Wall clock time and date at job start Mon Mar 30 2020 02:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46896 * 109.47262 * 2 1 4 4 C 1.46905 * 110.99626 * 69.60888 * 3 2 1 5 5 C 1.52998 * 109.46838 * 61.08865 * 4 3 2 6 6 C 1.37779 * 111.00190 * 193.56554 * 3 2 1 7 7 N 1.32799 * 120.70955 * 343.17424 * 6 3 2 8 8 C 1.31808 * 120.95668 * 180.31518 * 7 6 3 9 9 N 1.32076 * 122.49385 * 359.65380 * 8 7 6 10 10 C 1.32029 * 121.30563 * 0.02562 * 9 8 7 11 11 C 1.40884 * 118.85309 * 359.97438 * 10 9 8 12 12 C 1.41071 * 121.09710 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00292 * 156.89042 * 12 11 10 14 14 C 1.39957 * 120.00130 * 336.88905 * 12 11 10 15 15 N 1.30863 * 119.99991 * 329.37512 * 14 12 11 16 16 Si 1.86803 * 120.00097 * 149.36520 * 14 12 11 17 17 H 1.48496 * 109.47421 * 270.00577 * 16 14 12 18 18 H 1.48507 * 109.46785 * 30.00614 * 16 14 12 19 19 H 1.48501 * 109.46765 * 150.00085 * 16 14 12 20 20 H 1.09002 * 109.46935 * 177.00079 * 1 2 3 21 21 H 1.08994 * 109.47417 * 297.00133 * 1 2 3 22 22 H 1.09003 * 109.46925 * 57.00659 * 1 2 3 23 23 H 1.09000 * 109.46904 * 240.00357 * 2 1 3 24 24 H 1.08993 * 109.46807 * 120.00385 * 2 1 3 25 25 H 1.09003 * 109.46866 * 181.08441 * 4 3 2 26 26 H 1.08994 * 109.47748 * 301.08327 * 4 3 2 27 27 H 1.09004 * 109.47196 * 294.94961 * 5 4 3 28 28 H 1.08999 * 109.47486 * 54.94853 * 5 4 3 29 29 H 1.08996 * 109.47184 * 174.95509 * 5 4 3 30 30 H 1.07997 * 118.75443 * 179.68221 * 8 7 6 31 31 H 1.08001 * 120.56998 * 179.97438 * 10 9 8 32 32 H 0.97005 * 119.99867 * 353.90554 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7446 2.0405 1.2856 5 6 2.4659 1.2887 2.4060 6 6 3.3632 1.4337 -0.3017 7 7 4.1164 0.3430 -0.2208 8 6 5.4034 0.3854 -0.5023 9 7 6.0104 1.4951 -0.8822 10 6 5.3502 2.6324 -1.0000 11 6 3.9710 2.6508 -0.7127 12 6 3.2195 3.8395 -0.8234 13 1 2.1507 3.7909 -0.9709 14 6 3.8589 5.0818 -0.7421 15 7 4.9359 5.2168 -0.0111 16 14 3.1750 6.5472 -1.6772 17 1 3.7857 6.6002 -3.0297 18 1 1.7018 6.4096 -1.8043 19 1 3.4938 7.7968 -0.9408 20 1 -0.3633 -1.0263 -0.0538 21 1 -0.3634 0.4665 0.9156 22 1 -0.3633 0.5596 -0.8620 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 2.1002 3.0704 1.2516 26 1 0.6713 2.0328 1.4752 27 1 2.0476 0.2864 2.4989 28 1 3.5281 1.2187 2.1715 29 1 2.3359 1.8251 3.3458 30 1 5.9834 -0.5219 -0.4197 31 1 5.8586 3.5330 -1.3111 32 1 5.2409 4.4817 0.5435 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261239831.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:45 Heat of formation + Delta-G solvation = 19.955687 kcal Electronic energy + Delta-G solvation = -15515.763729 eV Core-core repulsion = 13089.287053 eV Total energy + Delta-G solvation = -2426.476676 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.48902 -38.77932 -36.48386 -33.56470 -32.55269 -31.92170 -29.63282 -27.55033 -24.95487 -24.34047 -23.48768 -21.25092 -20.00481 -18.26940 -17.96908 -16.92858 -16.14828 -15.93086 -15.39408 -15.04834 -14.75691 -14.28393 -14.09563 -13.91288 -13.85132 -13.10460 -12.93968 -12.70259 -12.48456 -12.45016 -12.02187 -11.92447 -11.72115 -11.35363 -11.22349 -10.95372 -10.24509 -9.85576 -9.42461 -9.12819 -6.52737 0.62873 0.66021 1.54547 1.65689 1.83602 2.28270 2.60003 2.93062 3.48974 3.82272 3.92215 4.04942 4.22687 4.31698 4.42927 4.50641 4.56631 4.69385 4.74362 4.84852 4.96426 5.08823 5.12734 5.15994 5.20631 5.42947 5.46469 5.79293 5.86587 5.97665 6.18865 6.61382 6.65765 6.89487 7.80224 7.81244 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024972 B = 0.011980 C = 0.009474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.005217 B = 2336.578961 C = 2954.767704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.062 3.938 3 N -0.464 5.464 4 C 0.057 3.943 5 C -0.170 4.170 6 C 0.218 3.782 7 N -0.525 5.525 8 C 0.116 3.884 9 N -0.513 5.513 10 C -0.015 4.015 11 C -0.013 4.013 12 C -0.475 4.475 13 H 0.096 0.904 14 C 0.009 3.991 15 N -0.784 5.784 16 Si 1.117 2.883 17 H -0.266 1.266 18 H -0.252 1.252 19 H -0.270 1.270 20 H 0.077 0.923 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.065 0.935 26 H 0.105 0.895 27 H 0.066 0.934 28 H 0.018 0.982 29 H 0.074 0.926 30 H 0.181 0.819 31 H 0.130 0.870 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.704 -1.580 1.813 9.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 N -0.184 5.184 4 C -0.069 4.069 5 C -0.229 4.229 6 C -0.027 4.027 7 N -0.242 5.242 8 C -0.167 4.167 9 N -0.227 5.227 10 C -0.183 4.183 11 C -0.022 4.022 12 C -0.503 4.503 13 H 0.114 0.886 14 C -0.212 4.212 15 N -0.404 5.404 16 Si 0.934 3.066 17 H -0.191 1.191 18 H -0.176 1.176 19 H -0.194 1.194 20 H 0.096 0.904 21 H 0.083 0.917 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.084 0.916 26 H 0.123 0.877 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.093 0.907 30 H 0.198 0.802 31 H 0.148 0.852 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.056 -0.655 1.230 8.176 hybrid contribution 0.405 -1.512 0.833 1.773 sum -7.651 -2.167 2.063 8.215 Atomic orbital electron populations 1.21762 0.92637 1.02567 1.02499 1.21922 0.96551 0.87392 1.00661 1.59160 1.10064 1.18436 1.30699 1.22167 1.01332 0.98372 0.85039 1.22242 0.99202 1.01539 0.99921 1.19932 0.90180 0.90230 1.02348 1.67793 1.07720 1.32021 1.16691 1.23768 0.88435 0.96036 1.08488 1.67594 1.41830 1.00108 1.13127 1.22731 0.92765 0.95336 1.07479 1.19092 0.93943 0.95154 0.93988 1.20655 0.98105 0.90885 1.40647 0.88637 1.28649 0.92740 1.05016 0.94755 1.70599 1.19089 1.36117 1.14642 0.82993 0.77254 0.70860 0.75536 1.19143 1.17597 1.19440 0.90440 0.91668 0.92531 0.93164 0.94024 0.91634 0.87728 0.91507 0.96325 0.90693 0.80234 0.85220 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.85 71.98 0.71 -2.82 16 2 C 0.06 2.16 4.71 86.30 0.41 2.56 16 3 N -0.46 -18.94 4.13 -699.61 -2.89 -21.83 16 4 C 0.06 2.07 5.64 86.30 0.49 2.55 16 5 C -0.17 -5.88 9.27 71.98 0.67 -5.21 16 6 C 0.22 10.57 4.73 134.10 0.63 11.21 16 7 N -0.52 -25.37 8.76 -196.04 -1.72 -27.09 16 8 C 0.12 5.64 12.26 180.80 2.22 7.86 16 9 N -0.51 -26.87 10.40 -198.19 -2.06 -28.93 16 10 C -0.01 -0.79 9.40 85.31 0.80 0.01 16 11 C -0.01 -0.67 5.24 -20.97 -0.11 -0.78 16 12 C -0.48 -23.25 7.04 23.38 0.16 -23.09 16 13 H 0.10 4.58 7.73 -2.91 -0.02 4.56 16 14 C 0.01 0.40 4.86 85.25 0.41 0.81 16 15 N -0.78 -39.14 12.35 21.83 0.27 -38.87 16 16 Si 1.12 39.10 30.03 68.60 2.06 41.16 16 17 H -0.27 -9.12 7.11 99.48 0.71 -8.41 16 18 H -0.25 -8.03 7.11 99.48 0.71 -7.32 16 19 H -0.27 -9.19 7.11 99.48 0.71 -8.49 16 20 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 21 H 0.06 1.50 6.78 -2.39 -0.02 1.48 16 22 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.05 1.93 7.74 -2.39 -0.02 1.92 16 24 H 0.04 1.46 5.98 -2.39 -0.01 1.45 16 25 H 0.07 2.70 6.50 -2.39 -0.02 2.68 16 26 H 0.10 3.05 6.62 -2.39 -0.02 3.03 16 27 H 0.07 2.08 6.50 -2.38 -0.02 2.07 16 28 H 0.02 0.76 6.96 -2.39 -0.02 0.74 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.18 7.55 8.06 -2.91 -0.02 7.53 16 31 H 0.13 7.09 6.66 -2.91 -0.02 7.07 16 32 H 0.28 15.05 7.07 -92.70 -0.66 14.39 16 Total: -1.00 -57.73 261.01 3.28 -54.45 By element: Atomic # 1 Polarization: 26.78 SS G_CDS: 1.23 Total: 28.00 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 6.39 Total: -6.89 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -6.40 Total: -116.72 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.06 Total: 41.16 kcal Total: -57.73 3.28 -54.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239831.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.403 kcal (2) G-P(sol) polarization free energy of solvation -57.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.447 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds