Wall clock time and date at job start Mon Mar 30 2020 02:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47040 * 110.99858 * 2 1 4 4 C 1.53286 * 109.67194 * 287.40508 * 3 2 1 5 5 C 1.53599 * 108.79773 * 292.17796 * 4 3 2 6 6 N 1.46616 * 107.71654 * 46.37853 * 5 4 3 7 7 C 1.36954 * 128.07023 * 164.94767 * 6 5 4 8 8 C 1.34599 * 106.72605 * 180.02562 * 7 6 5 9 9 C 1.50700 * 125.81416 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47451 * 125.00191 * 9 8 7 11 11 H 1.08006 * 119.99614 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00280 * 179.97438 * 10 9 8 13 13 N 1.31512 * 120.00011 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99794 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.47207 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.46785 * 119.99819 * 14 12 10 17 17 H 1.48501 * 109.46808 * 240.00009 * 14 12 10 18 18 N 1.34536 * 108.36817 * 0.02562 * 8 7 6 19 19 C 1.30927 * 109.31897 * 0.02562 * 18 8 7 20 20 H 1.08997 * 109.47486 * 179.59011 * 1 2 3 21 21 H 1.08997 * 109.47120 * 299.59175 * 1 2 3 22 22 H 1.09004 * 109.46876 * 59.58586 * 1 2 3 23 23 H 1.08998 * 109.43682 * 47.44714 * 3 2 1 24 24 H 1.09001 * 109.42622 * 167.34665 * 3 2 1 25 25 H 1.09003 * 109.56007 * 172.39994 * 4 3 2 26 26 H 1.09003 * 109.62333 * 51.98792 * 4 3 2 27 27 H 1.09003 * 109.81033 * 286.82491 * 5 4 3 28 28 H 1.08995 * 109.80920 * 165.93491 * 5 4 3 29 29 H 1.07997 * 126.63962 * 359.97438 * 7 6 5 30 30 H 1.09006 * 109.47007 * 244.99613 * 9 8 7 31 31 H 1.08994 * 109.47360 * 4.99268 * 9 8 7 32 32 H 0.97000 * 119.99529 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3727 0.0000 4 6 1.7777 2.0092 -1.3773 5 6 2.6700 1.2916 -2.4011 6 7 2.5206 -0.1515 -2.1891 7 6 2.8907 -1.1707 -3.0257 8 6 2.5552 -2.3191 -2.4092 9 6 2.7723 -3.7078 -2.9527 10 6 3.5569 -4.5207 -1.9554 11 1 3.8678 -4.0760 -1.0215 12 6 3.8780 -5.8321 -2.2351 13 7 3.4991 -6.3737 -3.3720 14 14 4.8513 -6.8394 -0.9990 15 1 5.1533 -6.0048 0.1915 16 1 4.0526 -8.0208 -0.5850 17 1 6.1211 -7.2934 -1.6209 18 7 1.9931 -2.0161 -1.2250 19 6 1.9647 -0.7152 -1.0793 20 1 -0.3634 -1.0276 -0.0074 21 1 -0.3633 0.5075 0.8936 22 1 -0.3633 0.5203 -0.8863 23 1 1.4769 1.9605 0.7572 24 1 3.0622 1.3518 0.2252 25 1 2.0440 3.0655 -1.3375 26 1 0.7322 1.9048 -1.6674 27 1 3.7102 1.5812 -2.2518 28 1 2.3549 1.5511 -3.4117 29 1 3.3601 -1.0720 -3.9934 30 1 1.8076 -4.1834 -3.1302 31 1 3.3262 -3.6489 -3.8895 32 1 3.7247 -7.2964 -3.5685 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261242176.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:57 Heat of formation + Delta-G solvation = 73.552969 kcal Electronic energy + Delta-G solvation = -14987.232533 eV Core-core repulsion = 12563.080009 eV Total energy + Delta-G solvation = -2424.152524 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.70279 -37.75600 -34.38875 -32.98608 -30.68909 -29.35276 -27.24168 -26.91743 -24.20359 -22.57499 -22.42479 -19.45303 -18.62482 -16.76829 -16.22323 -15.74026 -15.18828 -14.83714 -14.46243 -14.19099 -13.99860 -13.24196 -12.56340 -12.34906 -12.10116 -12.01683 -11.66524 -11.53454 -11.26732 -11.12119 -10.59725 -10.52593 -9.72049 -9.35243 -9.21415 -8.92003 -8.50990 -8.22465 -7.16925 -5.84836 -3.83606 2.60907 3.07885 3.43555 3.50053 3.58089 3.71516 4.01205 4.32771 4.50243 4.63793 4.78369 4.98138 5.23529 5.24893 5.32084 5.41223 5.44389 5.50612 5.60026 5.76225 5.92290 6.21381 6.32808 6.60055 6.81313 7.02838 7.61803 7.68461 7.83449 8.05431 8.14232 8.57186 9.02611 9.21609 9.78053 11.26358 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045772 B = 0.006893 C = 0.006518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.586179 B = 4061.170030 C = 4294.557107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.443 5.443 3 C 0.049 3.951 4 C -0.171 4.171 5 C 0.107 3.893 6 N -0.492 5.492 7 C -0.085 4.085 8 C 0.066 3.934 9 C 0.091 3.909 10 C -0.492 4.492 11 H 0.059 0.941 12 C 0.052 3.948 13 N -0.903 5.903 14 Si 0.894 3.106 15 H -0.273 1.273 16 H -0.285 1.285 17 H -0.286 1.286 18 N -0.459 5.459 19 C 0.353 3.647 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.029 0.971 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.168 0.832 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.035 18.730 2.707 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.165 5.165 3 C -0.079 4.079 4 C -0.210 4.210 5 C -0.016 4.016 6 N -0.185 5.185 7 C -0.214 4.214 8 C -0.063 4.063 9 C 0.053 3.947 10 C -0.530 4.530 11 H 0.077 0.923 12 C -0.147 4.147 13 N -0.543 5.543 14 Si 0.722 3.278 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.213 1.213 18 N -0.181 5.181 19 C 0.003 3.997 20 H 0.103 0.897 21 H 0.095 0.905 22 H 0.048 0.952 23 H 0.111 0.889 24 H 0.103 0.897 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.185 0.815 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.144 17.893 3.590 18.714 hybrid contribution 0.717 0.499 -0.698 1.118 sum -3.427 18.391 2.892 18.930 Atomic orbital electron populations 1.22530 0.84800 1.03938 1.00505 1.59143 1.09048 1.12619 1.35680 1.22355 1.02176 0.87241 0.96099 1.22546 1.00793 1.01059 0.96652 1.21862 1.00737 0.78706 1.00289 1.45958 1.50204 1.06092 1.16241 1.22244 1.13307 0.86950 0.98902 1.21700 0.97773 0.96953 0.89871 1.17697 0.97394 0.84012 0.95601 1.21147 1.32856 0.95884 1.03151 0.92271 1.24989 0.96495 0.97781 0.95483 1.69968 1.47402 1.13784 1.23178 0.86495 0.79585 0.80101 0.81628 1.19748 1.21094 1.21252 1.70348 1.21008 1.07598 1.19122 1.21369 1.03613 0.89130 0.85581 0.89732 0.90503 0.95207 0.88934 0.89667 0.88904 0.90598 0.90287 0.89710 0.81498 0.94955 0.95047 0.93219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.32 60.06 0.56 0.95 16 2 N -0.44 -6.96 5.08 -182.19 -0.93 -7.89 16 3 C 0.05 0.54 5.77 -3.60 -0.02 0.52 16 4 C -0.17 -1.56 6.02 -26.27 -0.16 -1.72 16 5 C 0.11 1.23 7.13 -3.67 -0.03 1.21 16 6 N -0.49 -8.59 3.18 -117.16 -0.37 -8.96 16 7 C -0.09 -1.72 11.55 -16.55 -0.19 -1.91 16 8 C 0.07 1.62 6.29 -82.70 -0.52 1.10 16 9 C 0.09 2.53 5.53 -29.03 -0.16 2.37 16 10 C -0.49 -14.96 9.08 -34.44 -0.31 -15.27 16 11 H 0.06 1.85 7.74 -52.48 -0.41 1.45 16 12 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.90 -27.93 13.29 55.43 0.74 -27.20 16 14 Si 0.89 23.00 29.54 -169.99 -5.02 17.98 16 15 H -0.27 -7.01 7.11 56.52 0.40 -6.61 16 16 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 N -0.46 -11.25 11.25 -10.01 -0.11 -11.37 16 19 C 0.35 6.97 7.01 -319.32 -2.24 4.73 16 20 H 0.08 1.27 8.12 -51.93 -0.42 0.85 16 21 H 0.08 0.75 8.11 -51.93 -0.42 0.33 16 22 H 0.03 0.35 6.61 -51.93 -0.34 0.01 16 23 H 0.09 0.75 8.02 -51.93 -0.42 0.33 16 24 H 0.08 0.97 8.13 -51.93 -0.42 0.55 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.72 6.57 -51.93 -0.34 0.38 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.17 2.88 8.06 -52.49 -0.42 2.46 16 30 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.03 0.87 8.10 -51.93 -0.42 0.45 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 267.15 15.07 4.03 4.03 Total: -1.00 -35.44 267.15 -9.28 -44.72 By element: Atomic # 1 Polarization: -0.32 SS G_CDS: -4.44 Total: -4.77 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -3.17 Total: -6.55 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.67 Total: -55.41 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -35.44 -9.28 -44.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261242176.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.268 kcal (2) G-P(sol) polarization free energy of solvation -35.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds