Wall clock time and date at job start Mon Mar 30 2020 02:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46964 * 111.06010 * 2 1 4 4 C 1.53202 * 109.72305 * 174.08664 * 3 2 1 5 5 C 1.53558 * 108.90394 * 292.47158 * 4 3 2 6 6 N 1.46749 * 107.80330 * 46.65863 * 5 4 3 7 7 N 1.39539 * 127.66462 * 164.73251 * 6 5 4 8 8 C 1.31042 * 108.24763 * 180.02562 * 7 6 5 9 9 C 1.50697 * 125.81972 * 180.02562 * 8 7 6 10 10 C 1.50707 * 109.46845 * 304.96789 * 9 8 7 11 11 H 1.07999 * 119.99866 * 0.02562 * 10 9 8 12 12 C 1.37871 * 119.99910 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00264 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99875 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47112 * 90.00428 * 14 12 10 16 16 H 1.48504 * 109.46940 * 209.99898 * 14 12 10 17 17 H 1.48495 * 109.47460 * 330.00317 * 14 12 10 18 18 C 1.39932 * 108.36413 * 359.97438 * 8 7 6 19 19 C 1.35539 * 124.23448 * 344.75894 * 6 5 4 20 20 H 1.09003 * 109.47421 * 292.44997 * 1 2 3 21 21 H 1.09002 * 109.47947 * 52.45089 * 1 2 3 22 22 H 1.08999 * 109.46956 * 172.44975 * 1 2 3 23 23 H 1.08994 * 109.27139 * 54.07700 * 3 2 1 24 24 H 1.09003 * 109.47294 * 294.22012 * 3 2 1 25 25 H 1.09001 * 109.56352 * 172.64861 * 4 3 2 26 26 H 1.08995 * 109.66010 * 52.35894 * 4 3 2 27 27 H 1.09001 * 109.78912 * 287.08310 * 5 4 3 28 28 H 1.08998 * 109.79110 * 166.24056 * 5 4 3 29 29 H 1.08994 * 109.47459 * 64.96670 * 9 8 7 30 30 H 1.09001 * 109.47259 * 184.97238 * 9 8 7 31 31 H 0.96998 * 120.00353 * 179.97438 * 13 12 10 32 32 H 1.08001 * 126.11667 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9970 1.3715 0.0000 4 6 3.5215 1.3385 0.1486 5 6 3.8736 0.8227 1.5514 6 7 3.0570 -0.3690 1.8094 7 7 3.2382 -1.3271 2.8076 8 6 2.2922 -2.2262 2.6899 9 6 2.1131 -3.4380 3.5676 10 6 3.3862 -4.2446 3.5762 11 1 4.2396 -3.9125 3.0037 12 6 3.4613 -5.4062 4.3149 13 7 2.4219 -5.8108 5.0117 14 14 5.0394 -6.4055 4.3261 15 1 5.9128 -5.9391 5.4329 16 1 4.7148 -7.8412 4.5232 17 1 5.7452 -6.2308 3.0314 18 6 1.4759 -1.8687 1.6110 19 6 1.9678 -0.7190 1.0825 20 1 -0.3634 0.3924 0.9498 21 1 -0.3635 0.6263 -0.8147 22 1 -0.3633 -1.0188 -0.1350 23 1 1.5630 1.9241 0.8332 24 1 1.7342 1.8621 -0.9372 25 1 3.9228 2.3435 0.0178 26 1 3.9488 0.6742 -0.6025 27 1 3.6516 1.5899 2.2932 28 1 4.9310 0.5620 1.5942 29 1 1.8779 -3.1196 4.5831 30 1 1.2981 -4.0497 3.1806 31 1 2.4745 -6.6283 5.5311 32 1 0.6101 -2.4111 1.2607 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261257120.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:54 Heat of formation + Delta-G solvation = 81.201686 kcal Electronic energy + Delta-G solvation = -14894.590856 eV Core-core repulsion = 12470.770006 eV Total energy + Delta-G solvation = -2423.820851 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.08155 -37.40097 -34.43416 -33.05049 -30.70342 -28.47015 -27.90775 -26.75390 -24.05899 -23.29899 -21.80291 -19.22856 -18.46282 -16.81239 -16.25275 -15.58682 -15.11255 -14.51573 -14.37871 -14.22007 -13.80906 -12.99700 -12.71475 -12.42139 -12.10820 -11.85340 -11.70546 -11.35378 -11.22820 -11.13939 -10.66672 -10.61912 -9.86176 -9.71106 -9.49577 -9.14107 -8.33594 -7.89483 -7.42154 -5.92778 -3.92866 2.49004 2.98172 3.40181 3.44950 3.50219 3.67971 3.87234 4.42071 4.56365 4.58955 4.86562 5.01360 5.22824 5.30336 5.38650 5.42668 5.44922 5.57794 5.76551 5.81034 5.94753 5.99139 6.32628 6.52698 6.73892 7.03666 7.50405 7.66287 7.71823 7.85482 8.05226 8.43315 8.77643 9.10995 9.69182 11.18527 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046405 B = 0.006793 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.236795 B = 4120.811619 C = 4497.135045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.468 5.468 3 C 0.046 3.954 4 C -0.138 4.138 5 C 0.136 3.864 6 N -0.405 5.405 7 N -0.294 5.294 8 C 0.131 3.869 9 C 0.088 3.912 10 C -0.501 4.501 11 H 0.058 0.942 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.896 3.104 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.292 4.292 19 C 0.244 3.756 20 H 0.038 0.962 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.046 0.954 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.261 0.739 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.355 15.108 -10.333 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.188 5.188 3 C -0.081 4.081 4 C -0.176 4.176 5 C 0.014 3.986 6 N -0.191 5.191 7 N -0.115 5.115 8 C -0.036 4.036 9 C 0.050 3.950 10 C -0.540 4.540 11 H 0.077 0.923 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.724 3.276 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.324 4.324 19 C 0.024 3.976 20 H 0.057 0.943 21 H 0.093 0.907 22 H 0.101 0.899 23 H 0.064 0.936 24 H 0.109 0.891 25 H 0.113 0.887 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.152 15.270 -10.048 18.316 hybrid contribution -0.049 -0.436 0.100 0.450 sum -1.201 14.834 -9.948 17.901 Atomic orbital electron populations 1.22470 0.84108 1.03908 1.01050 1.59246 1.09489 1.13174 1.36910 1.22245 0.95186 0.88444 1.02256 1.22098 0.95774 1.02986 0.96768 1.21676 0.96046 0.84553 0.96351 1.48846 1.23334 1.21685 1.25278 1.77471 1.24294 1.01608 1.08153 1.23198 0.89945 0.95479 0.94968 1.17841 0.98212 0.86196 0.92766 1.21083 0.98094 1.06518 1.28310 0.92344 1.24976 0.96504 0.97526 0.95489 1.69950 1.29488 1.23586 1.30828 0.86519 0.83583 0.79081 0.78397 1.20690 1.21258 1.19954 1.20794 1.07586 0.99964 1.04061 1.19394 0.91584 0.96480 0.90170 0.94290 0.90678 0.89873 0.93604 0.89107 0.88652 0.89705 0.90702 0.89218 0.94475 0.94257 0.92977 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.14 60.06 0.55 0.91 16 2 N -0.47 -6.66 5.00 -180.96 -0.90 -7.57 16 3 C 0.05 0.49 5.49 -3.68 -0.02 0.47 16 4 C -0.14 -1.41 6.16 -26.34 -0.16 -1.57 16 5 C 0.14 1.86 7.40 -3.62 -0.03 1.84 16 6 N -0.40 -7.89 4.05 -60.02 -0.24 -8.13 16 7 N -0.29 -7.13 12.57 33.71 0.42 -6.70 16 8 C 0.13 3.24 6.43 -82.30 -0.53 2.72 16 9 C 0.09 2.45 5.55 -29.03 -0.16 2.29 16 10 C -0.50 -14.98 9.07 -34.44 -0.31 -15.29 16 11 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 12 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 14 Si 0.90 22.60 29.54 -169.99 -5.02 17.58 16 15 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.27 -6.87 7.11 56.52 0.40 -6.46 16 18 C -0.29 -6.19 9.90 -39.83 -0.39 -6.58 16 19 C 0.24 4.55 6.49 -153.30 -0.99 3.55 16 20 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 21 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 22 H 0.08 0.96 7.43 -51.93 -0.39 0.58 16 23 H 0.05 0.49 8.11 -51.93 -0.42 0.06 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.04 1.09 8.12 -51.93 -0.42 0.67 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.14 2.67 7.53 -52.49 -0.40 2.28 16 LS Contribution 269.15 15.07 4.06 4.06 Total: -1.00 -34.29 269.15 -7.65 -41.94 By element: Atomic # 1 Polarization: 0.13 SS G_CDS: -4.54 Total: -4.42 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -2.15 Total: -10.13 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.01 Total: -49.02 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -34.29 -7.65 -41.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257120.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.137 kcal (2) G-P(sol) polarization free energy of solvation -34.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds