Wall clock time and date at job start Mon Mar 30 2020 02:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46978 * 110.99852 * 2 1 4 4 C 1.53406 * 109.65377 * 53.28002 * 3 2 1 5 5 N 1.46520 * 108.23390 * 49.67928 * 4 3 2 6 6 C 1.36046 * 128.66780 * 163.61694 * 5 4 3 7 7 C 1.34942 * 106.64056 * 180.16645 * 6 5 4 8 8 C 1.50701 * 125.95494 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.46490 * 125.00383 * 8 7 6 10 10 H 1.08002 * 120.00652 * 359.97438 * 9 8 7 11 11 C 1.37886 * 119.99623 * 180.02562 * 9 8 7 12 12 N 1.31507 * 120.00017 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 119.99961 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47435 * 89.99716 * 13 11 9 15 15 H 1.48499 * 109.47336 * 209.99474 * 13 11 9 16 16 H 1.48505 * 109.47273 * 329.99451 * 13 11 9 17 17 N 1.34370 * 108.09257 * 359.96653 * 7 6 5 18 18 C 1.29891 * 109.19696 * 359.94089 * 17 7 6 19 19 C 1.47320 * 110.99991 * 124.18244 * 2 1 3 20 20 H 1.08992 * 109.47459 * 60.00168 * 1 2 3 21 21 H 1.09004 * 109.47040 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47033 * 300.00271 * 1 2 3 23 23 H 1.09001 * 109.43929 * 173.33972 * 3 2 1 24 24 H 1.09004 * 109.43510 * 293.22241 * 3 2 1 25 25 H 1.08998 * 109.70821 * 169.36541 * 4 3 2 26 26 H 1.09004 * 109.71081 * 289.99272 * 4 3 2 27 27 H 1.07991 * 126.68165 * 0.12838 * 6 5 4 28 28 H 1.08992 * 109.47183 * 245.00578 * 8 7 6 29 29 H 1.09000 * 109.46718 * 5.00955 * 8 7 6 30 30 H 0.96995 * 120.00300 * 180.02562 * 12 11 9 31 31 H 1.09000 * 109.73988 * 45.75233 * 19 2 1 32 32 H 1.09003 * 109.73800 * 166.45459 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9957 1.3722 0.0000 4 6 1.3742 2.1634 1.1580 5 7 1.5095 1.3683 2.3812 6 6 1.3874 1.7713 3.6749 7 6 1.6022 0.6815 4.4411 8 6 1.5712 0.6386 5.9472 9 6 0.5961 -0.4176 6.3995 10 1 0.0528 -0.9993 5.6695 11 6 0.3967 -0.6406 7.7455 12 7 1.0578 0.0680 8.6344 13 14 -0.8115 -1.9502 8.3063 14 1 -0.1037 -3.2479 8.4497 15 1 -1.3952 -1.5577 9.6141 16 1 -1.8960 -2.0863 7.3010 17 7 1.8484 -0.3589 3.6271 18 6 1.7934 0.0420 2.3929 19 6 1.9970 -0.7727 1.1378 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 3.0789 1.3450 0.1192 24 1 1.7473 1.8560 -0.9446 25 1 1.8967 3.1126 1.2768 26 1 0.3193 2.3468 0.9535 27 1 1.1629 2.7692 4.0212 28 1 2.5656 0.4005 6.3244 29 1 1.2594 1.6096 6.3319 30 1 0.9178 -0.0891 9.5813 31 1 1.4606 -1.7179 1.2214 32 1 3.0601 -0.9638 0.9914 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261287962.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:27 Heat of formation + Delta-G solvation = 71.144910 kcal Electronic energy + Delta-G solvation = -14976.362400 eV Core-core repulsion = 12552.105455 eV Total energy + Delta-G solvation = -2424.256945 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.84714 -37.95712 -33.65676 -32.88047 -30.61666 -29.15299 -28.12278 -26.51350 -24.36773 -22.66615 -22.06452 -19.38641 -18.74017 -16.71574 -16.25197 -15.80772 -15.19025 -15.10624 -14.40331 -14.19548 -13.48703 -13.29837 -12.75059 -12.22422 -12.15249 -11.94782 -11.82103 -11.68829 -11.48922 -11.13474 -10.62070 -10.58742 -9.76712 -9.29418 -9.05993 -8.83060 -8.69997 -8.28167 -7.40250 -5.89194 -3.88587 2.61665 3.07847 3.40928 3.45825 3.50713 3.75844 3.97603 4.40943 4.58877 4.68613 4.72047 4.92070 5.14945 5.23784 5.36813 5.44335 5.48275 5.55756 5.60449 5.78272 5.79854 6.25393 6.47838 6.67023 6.71024 6.86575 7.53870 7.57463 7.78253 7.88215 8.08758 8.52174 8.95815 9.15728 9.73007 11.21960 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047228 B = 0.006807 C = 0.006352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.730251 B = 4112.597177 C = 4407.195259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.533 5.533 3 C 0.042 3.958 4 C 0.071 3.929 5 N -0.468 5.468 6 C -0.083 4.083 7 C 0.056 3.944 8 C 0.091 3.909 9 C -0.494 4.494 10 H 0.057 0.943 11 C 0.053 3.947 12 N -0.902 5.902 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.276 1.276 17 N -0.462 5.462 18 C 0.145 3.855 19 C 0.145 3.855 20 H 0.070 0.930 21 H 0.074 0.926 22 H 0.034 0.966 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.166 0.834 28 H 0.032 0.968 29 H 0.030 0.970 30 H 0.259 0.741 31 H 0.102 0.898 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.434 4.229 -18.041 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.255 5.255 3 C -0.087 4.087 4 C -0.054 4.054 5 N -0.155 5.155 6 C -0.212 4.212 7 C -0.073 4.073 8 C 0.053 3.947 9 C -0.533 4.533 10 H 0.075 0.925 11 C -0.147 4.147 12 N -0.542 5.542 13 Si 0.723 3.277 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.201 1.201 17 N -0.182 5.182 18 C -0.118 4.118 19 C 0.015 3.985 20 H 0.089 0.911 21 H 0.093 0.907 22 H 0.053 0.947 23 H 0.105 0.895 24 H 0.115 0.885 25 H 0.106 0.894 26 H 0.097 0.903 27 H 0.184 0.816 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.120 0.880 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.747 3.331 -18.154 18.472 hybrid contribution -1.189 0.756 0.979 1.716 sum -0.443 4.087 -17.176 17.661 Atomic orbital electron populations 1.22502 0.86851 1.03010 1.00930 1.62525 1.08835 1.12843 1.41289 1.22560 1.00700 0.88370 0.97089 1.22459 1.02492 0.96018 0.84456 1.45105 1.55202 1.09323 1.05894 1.22295 1.15358 1.01418 0.82133 1.21838 1.00145 0.87032 0.98241 1.17671 0.97892 0.97758 0.81341 1.21079 1.22578 1.18287 0.91328 0.92484 1.24994 0.96465 0.96484 0.96770 1.69951 1.42349 1.40800 1.01090 0.86542 0.81331 0.82075 0.77736 1.20655 1.21377 1.20072 1.69957 1.18852 1.30976 0.98408 1.24101 1.07982 0.83078 0.96637 1.20809 1.02056 0.95114 0.80517 0.91135 0.90736 0.94715 0.89533 0.88459 0.89363 0.90300 0.81638 0.95000 0.95211 0.93100 0.87955 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 8.88 60.07 0.53 0.70 16 2 N -0.53 -6.06 5.22 -243.47 -1.27 -7.33 16 3 C 0.04 0.40 5.99 -3.57 -0.02 0.38 16 4 C 0.07 0.80 6.27 -3.82 -0.02 0.78 16 5 N -0.47 -7.92 2.88 -113.70 -0.33 -8.25 16 6 C -0.08 -1.66 11.57 -16.85 -0.19 -1.85 16 7 C 0.06 1.37 6.30 -82.65 -0.52 0.85 16 8 C 0.09 2.54 5.54 -29.04 -0.16 2.38 16 9 C -0.49 -14.92 9.08 -34.44 -0.31 -15.23 16 10 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 11 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -27.81 13.29 55.43 0.74 -27.07 16 13 Si 0.89 22.79 29.54 -169.99 -5.02 17.77 16 14 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 16 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 17 N -0.46 -10.96 11.22 -6.84 -0.08 -11.04 16 18 C 0.14 2.70 7.13 -155.22 -1.11 1.60 16 19 C 0.14 2.01 6.20 -4.59 -0.03 1.98 16 20 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.07 0.78 8.02 -51.93 -0.42 0.37 16 22 H 0.03 0.45 5.87 -51.93 -0.30 0.15 16 23 H 0.09 0.83 8.07 -51.93 -0.42 0.41 16 24 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.08 0.83 6.99 -51.93 -0.36 0.47 16 27 H 0.17 2.88 8.06 -52.49 -0.42 2.46 16 28 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.10 1.39 7.95 -51.93 -0.41 0.98 16 32 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 265.70 15.07 4.00 4.00 Total: -1.00 -34.53 265.70 -8.30 -42.83 By element: Atomic # 1 Polarization: 0.44 SS G_CDS: -4.41 Total: -3.98 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.93 Total: -6.95 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.94 Total: -53.68 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.53 -8.30 -42.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261287962.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.977 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds