Wall clock time and date at job start Mon Mar 30 2020 02:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46964 * 111.06010 * 2 1 4 4 C 1.53202 * 109.72305 * 174.08664 * 3 2 1 5 5 C 1.53558 * 108.90394 * 292.47158 * 4 3 2 6 6 N 1.46749 * 107.80330 * 46.65863 * 5 4 3 7 7 N 1.39539 * 127.66462 * 164.73251 * 6 5 4 8 8 C 1.31042 * 108.24763 * 180.02562 * 7 6 5 9 9 C 1.50697 * 125.81972 * 180.02562 * 8 7 6 10 10 C 1.50707 * 109.46845 * 304.96789 * 9 8 7 11 11 H 1.07999 * 119.99866 * 0.02562 * 10 9 8 12 12 C 1.37871 * 119.99910 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00264 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99875 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47112 * 90.00428 * 14 12 10 16 16 H 1.48504 * 109.46940 * 209.99898 * 14 12 10 17 17 H 1.48495 * 109.47460 * 330.00317 * 14 12 10 18 18 C 1.39932 * 108.36413 * 359.97438 * 8 7 6 19 19 C 1.35539 * 124.23448 * 344.75894 * 6 5 4 20 20 H 1.09003 * 109.47421 * 292.44997 * 1 2 3 21 21 H 1.09002 * 109.47947 * 52.45089 * 1 2 3 22 22 H 1.08999 * 109.46956 * 172.44975 * 1 2 3 23 23 H 1.08994 * 109.27139 * 54.07700 * 3 2 1 24 24 H 1.09003 * 109.47294 * 294.22012 * 3 2 1 25 25 H 1.09001 * 109.56352 * 172.64861 * 4 3 2 26 26 H 1.08995 * 109.66010 * 52.35894 * 4 3 2 27 27 H 1.09001 * 109.78912 * 287.08310 * 5 4 3 28 28 H 1.08998 * 109.79110 * 166.24056 * 5 4 3 29 29 H 1.08994 * 109.47459 * 64.96670 * 9 8 7 30 30 H 1.09001 * 109.47259 * 184.97238 * 9 8 7 31 31 H 0.96998 * 120.00353 * 179.97438 * 13 12 10 32 32 H 1.08001 * 126.11667 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9970 1.3715 0.0000 4 6 3.5215 1.3385 0.1486 5 6 3.8736 0.8227 1.5514 6 7 3.0570 -0.3690 1.8094 7 7 3.2382 -1.3271 2.8076 8 6 2.2922 -2.2262 2.6899 9 6 2.1131 -3.4380 3.5676 10 6 3.3862 -4.2446 3.5762 11 1 4.2396 -3.9125 3.0037 12 6 3.4613 -5.4062 4.3149 13 7 2.4219 -5.8108 5.0117 14 14 5.0394 -6.4055 4.3261 15 1 5.9128 -5.9391 5.4329 16 1 4.7148 -7.8412 4.5232 17 1 5.7452 -6.2308 3.0314 18 6 1.4759 -1.8687 1.6110 19 6 1.9678 -0.7190 1.0825 20 1 -0.3634 0.3924 0.9498 21 1 -0.3635 0.6263 -0.8147 22 1 -0.3633 -1.0188 -0.1350 23 1 1.5630 1.9241 0.8332 24 1 1.7342 1.8621 -0.9372 25 1 3.9228 2.3435 0.0178 26 1 3.9488 0.6742 -0.6025 27 1 3.6516 1.5899 2.2932 28 1 4.9310 0.5620 1.5942 29 1 1.8779 -3.1196 4.5831 30 1 1.2981 -4.0497 3.1806 31 1 2.4745 -6.6283 5.5311 32 1 0.6101 -2.4111 1.2607 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261257120.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:54 Heat of formation + Delta-G solvation = 57.239789 kcal Electronic energy + Delta-G solvation = -14895.629922 eV Core-core repulsion = 12470.770006 eV Total energy + Delta-G solvation = -2424.859917 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.53974 -38.66058 -35.75152 -35.07733 -32.41908 -30.00953 -29.53398 -27.96768 -25.64429 -24.89919 -23.06588 -20.86794 -19.76266 -18.46786 -18.12794 -16.89984 -16.52525 -16.16312 -15.76532 -15.38433 -15.00482 -14.45273 -14.31356 -13.88936 -13.65225 -13.49390 -13.23430 -12.71624 -12.64717 -12.37645 -12.22760 -12.16814 -11.86553 -11.58145 -11.27510 -10.87321 -10.58736 -9.54712 -8.86938 -8.20176 -6.30150 1.00117 1.38397 1.41036 1.52182 1.61909 1.96668 2.43314 2.70135 3.11929 3.44594 3.68098 3.95437 4.06320 4.22167 4.35532 4.50401 4.55563 4.57574 4.65137 4.75552 4.83764 4.91470 4.97965 5.04953 5.26443 5.39602 5.46130 5.72049 5.83392 5.91204 6.19914 6.45278 6.77487 7.06239 7.36515 8.91295 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.046405 B = 0.006793 C = 0.006225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.236795 B = 4120.811619 C = 4497.135045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.472 5.472 3 C 0.039 3.961 4 C -0.127 4.127 5 C 0.117 3.883 6 N -0.402 5.402 7 N -0.337 5.337 8 C 0.103 3.897 9 C 0.098 3.902 10 C -0.524 4.524 11 H 0.045 0.955 12 C 0.006 3.994 13 N -0.928 5.928 14 Si 0.968 3.032 15 H -0.272 1.272 16 H -0.272 1.272 17 H -0.271 1.271 18 C -0.324 4.324 19 C 0.269 3.731 20 H 0.035 0.965 21 H 0.115 0.885 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.131 0.869 25 H 0.143 0.857 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.009 0.991 30 H 0.024 0.976 31 H 0.267 0.733 32 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.712 17.069 -12.305 21.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.193 5.193 3 C -0.087 4.087 4 C -0.166 4.166 5 C -0.003 4.003 6 N -0.189 5.189 7 N -0.160 5.160 8 C -0.063 4.063 9 C 0.060 3.940 10 C -0.563 4.563 11 H 0.064 0.936 12 C -0.192 4.192 13 N -0.568 5.568 14 Si 0.792 3.208 15 H -0.198 1.198 16 H -0.197 1.197 17 H -0.196 1.196 18 C -0.356 4.356 19 C 0.046 3.954 20 H 0.054 0.946 21 H 0.133 0.867 22 H 0.093 0.907 23 H 0.071 0.929 24 H 0.149 0.851 25 H 0.161 0.839 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.109 0.891 29 H 0.027 0.973 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.516 17.254 -12.026 21.038 hybrid contribution -0.269 -0.887 0.622 1.116 sum -0.785 16.367 -11.404 19.964 Atomic orbital electron populations 1.22603 0.82179 1.04467 1.02486 1.59350 1.11143 1.15151 1.33627 1.22544 0.95211 0.86237 1.04668 1.22173 0.95749 1.05109 0.93532 1.22276 0.95585 0.82915 0.99509 1.49209 1.24028 1.21822 1.23842 1.77268 1.24913 1.03014 1.10804 1.22766 0.91864 0.95322 0.96328 1.17497 0.97041 0.87537 0.91964 1.21271 0.98497 1.07600 1.28935 0.93645 1.25877 1.00248 0.98440 0.94671 1.70058 1.31525 1.24165 1.31101 0.85410 0.79013 0.77780 0.78579 1.19763 1.19721 1.19607 1.20845 1.08448 1.01907 1.04352 1.19636 0.90312 0.95664 0.89774 0.94582 0.86679 0.90696 0.92916 0.85135 0.83884 0.90644 0.88850 0.89142 0.97309 0.95751 0.92399 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 9.14 127.69 1.17 1.74 16 2 N -0.47 -12.09 5.00 -726.43 -3.63 -15.72 16 3 C 0.04 0.65 5.49 86.36 0.47 1.13 16 4 C -0.13 -2.07 6.16 30.85 0.19 -1.88 16 5 C 0.12 2.96 7.40 86.52 0.64 3.60 16 6 N -0.40 -15.49 4.05 -343.82 -1.39 -16.88 16 7 N -0.34 -16.92 12.57 -47.25 -0.59 -17.52 16 8 C 0.10 5.36 6.43 43.09 0.28 5.63 16 9 C 0.10 5.80 5.55 29.10 0.16 5.97 16 10 C -0.52 -32.76 9.07 25.60 0.23 -32.53 16 11 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 12 C 0.01 0.34 5.46 84.65 0.46 0.81 16 13 N -0.93 -58.00 13.29 21.44 0.28 -57.72 16 14 Si 0.97 47.03 29.54 68.60 2.03 49.06 16 15 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 16 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 17 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 18 C -0.32 -14.14 9.90 22.11 0.22 -13.92 16 19 C 0.27 9.84 6.49 131.25 0.85 10.69 16 20 H 0.04 0.75 8.12 -2.39 -0.02 0.73 16 21 H 0.11 1.39 8.11 -2.39 -0.02 1.38 16 22 H 0.07 1.62 7.43 -2.39 -0.02 1.60 16 23 H 0.05 0.87 8.11 -2.39 -0.02 0.85 16 24 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.02 1.46 8.12 -2.39 -0.02 1.44 16 31 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 32 H 0.15 5.91 7.53 -2.91 -0.02 5.89 16 Total: -1.00 -78.23 269.15 2.46 -75.77 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: 1.09 Total: 1.79 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: 4.67 Total: -18.78 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -5.33 Total: -107.84 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -78.23 2.46 -75.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261257120.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.015 kcal (2) G-P(sol) polarization free energy of solvation -78.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds