Wall clock time and date at job start Mon Mar 30 2020 03:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 119.99940 * 2 1 4 4 C 1.38997 * 119.99763 * 180.02562 * 2 1 3 5 5 C 1.39141 * 119.70964 * 5.27030 * 4 2 1 6 6 C 1.38295 * 119.10074 * 180.22595 * 5 4 2 7 7 C 1.50697 * 120.75071 * 179.78115 * 6 5 4 8 8 H 1.09001 * 109.46613 * 19.72486 * 7 6 5 9 9 N 1.46906 * 109.46982 * 139.72272 * 7 6 5 10 10 C 1.50698 * 109.47576 * 259.72519 * 7 6 5 11 11 H 1.08004 * 119.99528 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00356 * 180.02562 * 10 7 6 13 13 N 1.31512 * 120.00020 * 179.97438 * 12 10 7 14 14 Si 1.86803 * 119.99603 * 359.97438 * 12 10 7 15 15 H 1.48495 * 109.47195 * 90.00782 * 14 12 10 16 16 H 1.48502 * 109.46875 * 210.00223 * 14 12 10 17 17 H 1.48493 * 109.47388 * 330.00132 * 14 12 10 18 18 C 1.38891 * 118.50153 * 359.51413 * 6 5 4 19 19 C 1.38013 * 119.33136 * 0.24260 * 18 6 5 20 20 N 1.31981 * 120.85704 * 0.02562 * 19 18 6 21 21 H 1.09007 * 109.47516 * 269.99838 * 1 2 3 22 22 H 1.08994 * 109.47050 * 29.99795 * 1 2 3 23 23 H 1.09002 * 109.47500 * 150.00073 * 1 2 3 24 24 H 1.08995 * 109.47242 * 270.00088 * 3 2 1 25 25 H 1.09003 * 109.46975 * 30.00507 * 3 2 1 26 26 H 1.08998 * 109.46878 * 149.99856 * 3 2 1 27 27 H 1.08003 * 120.45121 * 0.02562 * 5 4 2 28 28 H 1.00896 * 111.00309 * 60.00059 * 9 7 6 29 29 H 1.00902 * 110.99923 * 183.96223 * 9 7 6 30 30 H 0.97000 * 119.99684 * 179.97438 * 13 12 10 31 31 H 1.08005 * 120.33188 * 180.22717 * 18 6 5 32 32 H 1.08001 * 119.57438 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1599 -1.2038 -0.0005 5 6 1.4625 -2.4026 -0.1121 6 6 2.1662 -3.5931 -0.1065 7 6 1.4481 -4.9131 -0.2202 8 1 0.4557 -4.7517 -0.6410 9 7 2.2113 -5.8118 -1.0965 10 6 1.3192 -5.5343 1.1467 11 1 1.7179 -5.0244 2.0113 12 6 0.6934 -6.7541 1.2935 13 7 0.5813 -7.2964 2.4863 14 14 0.0046 -7.6363 -0.2022 15 1 1.0482 -8.5211 -0.7791 16 1 -1.1686 -8.4525 0.2014 17 1 -0.4137 -6.6366 -1.2175 18 6 3.5501 -3.5445 0.0006 19 6 4.1777 -2.3196 0.1026 20 7 3.4801 -1.1992 0.1001 21 1 -0.3634 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 2.3791 1.5834 -1.0276 25 1 1.6084 2.0283 0.5139 26 1 3.1499 1.1383 0.5139 27 1 0.3860 -2.4035 -0.1985 28 1 3.1359 -5.9772 -0.7279 29 1 1.7188 -6.6806 -1.2408 30 1 0.1407 -8.1543 2.5896 31 1 4.1292 -4.4562 0.0042 32 1 5.2536 -2.2772 0.1865 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261249053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:29 Heat of formation + Delta-G solvation = 54.334659 kcal Electronic energy + Delta-G solvation = -14864.366682 eV Core-core repulsion = 12439.380790 eV Total energy + Delta-G solvation = -2424.985892 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.73240 -36.46748 -35.05927 -32.15772 -30.82303 -29.75230 -28.01623 -26.29737 -24.80495 -23.07907 -21.81913 -19.58206 -17.16982 -16.69109 -16.04972 -15.36293 -14.98201 -14.95999 -14.28521 -13.95088 -13.47336 -13.00269 -12.85140 -12.50984 -12.43437 -12.01874 -11.89548 -11.66687 -11.03359 -10.96716 -10.82511 -10.26612 -9.65342 -9.46404 -8.86617 -8.80572 -8.74982 -7.57264 -7.09037 -6.27564 -4.31790 1.95802 2.20915 3.10117 3.24406 3.24818 3.27436 4.18904 4.58197 4.95865 5.03075 5.23667 5.38298 5.46489 5.54920 5.72295 5.79263 5.82340 5.91120 5.95507 6.05370 6.08884 6.40228 6.59981 6.78613 7.12886 7.29726 7.35896 7.46067 7.82144 8.02023 8.23301 8.43856 8.70141 8.79596 9.30599 10.84938 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038403 B = 0.007820 C = 0.007277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.930187 B = 3579.649655 C = 3847.073032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.627 5.627 3 C 0.106 3.894 4 C 0.391 3.609 5 C -0.238 4.238 6 C 0.059 3.941 7 C 0.206 3.794 8 H 0.051 0.949 9 N -0.847 5.847 10 C -0.545 4.545 11 H 0.077 0.923 12 C 0.074 3.926 13 N -0.888 5.888 14 Si 0.873 3.127 15 H -0.274 1.274 16 H -0.290 1.290 17 H -0.259 1.259 18 C -0.212 4.212 19 C 0.131 3.869 20 N -0.558 5.558 21 H 0.048 0.952 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.039 0.961 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.126 0.874 28 H 0.333 0.667 29 H 0.318 0.682 30 H 0.267 0.733 31 H 0.126 0.874 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 11.041 -5.821 12.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.343 5.343 3 C -0.038 4.038 4 C 0.159 3.841 5 C -0.262 4.262 6 C 0.051 3.949 7 C 0.097 3.903 8 H 0.069 0.931 9 N -0.381 5.381 10 C -0.585 4.585 11 H 0.095 0.905 12 C -0.130 4.130 13 N -0.525 5.525 14 Si 0.702 3.298 15 H -0.200 1.200 16 H -0.217 1.217 17 H -0.184 1.184 18 C -0.235 4.235 19 C -0.025 4.025 20 N -0.277 5.277 21 H 0.067 0.933 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.134 0.866 30 H 0.077 0.923 31 H 0.144 0.856 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.618 12.397 -6.203 13.956 hybrid contribution -0.880 -2.069 0.238 2.261 sum 0.739 10.327 -5.965 11.949 Atomic orbital electron populations 1.21627 0.79006 1.02579 1.01293 1.45991 1.04689 1.02913 1.80757 1.21419 0.97574 0.84267 1.00501 1.18186 0.88534 0.85411 0.91999 1.21226 1.00698 0.91235 1.13084 1.20148 0.93248 0.94783 0.86711 1.18511 0.92537 0.87026 0.92276 0.93071 1.59697 1.07027 1.18014 1.53360 1.21552 1.38989 1.04796 0.93174 0.90522 1.25019 0.94870 0.97147 0.95933 1.69891 1.42522 1.18024 1.22015 0.87002 0.79169 0.80331 0.83323 1.20032 1.21656 1.18370 1.21592 0.95120 0.98641 1.08126 1.22186 0.98863 0.87205 0.94234 1.67004 1.06185 1.31973 1.22514 0.93338 0.91714 0.90958 0.94241 0.92601 0.90519 0.85646 0.85449 0.86602 0.92288 0.85595 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.20 10.29 59.85 0.62 1.82 16 2 N -0.63 -9.60 3.39 -189.67 -0.64 -10.24 16 3 C 0.11 1.32 10.50 59.85 0.63 1.95 16 4 C 0.39 7.31 7.37 -155.03 -1.14 6.16 16 5 C -0.24 -4.74 8.94 -39.23 -0.35 -5.09 16 6 C 0.06 1.28 4.91 -104.36 -0.51 0.77 16 7 C 0.21 4.84 2.51 -70.02 -0.18 4.67 16 8 H 0.05 1.24 7.10 -51.93 -0.37 0.87 16 9 N -0.85 -18.48 8.99 -6.65 -0.06 -18.54 16 10 C -0.55 -14.95 9.29 -34.44 -0.32 -15.27 16 11 H 0.08 2.34 7.98 -52.48 -0.42 1.92 16 12 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 13 N -0.89 -26.32 13.96 55.43 0.77 -25.55 16 14 Si 0.87 20.55 24.61 -169.99 -4.18 16.37 16 15 H -0.27 -6.18 7.01 56.52 0.40 -5.78 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 17 H -0.26 -5.92 6.54 56.52 0.37 -5.56 16 18 C -0.21 -4.15 9.38 -39.42 -0.37 -4.52 16 19 C 0.13 2.32 11.17 -17.57 -0.20 2.13 16 20 N -0.56 -10.44 9.08 -12.44 -0.11 -10.56 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 23 H 0.07 0.91 5.97 -51.93 -0.31 0.60 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.56 8.07 -51.93 -0.42 0.14 16 26 H 0.08 1.05 7.30 -51.93 -0.38 0.67 16 27 H 0.13 2.33 6.02 -52.48 -0.32 2.01 16 28 H 0.33 6.86 7.43 -39.29 -0.29 6.57 16 29 H 0.32 7.02 4.30 -39.29 -0.17 6.86 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.13 2.32 6.78 -52.48 -0.36 1.97 16 32 H 0.15 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 262.17 15.07 3.95 3.95 Total: -1.00 -31.01 262.17 -6.08 -37.09 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -3.89 Total: 12.89 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -1.92 Total: -5.41 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: -0.04 Total: -64.89 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.18 Total: 16.37 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.01 -6.08 -37.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261249053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.427 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds