Wall clock time and date at job start Mon Mar 30 2020 03:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00142 * 2 1 4 4 H 1.48500 * 109.47142 * 85.19987 * 3 2 1 5 5 H 1.48496 * 109.47639 * 325.19671 * 3 2 1 6 6 H 1.48508 * 109.47335 * 205.19179 * 3 2 1 7 7 C 1.37877 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00264 * 173.67144 * 7 2 1 9 9 C 1.50697 * 119.99961 * 353.66975 * 7 2 1 10 10 H 1.08995 * 110.28219 * 53.86412 * 9 7 2 11 11 C 1.54599 * 110.30649 * 291.66711 * 9 7 2 12 12 C 1.54944 * 102.92214 * 219.12415 * 11 9 7 13 13 N 1.48532 * 103.22313 * 37.41938 * 12 11 9 14 14 C 1.46897 * 110.99914 * 200.27553 * 13 12 11 15 15 H 1.09003 * 109.35525 * 67.39463 * 14 13 12 16 16 C 1.50066 * 109.36339 * 187.11929 * 14 13 12 17 17 C 1.29252 * 124.22482 * 137.49000 * 16 14 13 18 18 C 1.50073 * 124.01269 * 359.26811 * 17 16 14 19 19 C 1.53025 * 110.14933 * 17.26660 * 18 17 16 20 20 C 1.53028 * 109.35856 * 307.67458 * 14 13 12 21 21 C 1.47902 * 105.82223 * 320.79021 * 13 12 11 22 22 H 0.97004 * 119.99614 * 359.97438 * 1 2 3 23 23 H 1.08994 * 110.72602 * 337.48813 * 11 9 7 24 24 H 1.09005 * 110.72263 * 100.77041 * 11 9 7 25 25 H 1.08995 * 110.67017 * 278.98249 * 12 11 9 26 26 H 1.09003 * 110.66120 * 155.85024 * 12 11 9 27 27 H 1.08001 * 117.95612 * 317.31786 * 16 14 13 28 28 H 1.07996 * 118.01994 * 179.38201 * 17 16 14 29 29 H 1.09006 * 109.35921 * 257.05658 * 18 17 16 30 30 H 1.09004 * 109.35419 * 137.47306 * 18 17 16 31 31 H 1.08992 * 109.64143 * 190.88061 * 19 18 17 32 32 H 1.08993 * 109.64049 * 70.24336 * 19 18 17 33 33 H 1.08997 * 109.63904 * 310.03743 * 20 14 13 34 34 H 1.09003 * 109.64194 * 70.45806 * 20 14 13 35 35 H 1.09004 * 109.91886 * 265.98154 * 21 13 12 36 36 H 1.08993 * 110.08316 * 144.77687 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3952 2.1049 1.3952 5 1 1.5012 2.6213 -0.7991 6 1 3.5939 1.4129 -0.5960 7 6 2.0045 -1.1941 -0.0005 8 1 3.0795 -1.1970 -0.1036 9 6 1.2578 -2.4952 0.1428 10 1 0.4713 -2.5642 -0.6086 11 6 0.6585 -2.6163 1.5627 12 6 0.8715 -4.1130 1.9023 13 7 2.1955 -4.4130 1.2996 14 6 2.3640 -5.8574 1.0914 15 1 1.6688 -6.1951 0.3228 16 6 3.7701 -6.1353 0.6471 17 6 4.4904 -7.1154 1.0845 18 6 4.0256 -8.1055 2.1120 19 6 2.5012 -8.0595 2.2367 20 6 2.0718 -6.5958 2.3995 21 6 2.2271 -3.6848 0.0127 22 1 -0.4850 0.8401 0.0004 23 1 1.1983 -1.9808 2.2647 24 1 -0.4033 -2.3698 1.5555 25 1 0.0936 -4.7254 1.4464 26 1 0.8973 -4.2626 2.9817 27 1 4.2087 -5.4761 -0.0874 28 1 5.4886 -7.2279 0.6878 29 1 4.4745 -7.8640 3.0755 30 1 4.3336 -9.1076 1.8132 31 1 2.1875 -8.6325 3.1091 32 1 2.0473 -8.4766 1.3379 33 1 2.6344 -6.1372 3.2126 34 1 1.0051 -6.5458 2.6181 35 1 1.9021 -4.3420 -0.7940 36 1 3.2352 -3.3221 -0.1875 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306610015.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:27 Heat of formation + Delta-G solvation = -10.550740 kcal Electronic energy + Delta-G solvation = -15311.409673 eV Core-core repulsion = 12987.150482 eV Total energy + Delta-G solvation = -2324.259191 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.52751 -38.20210 -34.97982 -32.60043 -32.07346 -29.92949 -29.07017 -26.29508 -23.83937 -23.18912 -21.52861 -21.04393 -18.91822 -18.41037 -17.54458 -16.53998 -16.25618 -15.91773 -14.86781 -14.82932 -14.43412 -14.12091 -13.69892 -13.61038 -13.41127 -13.15047 -13.05479 -12.73331 -12.53476 -12.44367 -12.09393 -11.82572 -11.58489 -11.46624 -11.13750 -10.93398 -10.85240 -10.51038 -9.98537 -9.20034 -8.15058 -6.22280 1.40252 1.40880 1.41657 1.52057 2.43068 3.15341 3.22863 3.74310 3.92980 4.08215 4.16512 4.31460 4.35756 4.47422 4.48016 4.55467 4.56018 4.68864 4.78599 4.89683 4.99327 5.03409 5.06262 5.14976 5.20517 5.31427 5.34169 5.45781 5.55591 5.68686 5.79941 5.82501 6.02641 6.17051 6.33025 6.40324 6.85755 7.43845 8.95472 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.053824 B = 0.006420 C = 0.006006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.086366 B = 4360.363692 C = 4660.836235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.525 4.525 8 H 0.051 0.949 9 C 0.030 3.970 10 H 0.002 0.998 11 C -0.092 4.092 12 C 0.046 3.954 13 N -0.516 5.516 14 C 0.103 3.897 15 H 0.036 0.964 16 C -0.158 4.158 17 C -0.146 4.146 18 C -0.090 4.090 19 C -0.114 4.114 20 C -0.110 4.110 21 C 0.060 3.940 22 H 0.261 0.739 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.025 0.975 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.131 -15.290 4.752 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.563 4.563 8 H 0.070 0.930 9 C 0.011 3.989 10 H 0.020 0.980 11 C -0.131 4.131 12 C -0.081 4.081 13 N -0.241 5.241 14 C -0.005 4.005 15 H 0.054 0.946 16 C -0.176 4.176 17 C -0.164 4.164 18 C -0.126 4.126 19 C -0.152 4.152 20 C -0.148 4.148 21 C -0.068 4.068 22 H 0.070 0.930 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.414 -15.012 5.074 16.745 hybrid contribution -0.464 1.177 -0.970 1.594 sum 4.950 -13.835 4.104 15.256 Atomic orbital electron populations 1.70088 1.07304 1.27318 1.51454 1.25746 0.95630 1.02436 0.94756 0.85599 0.78833 0.79445 0.78139 1.20151 1.20807 1.19264 1.21484 0.93186 0.91827 1.49783 0.93045 1.19491 0.93279 0.92819 0.93329 0.97994 1.22272 0.98502 0.94045 0.98247 1.23175 0.89417 0.95726 0.99780 1.64805 1.30455 1.07239 1.21567 1.20733 0.94615 0.87756 0.97378 0.94635 1.21859 0.95889 0.98658 1.01242 1.22213 0.99419 0.96411 0.98404 1.20526 0.95579 0.98525 0.97995 1.21603 0.95884 0.94982 1.02698 1.21674 1.01314 0.95971 0.95829 1.22785 0.99780 0.94688 0.89547 0.93001 0.94065 0.94136 0.94201 0.89466 0.89593 0.86703 0.90130 0.89181 0.89485 0.91943 0.91521 0.91532 0.95686 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.96 13.01 21.45 0.28 -54.68 16 2 C 0.01 0.73 5.33 84.66 0.45 1.19 16 3 Si 0.95 44.82 29.54 68.60 2.03 46.84 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.52 -30.04 8.32 25.60 0.21 -29.82 16 8 H 0.05 2.93 7.36 -2.91 -0.02 2.91 16 9 C 0.03 1.57 2.77 -10.66 -0.03 1.54 16 10 H 0.00 0.11 8.12 -2.39 -0.02 0.09 16 11 C -0.09 -4.44 6.18 31.80 0.20 -4.24 16 12 C 0.05 1.78 5.19 86.65 0.45 2.23 16 13 N -0.52 -20.14 5.09 -863.34 -4.40 -24.54 16 14 C 0.10 3.26 2.01 43.98 0.09 3.35 16 15 H 0.04 1.18 7.81 -2.39 -0.02 1.16 16 16 C -0.16 -4.66 8.99 27.22 0.24 -4.42 16 17 C -0.15 -3.39 9.80 27.22 0.27 -3.12 16 18 C -0.09 -1.61 6.11 29.66 0.18 -1.43 16 19 C -0.11 -2.15 6.01 30.73 0.18 -1.97 16 20 C -0.11 -2.77 4.62 30.74 0.14 -2.63 16 21 C 0.06 2.67 5.53 86.45 0.48 3.14 16 22 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 23 H 0.04 2.11 7.86 -2.39 -0.02 2.09 16 24 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 25 H 0.04 1.44 8.00 -2.39 -0.02 1.42 16 26 H 0.09 2.96 7.85 -2.39 -0.02 2.94 16 27 H 0.09 2.78 7.55 -2.91 -0.02 2.75 16 28 H 0.12 2.31 8.06 -2.91 -0.02 2.29 16 29 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.19 8.12 -2.39 -0.02 1.17 16 33 H 0.07 1.78 8.12 -2.39 -0.02 1.76 16 34 H 0.07 1.61 7.40 -2.39 -0.02 1.60 16 35 H 0.02 1.06 7.57 -2.38 -0.02 1.04 16 36 H 0.06 2.71 7.34 -2.39 -0.02 2.69 16 Total: -1.00 -62.33 281.84 1.79 -60.54 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.02 Total: 8.03 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 2.87 Total: -36.20 kcal Atomic # 7 Polarization: -75.10 SS G_CDS: -4.12 Total: -79.22 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -62.33 1.79 -60.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306610015.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.990 kcal (2) G-P(sol) polarization free energy of solvation -62.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds