Wall clock time and date at job start Mon Mar 30 2020 03:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 119.99940 * 2 1 4 4 C 1.38997 * 119.99763 * 180.02562 * 2 1 3 5 5 C 1.39141 * 119.70964 * 5.27030 * 4 2 1 6 6 C 1.38295 * 119.10074 * 180.22595 * 5 4 2 7 7 C 1.50697 * 120.75071 * 179.78115 * 6 5 4 8 8 H 1.09001 * 109.46613 * 19.72486 * 7 6 5 9 9 N 1.46906 * 109.46982 * 139.72272 * 7 6 5 10 10 C 1.50698 * 109.47576 * 259.72519 * 7 6 5 11 11 H 1.08004 * 119.99528 * 359.97438 * 10 7 6 12 12 C 1.37876 * 120.00356 * 180.02562 * 10 7 6 13 13 N 1.31512 * 120.00020 * 179.97438 * 12 10 7 14 14 Si 1.86803 * 119.99603 * 359.97438 * 12 10 7 15 15 H 1.48495 * 109.47195 * 90.00782 * 14 12 10 16 16 H 1.48502 * 109.46875 * 210.00223 * 14 12 10 17 17 H 1.48493 * 109.47388 * 330.00132 * 14 12 10 18 18 C 1.38891 * 118.50153 * 359.51413 * 6 5 4 19 19 C 1.38013 * 119.33136 * 0.24260 * 18 6 5 20 20 N 1.31981 * 120.85704 * 0.02562 * 19 18 6 21 21 H 1.09007 * 109.47516 * 269.99838 * 1 2 3 22 22 H 1.08994 * 109.47050 * 29.99795 * 1 2 3 23 23 H 1.09002 * 109.47500 * 150.00073 * 1 2 3 24 24 H 1.08995 * 109.47242 * 270.00088 * 3 2 1 25 25 H 1.09003 * 109.46975 * 30.00507 * 3 2 1 26 26 H 1.08998 * 109.46878 * 149.99856 * 3 2 1 27 27 H 1.08003 * 120.45121 * 0.02562 * 5 4 2 28 28 H 1.00896 * 111.00309 * 60.00059 * 9 7 6 29 29 H 1.00902 * 110.99923 * 183.96223 * 9 7 6 30 30 H 0.97000 * 119.99684 * 179.97438 * 13 12 10 31 31 H 1.08005 * 120.33188 * 180.22717 * 18 6 5 32 32 H 1.08001 * 119.57438 * 179.97438 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1599 -1.2038 -0.0005 5 6 1.4625 -2.4026 -0.1121 6 6 2.1662 -3.5931 -0.1065 7 6 1.4481 -4.9131 -0.2202 8 1 0.4557 -4.7517 -0.6410 9 7 2.2113 -5.8118 -1.0965 10 6 1.3192 -5.5343 1.1467 11 1 1.7179 -5.0244 2.0113 12 6 0.6934 -6.7541 1.2935 13 7 0.5813 -7.2964 2.4863 14 14 0.0046 -7.6363 -0.2022 15 1 1.0482 -8.5211 -0.7791 16 1 -1.1686 -8.4525 0.2014 17 1 -0.4137 -6.6366 -1.2175 18 6 3.5501 -3.5445 0.0006 19 6 4.1777 -2.3196 0.1026 20 7 3.4801 -1.1992 0.1001 21 1 -0.3634 0.0000 1.0277 22 1 -0.3633 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 2.3791 1.5834 -1.0276 25 1 1.6084 2.0283 0.5139 26 1 3.1499 1.1383 0.5139 27 1 0.3860 -2.4035 -0.1985 28 1 3.1359 -5.9772 -0.7279 29 1 1.7188 -6.6806 -1.2408 30 1 0.1407 -8.1543 2.5896 31 1 4.1292 -4.4562 0.0042 32 1 5.2536 -2.2772 0.1865 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261249053.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:29 Heat of formation + Delta-G solvation = 32.054665 kcal Electronic energy + Delta-G solvation = -14865.332815 eV Core-core repulsion = 12439.380790 eV Total energy + Delta-G solvation = -2425.952025 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.16609 -37.89190 -36.66187 -34.17773 -32.43254 -31.13697 -29.10295 -28.20709 -26.14836 -24.73733 -23.28190 -21.11185 -19.17849 -18.23701 -17.50313 -16.96392 -16.56592 -16.15137 -15.98384 -15.33069 -14.92368 -14.77522 -14.37273 -14.13014 -13.63457 -13.38810 -13.09588 -12.93847 -12.82334 -12.76043 -12.39071 -12.01949 -11.67518 -10.93996 -10.77496 -10.36893 -10.28119 -9.42548 -8.42505 -8.37721 -6.52053 0.49144 0.68070 1.23987 1.32075 1.41549 2.11142 2.19597 2.90001 3.11273 3.66559 3.88402 4.20394 4.24028 4.33293 4.45146 4.50403 4.52401 4.59872 4.83881 4.86788 4.88574 4.99430 5.05121 5.21189 5.33619 5.69983 5.84637 5.99845 6.14408 6.35139 6.48300 6.52984 6.66906 7.14570 7.28414 8.73955 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038403 B = 0.007820 C = 0.007277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.930187 B = 3579.649655 C = 3847.073032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.628 5.628 3 C 0.103 3.897 4 C 0.386 3.614 5 C -0.255 4.255 6 C 0.032 3.968 7 C 0.215 3.785 8 H 0.045 0.955 9 N -0.836 5.836 10 C -0.548 4.548 11 H 0.029 0.971 12 C 0.020 3.980 13 N -0.936 5.936 14 Si 0.940 3.060 15 H -0.253 1.253 16 H -0.290 1.290 17 H -0.247 1.247 18 C -0.229 4.229 19 C 0.139 3.861 20 N -0.565 5.565 21 H 0.051 0.949 22 H 0.099 0.901 23 H 0.065 0.935 24 H 0.050 0.950 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.131 0.869 28 H 0.340 0.660 29 H 0.318 0.682 30 H 0.270 0.730 31 H 0.131 0.869 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.495 12.159 -7.474 14.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.343 5.343 3 C -0.040 4.040 4 C 0.152 3.848 5 C -0.280 4.280 6 C 0.024 3.976 7 C 0.105 3.895 8 H 0.063 0.937 9 N -0.369 5.369 10 C -0.588 4.588 11 H 0.047 0.953 12 C -0.180 4.180 13 N -0.575 5.575 14 Si 0.764 3.236 15 H -0.178 1.178 16 H -0.217 1.217 17 H -0.171 1.171 18 C -0.252 4.252 19 C -0.017 4.017 20 N -0.284 5.284 21 H 0.070 0.930 22 H 0.117 0.883 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.153 0.847 29 H 0.134 0.866 30 H 0.079 0.921 31 H 0.149 0.851 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.661 13.560 -7.868 15.764 hybrid contribution -0.866 -2.271 0.833 2.569 sum 0.795 11.289 -7.034 13.325 Atomic orbital electron populations 1.21841 0.77351 1.03944 1.01945 1.46364 1.05943 1.02670 1.79341 1.21587 0.97343 0.83596 1.01445 1.18438 0.88753 0.86383 0.91211 1.21333 1.01129 0.91526 1.13993 1.20136 0.94352 0.94328 0.88784 1.18283 0.92935 0.88271 0.90012 0.93724 1.59643 1.07152 1.17737 1.52418 1.21709 1.38470 1.04868 0.93768 0.95260 1.25889 0.95071 0.97940 0.99074 1.70042 1.43993 1.18801 1.24646 0.85924 0.78783 0.79359 0.79487 1.17761 1.21693 1.17086 1.21716 0.94509 0.99795 1.09201 1.22737 1.00514 0.86280 0.92190 1.67161 1.06231 1.32145 1.22823 0.92995 0.88293 0.91669 0.93164 0.89600 0.91832 0.85154 0.84650 0.86621 0.92060 0.85106 0.80023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.04 10.29 127.77 1.31 3.35 16 2 N -0.63 -17.96 3.39 -753.99 -2.56 -20.52 16 3 C 0.10 2.29 10.50 127.77 1.34 3.63 16 4 C 0.39 14.01 7.37 133.07 0.98 15.00 16 5 C -0.25 -10.15 8.94 22.50 0.20 -9.95 16 6 C 0.03 1.40 4.91 -19.70 -0.10 1.30 16 7 C 0.21 10.14 2.51 43.42 0.11 10.25 16 8 H 0.04 2.15 7.10 -2.39 -0.02 2.14 16 9 N -0.84 -35.48 8.99 -174.95 -1.57 -37.05 16 10 C -0.55 -30.88 9.29 25.60 0.24 -30.64 16 11 H 0.03 1.87 7.98 -2.91 -0.02 1.85 16 12 C 0.02 1.12 5.47 84.65 0.46 1.58 16 13 N -0.94 -56.93 13.96 21.45 0.30 -56.63 16 14 Si 0.94 42.12 24.61 68.60 1.69 43.81 16 15 H -0.25 -10.42 7.01 99.48 0.70 -9.73 16 16 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 17 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 18 C -0.23 -8.88 9.38 22.37 0.21 -8.67 16 19 C 0.14 4.72 11.17 84.62 0.95 5.67 16 20 N -0.56 -20.30 9.08 -193.27 -1.75 -22.05 16 21 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 22 H 0.10 1.52 8.07 -2.39 -0.02 1.50 16 23 H 0.06 1.55 5.97 -2.39 -0.01 1.53 16 24 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.09 1.40 8.07 -2.39 -0.02 1.38 16 26 H 0.06 1.60 7.30 -2.39 -0.02 1.58 16 27 H 0.13 4.88 6.02 -2.91 -0.02 4.86 16 28 H 0.34 13.70 7.43 -89.70 -0.67 13.04 16 29 H 0.32 13.38 4.30 -89.69 -0.39 13.00 16 30 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 31 H 0.13 4.78 6.78 -2.91 -0.02 4.76 16 32 H 0.18 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -67.66 262.17 1.83 -65.83 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: 0.02 Total: 35.09 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 5.71 Total: -8.47 kcal Atomic # 7 Polarization: -130.67 SS G_CDS: -5.58 Total: -136.25 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 1.69 Total: 43.81 kcal Total: -67.66 1.83 -65.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261249053.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.885 kcal (2) G-P(sol) polarization free energy of solvation -67.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds