Wall clock time and date at job start Mon Mar 30 2020 02:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46934 * 111.00274 * 2 1 4 4 C 1.53427 * 109.88208 * 52.91904 * 3 2 1 5 5 N 1.46533 * 108.13345 * 50.07541 * 4 3 2 6 6 C 1.34132 * 129.34276 * 163.32751 * 5 4 3 7 7 N 1.30877 * 108.50905 * 180.30357 * 6 5 4 8 8 C 1.34505 * 109.33313 * 359.90482 * 7 6 5 9 9 C 1.50697 * 126.09853 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47119 * 89.97852 * 9 8 7 11 11 H 1.07998 * 119.99828 * 359.97438 * 10 9 8 12 12 C 1.37881 * 120.00347 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99411 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 120.00355 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47451 * 89.99481 * 14 12 10 16 16 H 1.48498 * 109.47110 * 209.99842 * 14 12 10 17 17 H 1.48507 * 109.47013 * 329.99631 * 14 12 10 18 18 C 1.33655 * 107.79310 * 0.02562 * 8 7 6 19 19 C 1.47429 * 110.99815 * 124.28403 * 2 1 3 20 20 H 1.09003 * 109.47154 * 295.71744 * 1 2 3 21 21 H 1.09008 * 109.47001 * 55.71785 * 1 2 3 22 22 H 1.09004 * 109.47636 * 175.71645 * 1 2 3 23 23 H 1.09003 * 109.40377 * 173.04597 * 3 2 1 24 24 H 1.09006 * 109.40298 * 292.87546 * 3 2 1 25 25 H 1.08996 * 109.73040 * 169.73590 * 4 3 2 26 26 H 1.09002 * 109.73177 * 290.36989 * 4 3 2 27 27 H 1.07992 * 125.74966 * 0.32693 * 6 5 4 28 28 H 1.09004 * 109.47258 * 209.97692 * 9 8 7 29 29 H 1.09001 * 109.47748 * 329.97708 * 9 8 7 30 30 H 0.97004 * 119.99604 * 179.97438 * 13 12 10 31 31 H 1.09000 * 109.76951 * 166.31306 * 19 2 1 32 32 H 1.09000 * 109.81375 * 45.55759 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3717 0.0000 4 6 1.3704 2.1706 1.1511 5 7 1.5077 1.3838 2.3796 6 6 1.3937 1.7755 3.6574 7 7 1.6016 0.7394 4.4296 8 6 1.8515 -0.3406 3.6679 9 6 2.1415 -1.7322 4.1684 10 6 0.8498 -2.4960 4.3058 11 1 -0.0875 -2.0211 4.0561 12 6 0.8643 -3.8008 4.7513 13 7 2.0057 -4.3788 5.0559 14 14 -0.7368 -4.7478 4.9209 15 1 -1.0353 -5.4480 3.6458 16 1 -0.6091 -5.7441 6.0147 17 1 -1.8389 -3.8041 5.2372 18 6 1.7967 0.0406 2.3881 19 6 1.9972 -0.7753 1.1372 20 1 -0.3633 0.4459 0.9259 21 1 -0.3633 0.5789 -0.8492 22 1 -0.3634 -1.0248 -0.0768 23 1 3.0781 1.3440 0.1245 24 1 1.7522 1.8530 -0.9473 25 1 1.8902 3.1221 1.2634 26 1 0.3154 2.3500 0.9441 27 1 1.1679 2.7769 3.9926 28 1 2.7931 -2.2445 3.4604 29 1 2.6342 -1.6740 5.1390 30 1 2.0160 -5.2967 5.3696 31 1 3.0598 -0.9686 0.9898 32 1 1.4593 -1.7195 1.2224 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261288981.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:31 Heat of formation + Delta-G solvation = 46.570865 kcal Electronic energy + Delta-G solvation = -15294.312761 eV Core-core repulsion = 12868.990205 eV Total energy + Delta-G solvation = -2425.322556 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.27272 -38.92633 -35.71215 -34.32969 -32.08032 -31.12026 -29.07352 -27.48263 -25.52909 -25.01284 -23.04639 -21.09012 -19.89235 -18.53770 -17.81354 -16.97827 -16.51952 -16.24872 -15.99104 -15.48558 -14.85374 -14.56250 -14.26083 -13.96659 -13.58175 -13.27842 -13.12001 -12.84426 -12.67155 -12.57612 -12.50004 -12.26511 -11.83935 -11.56165 -10.78967 -10.55886 -10.24247 -9.52217 -9.05969 -8.16782 -6.29546 1.18519 1.37646 1.40105 1.51152 1.91648 2.27072 2.47900 2.91911 3.12332 3.61214 3.81607 3.92609 4.00732 4.05196 4.36052 4.38888 4.49385 4.61007 4.73858 4.79312 4.83401 4.89705 4.98167 5.27965 5.36183 5.56538 5.73816 5.87163 5.88841 5.98523 6.24761 6.51578 6.79257 7.32866 7.37597 8.92407 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034113 B = 0.008737 C = 0.007893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.611325 B = 3204.116571 C = 3546.704867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.535 5.535 3 C 0.041 3.959 4 C 0.065 3.935 5 N -0.459 5.459 6 C 0.184 3.816 7 N -0.549 5.549 8 C 0.018 3.982 9 C 0.106 3.894 10 C -0.518 4.518 11 H 0.041 0.959 12 C 0.005 3.995 13 N -0.929 5.929 14 Si 0.966 3.034 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.274 1.274 18 C -0.075 4.075 19 C 0.141 3.859 20 H 0.012 0.988 21 H 0.101 0.899 22 H 0.060 0.940 23 H 0.081 0.919 24 H 0.133 0.867 25 H 0.125 0.875 26 H 0.097 0.903 27 H 0.243 0.757 28 H 0.014 0.986 29 H -0.012 1.012 30 H 0.266 0.734 31 H 0.091 0.909 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.459 13.974 -13.350 19.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.256 5.256 3 C -0.087 4.087 4 C -0.057 4.057 5 N -0.144 5.144 6 C -0.098 4.098 7 N -0.270 5.270 8 C -0.109 4.109 9 C 0.068 3.932 10 C -0.556 4.556 11 H 0.059 0.941 12 C -0.193 4.193 13 N -0.569 5.569 14 Si 0.790 3.210 15 H -0.190 1.190 16 H -0.202 1.202 17 H -0.199 1.199 18 C -0.189 4.189 19 C 0.011 3.989 20 H 0.030 0.970 21 H 0.120 0.880 22 H 0.079 0.921 23 H 0.100 0.900 24 H 0.151 0.849 25 H 0.143 0.857 26 H 0.115 0.885 27 H 0.259 0.741 28 H 0.032 0.968 29 H 0.007 0.993 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.266 13.700 -13.029 19.042 hybrid contribution -0.799 -0.366 0.738 1.148 sum -3.065 13.334 -12.291 18.392 Atomic orbital electron populations 1.22452 0.86600 1.02800 1.00681 1.62465 1.08972 1.13869 1.40313 1.22737 1.00380 0.87101 0.98518 1.22955 1.04218 0.96437 0.82080 1.45430 1.53135 1.07699 1.08172 1.25429 1.04502 1.00802 0.79069 1.70373 1.21441 0.99669 1.35476 1.20749 1.04450 0.95489 0.90253 1.17256 0.95884 0.85920 0.94121 1.21183 0.92726 0.97308 1.44388 0.94084 1.25890 1.00088 0.98479 0.94795 1.70081 1.27176 1.13823 1.45796 0.85446 0.79068 0.78089 0.78414 1.19000 1.20235 1.19861 1.21563 1.13120 0.86214 0.97982 1.20713 1.01299 0.94823 0.82020 0.96953 0.88033 0.92062 0.90030 0.84880 0.85667 0.88515 0.74138 0.96776 0.99331 0.92522 0.89109 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 8.75 127.69 1.12 1.66 16 2 N -0.53 -13.70 5.22 -924.64 -4.82 -18.52 16 3 C 0.04 0.73 5.96 86.44 0.52 1.25 16 4 C 0.07 1.18 6.30 86.52 0.54 1.72 16 5 N -0.46 -14.24 2.87 -514.65 -1.48 -15.72 16 6 C 0.18 6.29 12.70 180.44 2.29 8.58 16 7 N -0.55 -26.10 11.28 -189.20 -2.13 -28.23 16 8 C 0.02 0.91 6.28 41.11 0.26 1.17 16 9 C 0.11 6.28 5.38 29.10 0.16 6.43 16 10 C -0.52 -31.80 9.09 25.60 0.23 -31.57 16 11 H 0.04 2.54 7.74 -2.91 -0.02 2.52 16 12 C 0.01 0.33 5.46 84.66 0.46 0.79 16 13 N -0.93 -58.13 13.29 21.45 0.28 -57.84 16 14 Si 0.97 46.36 29.54 68.60 2.03 48.38 16 15 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 17 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 18 C -0.07 -2.99 5.96 40.64 0.24 -2.75 16 19 C 0.14 4.92 5.93 85.45 0.51 5.43 16 20 H 0.01 0.33 6.03 -2.39 -0.01 0.32 16 21 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 22 H 0.06 1.62 8.11 -2.38 -0.02 1.60 16 23 H 0.08 1.54 8.07 -2.39 -0.02 1.52 16 24 H 0.13 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.10 1.50 7.08 -2.39 -0.02 1.48 16 27 H 0.24 5.45 8.06 -2.91 -0.02 5.42 16 28 H 0.01 0.84 8.05 -2.38 -0.02 0.82 16 29 H -0.01 -0.77 8.14 -2.39 -0.02 -0.78 16 30 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 31 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.08 3.11 8.01 -2.39 -0.02 3.09 16 Total: -1.00 -77.97 265.47 1.30 -76.67 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: 1.10 Total: 2.55 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: 6.33 Total: -7.29 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -8.15 Total: -120.31 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -77.97 1.30 -76.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261288981.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.238 kcal (2) G-P(sol) polarization free energy of solvation -77.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds