Wall clock time and date at job start Mon Mar 30 2020 03:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46503 * 119.99518 * 2 1 4 4 C 1.39000 * 120.00506 * 180.02562 * 2 1 3 5 5 C 1.39139 * 119.70010 * 5.01584 * 4 2 1 6 6 C 1.38298 * 119.09278 * 179.97438 * 5 4 2 7 7 C 1.50702 * 120.74729 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47044 * 339.99398 * 7 6 5 9 9 N 1.46907 * 109.46907 * 219.99911 * 7 6 5 10 10 C 1.50701 * 109.47281 * 99.99791 * 7 6 5 11 11 H 1.08002 * 120.00000 * 0.02562 * 10 7 6 12 12 C 1.37873 * 119.99779 * 179.97438 * 10 7 6 13 13 N 1.31512 * 120.00217 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 120.00000 * 180.02562 * 12 10 7 15 15 H 1.48503 * 109.47200 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47524 * 120.00081 * 14 12 10 17 17 H 1.48503 * 109.47182 * 240.00202 * 14 12 10 18 18 C 1.38886 * 118.50933 * 359.97438 * 6 5 4 19 19 C 1.38025 * 119.32533 * 0.02562 * 18 6 5 20 20 N 1.31974 * 120.85781 * 359.97438 * 19 18 6 21 21 H 1.09002 * 109.47538 * 269.99794 * 1 2 3 22 22 H 1.08998 * 109.47549 * 30.00399 * 1 2 3 23 23 H 1.09002 * 109.46776 * 149.99770 * 1 2 3 24 24 H 1.09001 * 109.47411 * 269.99873 * 3 2 1 25 25 H 1.09004 * 109.47563 * 30.00402 * 3 2 1 26 26 H 1.09003 * 109.47018 * 149.99813 * 3 2 1 27 27 H 1.07994 * 120.45330 * 359.96553 * 5 4 2 28 28 H 1.00897 * 110.99612 * 176.04219 * 9 7 6 29 29 H 1.00901 * 111.00098 * 299.99844 * 9 7 6 30 30 H 0.97001 * 120.00240 * 179.97438 * 13 12 10 31 31 H 1.07999 * 120.33944 * 180.02562 * 18 6 5 32 32 H 1.08006 * 119.56985 * 180.27099 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1601 -1.2037 -0.0005 5 6 1.4622 -2.4027 -0.1067 6 6 2.1664 -3.5930 -0.1065 7 6 1.4483 -4.9131 -0.2191 8 1 0.4030 -4.7831 0.0609 9 7 2.0777 -5.8910 0.6786 10 6 1.5299 -5.4099 -1.6395 11 1 2.0501 -4.8280 -2.3861 12 6 0.9413 -6.6076 -1.9858 13 7 0.3083 -7.3163 -1.0766 14 14 1.0430 -7.2238 -3.7463 15 1 1.8046 -6.2495 -4.5685 16 1 1.7331 -8.5384 -3.7717 17 1 -0.3275 -7.3735 -4.2983 18 6 3.5504 -3.5444 -0.0003 19 6 4.1779 -2.3193 0.1018 20 7 3.4802 -1.1990 0.0990 21 1 -0.3634 0.0000 1.0277 22 1 -0.3634 0.8899 -0.5139 23 1 -0.3633 -0.8900 -0.5139 24 1 2.3791 1.5835 -1.0277 25 1 1.6083 2.0285 0.5139 26 1 3.1498 1.1385 0.5139 27 1 0.3853 -2.4039 -0.1881 28 1 1.5750 -6.7657 0.6698 29 1 3.0482 -6.0292 0.4394 30 1 -0.1061 -8.1588 -1.3203 31 1 4.1297 -4.4558 0.0025 32 1 5.2543 -2.2766 0.1802 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261249052.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:27 Heat of formation + Delta-G solvation = 24.261247 kcal Electronic energy + Delta-G solvation = -14819.329341 eV Core-core repulsion = 12393.039367 eV Total energy + Delta-G solvation = -2426.289973 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.11247 -37.75346 -36.53695 -33.91453 -31.98351 -31.04214 -29.05914 -28.03923 -26.14991 -24.65223 -23.28932 -21.11662 -18.64755 -18.12406 -17.39158 -16.67357 -16.53963 -16.11509 -15.86067 -15.10070 -14.88943 -14.71368 -14.13171 -13.88693 -13.43939 -13.31503 -13.01502 -12.94805 -12.78678 -12.74988 -12.29024 -11.98585 -11.84727 -10.81024 -10.71950 -10.25536 -10.22302 -9.22429 -8.36082 -8.16452 -6.42098 0.52513 0.72740 1.34877 1.38380 1.49502 2.12594 2.34833 3.01285 3.16524 3.73448 4.05625 4.25756 4.38103 4.46827 4.50422 4.56601 4.64784 4.67483 4.83914 4.89328 4.97074 5.04113 5.18386 5.34647 5.60624 5.74774 5.94543 6.04359 6.16480 6.51504 6.59233 6.87806 7.09259 7.30611 7.34658 8.79164 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034826 B = 0.007523 C = 0.007105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.800597 B = 3721.139904 C = 3939.860894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.628 5.628 3 C 0.103 3.897 4 C 0.387 3.613 5 C -0.258 4.258 6 C 0.029 3.971 7 C 0.244 3.756 8 H 0.014 0.986 9 N -0.840 5.840 10 C -0.558 4.558 11 H 0.044 0.956 12 C 0.025 3.975 13 N -0.914 5.914 14 Si 0.960 3.040 15 H -0.275 1.275 16 H -0.274 1.274 17 H -0.278 1.278 18 C -0.229 4.229 19 C 0.138 3.862 20 N -0.566 5.566 21 H 0.057 0.943 22 H 0.096 0.904 23 H 0.059 0.941 24 H 0.045 0.955 25 H 0.087 0.913 26 H 0.065 0.935 27 H 0.124 0.876 28 H 0.347 0.653 29 H 0.321 0.679 30 H 0.269 0.731 31 H 0.129 0.871 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.534 11.893 1.202 12.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.344 5.344 3 C -0.039 4.039 4 C 0.153 3.847 5 C -0.283 4.283 6 C 0.021 3.979 7 C 0.133 3.867 8 H 0.032 0.968 9 N -0.369 5.369 10 C -0.598 4.598 11 H 0.063 0.937 12 C -0.175 4.175 13 N -0.553 5.553 14 Si 0.786 3.214 15 H -0.199 1.199 16 H -0.200 1.200 17 H -0.204 1.204 18 C -0.252 4.252 19 C -0.018 4.018 20 N -0.285 5.285 21 H 0.076 0.924 22 H 0.115 0.885 23 H 0.078 0.922 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.161 0.839 29 H 0.131 0.869 30 H 0.079 0.921 31 H 0.147 0.853 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.562 13.221 1.898 13.600 hybrid contribution -0.561 -2.080 -1.837 2.831 sum 2.002 11.141 0.061 11.320 Atomic orbital electron populations 1.21822 0.77437 1.03659 1.02073 1.46356 1.05898 1.02682 1.79463 1.21585 0.97448 0.83618 1.01275 1.18422 0.88757 0.86277 0.91252 1.21313 1.00908 0.91744 1.14369 1.20508 0.94577 0.95209 0.87588 1.17804 0.92126 0.86491 0.90242 0.96792 1.59460 1.06003 1.16324 1.55158 1.21938 1.35881 1.05889 0.96050 0.93748 1.25714 0.93783 0.96631 1.01408 1.69840 1.35856 1.14725 1.34915 0.85476 0.77920 0.78136 0.79886 1.19935 1.19986 1.20355 1.21696 0.94452 0.99645 1.09452 1.22739 1.00439 0.86278 0.92310 1.67155 1.06105 1.32089 1.23136 0.92433 0.88518 0.92214 0.93605 0.89408 0.91621 0.85817 0.83858 0.86871 0.92117 0.85324 0.80009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.16 10.28 127.77 1.31 3.47 16 2 N -0.63 -18.59 3.39 -753.97 -2.56 -21.15 16 3 C 0.10 2.37 10.50 127.77 1.34 3.71 16 4 C 0.39 14.49 7.37 133.07 0.98 15.47 16 5 C -0.26 -10.83 8.93 22.50 0.20 -10.63 16 6 C 0.03 1.34 4.91 -19.69 -0.10 1.25 16 7 C 0.24 12.55 2.98 43.42 0.13 12.68 16 8 H 0.01 0.81 8.04 -2.39 -0.02 0.79 16 9 N -0.84 -40.88 9.03 -174.94 -1.58 -42.46 16 10 C -0.56 -30.53 8.71 25.60 0.22 -30.31 16 11 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 12 C 0.03 1.36 5.38 84.65 0.46 1.81 16 13 N -0.91 -50.35 11.54 21.45 0.25 -50.10 16 14 Si 0.96 42.80 29.54 68.60 2.03 44.83 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 17 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 18 C -0.23 -9.20 9.38 22.37 0.21 -8.99 16 19 C 0.14 4.81 11.17 84.62 0.95 5.76 16 20 N -0.57 -20.79 9.08 -193.26 -1.75 -22.54 16 21 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.10 1.62 8.07 -2.39 -0.02 1.60 16 23 H 0.06 1.57 5.98 -2.39 -0.01 1.55 16 24 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.09 1.45 8.07 -2.39 -0.02 1.43 16 26 H 0.06 1.66 7.30 -2.39 -0.02 1.65 16 27 H 0.12 5.02 6.02 -2.91 -0.02 5.01 16 28 H 0.35 17.98 7.08 -89.70 -0.63 17.34 16 29 H 0.32 14.63 7.43 -89.69 -0.67 13.96 16 30 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 31 H 0.13 4.92 6.78 -2.91 -0.02 4.90 16 32 H 0.18 4.79 8.06 -2.91 -0.02 4.76 16 Total: -1.00 -62.32 268.67 1.92 -60.39 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.16 Total: 36.81 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.70 Total: -5.78 kcal Atomic # 7 Polarization: -130.61 SS G_CDS: -5.64 Total: -136.25 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -62.32 1.92 -60.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261249052.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.654 kcal (2) G-P(sol) polarization free energy of solvation -62.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds