00085 * 16 14 12 20 20 H 1.09002 * 109.46935 * 177.00079 * 1 2 3 21 21 H 1.08994 * 109.47417 * 297.00133 * 1 2 3 22 22 H 1.09003 * 109.46925 * 57.00659 * 1 2 3 23 23 H 1.09000 * 109.46904 * 240.00357 * 2 1 3 24 24 H 1.08993 * 109.46807 * 120.00385 * 2 1 3 25 25 H 1.09003 * 109.46866 * 181.08441 * 4 3 2 26 26 H 1.08994 * 109.47748 * 301.08327 * 4 3 2 27 27 H 1.09004 * 109.47196 * 294.94961 * 5 4 3 28 28 H 1.08999 * 109.47486 * 54.94853 * 5 4 3 29 29 H 1.08996 * 109.47184 * 174.95509 * 5 4 3 30 30 H 1.07997 * 118.75443 * 179.68221 * 8 7 6 31 31 H 1.08001 * 120.56998 * 179.97438 * 10 9 8 32 32 H 0.97005 * 119.99867 * 353.90554 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7446 2.0405 1.2856 5 6 2.4659 1.2887 2.4060 6 6 3.3632 1.4337 -0.3017 7 7 4.1164 0.3430 -0.2208 8 6 5.4034 0.3854 -0.5023 9 7 6.0104 1.4951 -0.8822 10 6 5.3502 2.6324 -1.0000 11 6 3.9710 2.6508 -0.7127 12 6 3.2195 3.8395 -0.8234 13 1 2.1507 3.7909 -0.9709 14 6 3.8589 5.0818 -0.7421 15 7 4.9359 5.2168 -0.0111 16 14 3.1750 6.5472 -1.6772 17 1 3.7857 6.6002 -3.0297 18 1 1.7018 6.4096 -1.8043 19 1 3.4938 7.7968 -0.9408 20 1 -0.3633 -1.0263 -0.0538 21 1 -0.3634 0.4665 0.9156 22 1 -0.3633 0.5596 -0.8620 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 2.1002 3.0704 1.2516 26 1 0.6713 2.0328 1.4752 27 1 2.0476 0.2864 2.4989 28 1 3.5281 1.2187 2.1715 29 1 2.3359 1.8251 3.3458 30 1 5.9834 -0.5219 -0.4197 31 1 5.8586 3.5330 -1.3111 32 1 5.2409 4.4817 0.5435 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261239831.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:45 Heat of formation + Delta-G solvation = 34.810785 kcal Electronic energy + Delta-G solvation = -15515.119564 eV Core-core repulsion = 13089.287053 eV Total energy + Delta-G solvation = -2425.832511 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.66088 -37.08435 -34.62021 -31.74031 -31.01983 -30.20087 -28.02091 -25.66747 -23.41425 -22.54168 -21.70987 -19.64140 -18.15231 -16.54485 -16.08587 -15.36218 -14.36914 -14.32846 -13.75997 -13.35605 -12.98469 -12.66381 -12.62791 -12.12057 -12.08897 -11.76738 -11.30556 -11.25431 -11.07226 -10.75649 -10.52836 -10.49703 -10.23538 -9.60227 -9.41164 -9.08097 -8.36696 -7.92403 -7.59428 -7.31559 -4.61007 2.50490 2.59922 3.07545 3.17879 3.27434 3.85342 4.40562 4.57122 5.36538 5.43849 5.59087 5.69896 5.76603 5.80524 5.88046 5.92725 6.00967 6.12329 6.30991 6.36928 6.51351 6.56709 6.67133 6.78361 6.81818 7.00028 7.38282 7.63459 7.72118 7.80326 7.99325 8.48015 8.50877 8.80184 9.72993 9.73722 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024972 B = 0.011980 C = 0.009474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.005217 B = 2336.578961 C = 2954.767704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 N -0.455 5.455 4 C 0.055 3.945 5 C -0.180 4.180 6 C 0.211 3.789 7 N -0.521 5.521 8 C 0.127 3.873 9 N -0.500 5.500 10 C 0.013 3.987 11 C 0.011 3.989 12 C -0.471 4.471 13 H 0.095 0.905 14 C 0.037 3.963 15 N -0.772 5.772 16 Si 1.068 2.932 17 H -0.271 1.271 18 H -0.272 1.272 19 H -0.275 1.275 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.090 0.910 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.155 0.845 31 H 0.142 0.858 32 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.545 -1.629 1.562 6.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.067 4.067 3 N -0.174 5.174 4 C -0.072 4.072 5 C -0.239 4.239 6 C -0.032 4.032 7 N -0.238 5.238 8 C -0.156 4.156 9 N -0.213 5.213 10 C -0.157 4.157 11 C 0.003 3.997 12 C -0.499 4.499 13 H 0.113 0.887 14 C -0.188 4.188 15 N -0.393 5.393 16 Si 0.891 3.109 17 H -0.197 1.197 18 H -0.196 1.196 19 H -0.200 1.200 20 H 0.071 0.929 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.061 0.939 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.172 0.828 31 H 0.159 0.841 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.907 -0.690 0.969 6.026 hybrid contribution -0.223 -1.420 0.865 1.677 sum -6.130 -2.110 1.834 6.737 Atomic orbital electron populations 1.21825 0.96034 1.00725 1.01923 1.21848 0.93913 0.89246 1.01703 1.59128 1.12138 1.16654 1.29496 1.22134 0.99303 0.99928 0.85867 1.22336 1.01904 1.00402 0.99238 1.19562 0.88842 0.90781 1.04052 1.67690 1.07756 1.32066 1.16281 1.23198 0.87906 0.95524 1.08997 1.67621 1.41423 0.99791 1.12463 1.22865 0.92127 0.95352 1.05396 1.18808 0.93822 0.93882 0.93229 1.20546 0.98163 0.90568 1.40608 0.88703 1.27296 0.93493 1.02774 0.95217 1.70489 1.18184 1.36801 1.13816 0.83582 0.76781 0.73875 0.76709 1.19672 1.19640 1.20017 0.92936 0.93119 0.92213 0.91196 0.93888 0.89212 0.91201 0.93029 0.92454 0.92972 0.82809 0.84081 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.85 37.16 0.37 -1.79 16 2 C 0.06 1.11 4.71 -3.83 -0.02 1.10 16 3 N -0.45 -9.55 4.13 -172.48 -0.71 -10.26 16 4 C 0.05 1.04 5.64 -3.82 -0.02 1.01 16 5 C -0.18 -3.25 9.27 37.16 0.34 -2.91 16 6 C 0.21 5.09 4.73 -154.70 -0.73 4.36 16 7 N -0.52 -12.56 8.76 -13.32 -0.12 -12.68 16 8 C 0.13 3.07 12.26 -91.90 -1.13 1.94 16 9 N -0.50 -12.79 10.40 -13.99 -0.15 -12.93 16 10 C 0.01 0.34 9.40 -16.47 -0.15 0.18 16 11 C 0.01 0.29 5.24 -106.33 -0.56 -0.27 16 12 C -0.47 -11.47 7.04 -37.86 -0.27 -11.74 16 13 H 0.09 2.30 7.73 -52.49 -0.41 1.90 16 14 C 0.04 0.86 4.86 -17.32 -0.08 0.77 16 15 N -0.77 -18.95 12.35 55.55 0.69 -18.26 16 16 Si 1.07 19.98 30.03 -169.99 -5.10 14.87 16 17 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 18 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 19 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 20 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 21 H 0.05 0.69 6.78 -51.93 -0.35 0.34 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.07 1.39 7.74 -51.93 -0.40 0.98 16 24 H 0.04 0.80 5.98 -51.93 -0.31 0.49 16 25 H 0.09 1.88 6.50 -51.93 -0.34 1.54 16 26 H 0.07 1.14 6.62 -51.93 -0.34 0.80 16 27 H 0.05 0.87 6.50 -51.93 -0.34 0.53 16 28 H 0.06 1.22 6.96 -51.93 -0.36 0.86 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.15 3.27 8.06 -52.49 -0.42 2.84 16 31 H 0.14 3.68 6.66 -52.49 -0.35 3.33 16 32 H 0.30 7.67 7.07 -40.82 -0.29 7.38 16 LS Contribution 261.01 15.07 3.93 3.93 Total: -1.00 -26.59 261.01 -7.69 -34.27 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -3.98 Total: 8.38 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -2.25 Total: -7.33 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.29 Total: -54.13 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.10 Total: 14.87 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -26.59 -7.69 -34.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239831.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.084 kcal (2) G-P(sol) polarization free energy of solvation -26.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds