Wall clock time and date at job start Mon Mar 30 2020 03:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00063 * 2 1 4 4 H 1.48506 * 109.47553 * 270.00037 * 3 2 1 5 5 H 1.48502 * 109.47540 * 30.00473 * 3 2 1 6 6 H 1.48502 * 109.47310 * 149.99959 * 3 2 1 7 7 C 1.37874 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00015 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00273 * 359.97438 * 7 2 1 10 10 H 1.09001 * 110.35621 * 302.14981 * 9 7 2 11 11 C 1.54604 * 110.30636 * 64.28560 * 9 7 2 12 12 C 1.54940 * 102.91923 * 140.87331 * 11 9 7 13 13 N 1.48530 * 103.22772 * 322.58912 * 12 11 9 14 14 C 1.46906 * 110.99918 * 159.72252 * 13 12 11 15 15 H 1.08993 * 109.35756 * 182.87725 * 14 13 12 16 16 C 1.50069 * 109.35573 * 302.60401 * 14 13 12 17 17 C 1.29432 * 124.07803 * 137.36663 * 16 14 13 18 18 C 1.50074 * 124.07690 * 359.49978 * 17 16 14 19 19 C 1.53018 * 110.14292 * 17.13220 * 18 17 16 20 20 C 1.53022 * 109.35790 * 63.29004 * 14 13 12 21 21 C 1.47899 * 105.82565 * 39.20791 * 13 12 11 22 22 H 0.97010 * 120.00168 * 359.97438 * 1 2 3 23 23 H 1.09002 * 110.72257 * 259.23292 * 11 9 7 24 24 H 1.08997 * 110.72010 * 22.33798 * 11 9 7 25 25 H 1.09002 * 110.66363 * 204.14979 * 12 11 9 26 26 H 1.09004 * 110.66357 * 81.02699 * 12 11 9 27 27 H 1.08004 * 117.95923 * 317.33220 * 16 14 13 28 28 H 1.07997 * 117.96467 * 179.48354 * 17 16 14 29 29 H 1.08995 * 109.35989 * 137.34407 * 18 17 16 30 30 H 1.09003 * 109.35491 * 257.06472 * 18 17 16 31 31 H 1.09004 * 109.64382 * 70.25042 * 19 18 17 32 32 H 1.09003 * 109.64476 * 190.66603 * 19 18 17 33 33 H 1.09006 * 109.64120 * 310.03898 * 20 14 13 34 34 H 1.08994 * 109.64714 * 70.67284 * 20 14 13 35 35 H 1.08997 * 109.91760 * 94.02263 * 21 13 12 36 36 H 1.08995 * 109.91931 * 215.32172 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.5908 -2.5558 0.8649 11 6 0.4374 -2.6489 -1.3066 12 6 0.6021 -4.1515 -1.6469 13 7 2.0055 -4.4373 -1.2532 14 6 2.2115 -5.8771 -1.0467 15 1 3.2334 -6.0512 -0.7100 16 6 1.2529 -6.3721 -0.0036 17 6 0.5952 -7.4834 -0.0919 18 6 0.6913 -8.4271 -1.2549 19 6 1.9445 -8.1228 -2.0784 20 6 1.9823 -6.6167 -2.3665 21 6 2.2345 -3.6842 -0.0011 22 1 -0.4851 0.8401 0.0004 23 1 -0.6114 -2.4043 -1.1379 24 1 0.8558 -2.0239 -2.0954 25 1 0.4594 -4.3221 -2.7140 26 1 -0.0920 -4.7564 -1.0634 27 1 1.1028 -5.7634 0.8759 28 1 -0.0634 -7.7482 0.7219 29 1 0.7413 -9.4514 -0.8858 30 1 -0.1900 -8.3132 -1.8862 31 1 2.8321 -8.4100 -1.5146 32 1 1.9107 -8.6777 -3.0159 33 1 1.0337 -6.3032 -2.8023 34 1 2.7967 -6.3961 -3.0565 35 1 2.0429 -4.3261 0.8587 36 1 3.2598 -3.3157 0.0283 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306610017.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:32 Heat of formation + Delta-G solvation = 9.385974 kcal Electronic energy + Delta-G solvation = -15468.017316 eV Core-core repulsion = 13144.622646 eV Total energy + Delta-G solvation = -2323.394670 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.39028 -36.57837 -33.02248 -30.96812 -30.84872 -28.17935 -27.56109 -24.34313 -22.54467 -22.03493 -20.11492 -19.25373 -17.45664 -16.37384 -16.33758 -14.90792 -14.42438 -14.26316 -13.90321 -13.30888 -12.86842 -12.71018 -12.50509 -12.39972 -11.73711 -11.57866 -11.21811 -10.97199 -10.80216 -10.59468 -10.51033 -10.31686 -10.20495 -9.97387 -9.59778 -9.21168 -8.87642 -8.69946 -8.35681 -7.60806 -5.96995 -3.98562 2.45995 3.34502 3.40799 3.44269 4.48250 4.65321 4.87321 4.93237 5.18463 5.35031 5.39320 5.47449 5.60419 5.72767 5.77251 5.89477 5.92824 6.00482 6.08683 6.19706 6.26964 6.35195 6.44640 6.55421 6.65684 6.79550 6.94622 7.08226 7.19380 7.27513 7.53724 7.70711 7.88098 7.95713 8.08214 8.49654 9.02998 9.64618 11.13164 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.063637 B = 0.006412 C = 0.006315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.888132 B = 4365.925826 C = 4433.101406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.028 0.972 11 C -0.092 4.092 12 C 0.029 3.971 13 N -0.506 5.506 14 C 0.102 3.898 15 H 0.082 0.918 16 C -0.171 4.171 17 C -0.162 4.162 18 C -0.088 4.088 19 C -0.119 4.119 20 C -0.109 4.109 21 C 0.039 3.961 22 H 0.259 0.741 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.107 0.893 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.342 -13.933 -2.714 14.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.046 0.954 11 C -0.131 4.131 12 C -0.098 4.098 13 N -0.228 5.228 14 C -0.007 4.007 15 H 0.100 0.900 16 C -0.191 4.191 17 C -0.181 4.181 18 C -0.125 4.125 19 C -0.157 4.157 20 C -0.147 4.147 21 C -0.088 4.088 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.124 0.876 28 H 0.114 0.886 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.574 -13.627 -3.114 14.066 hybrid contribution -0.246 0.691 0.812 1.094 sum 1.328 -12.935 -2.302 13.206 Atomic orbital electron populations 1.69971 1.05902 1.26389 1.50832 1.24979 0.94838 0.99039 0.95248 0.86619 0.79850 0.83594 0.78070 1.20716 1.21389 1.19956 1.21190 0.92720 0.90224 1.50301 0.92515 1.19473 0.92466 0.91920 0.93934 0.95410 1.22402 1.00114 0.90749 0.99809 1.23336 0.88562 0.99037 0.98878 1.65032 1.23370 1.04083 1.30327 1.20740 0.97581 0.89491 0.92877 0.90019 1.22943 0.98733 0.96923 1.00483 1.21963 1.00704 0.96582 0.98896 1.20428 0.98447 0.98037 0.95591 1.21605 0.97899 0.96620 0.99554 1.21607 1.02564 0.93627 0.96882 1.23148 1.01712 0.95382 0.88579 0.93154 0.92502 0.92117 0.92086 0.94783 0.87561 0.88582 0.91632 0.91248 0.91966 0.91862 0.91491 0.91289 0.95616 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 12.62 55.43 0.70 -25.26 16 2 C 0.06 1.69 5.34 -17.82 -0.10 1.60 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.10 8.37 -34.44 -0.29 -14.38 16 8 H 0.06 1.57 7.34 -52.48 -0.39 1.18 16 9 C 0.04 1.04 2.87 -90.41 -0.26 0.78 16 10 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 11 C -0.09 -2.21 5.75 -24.86 -0.14 -2.35 16 12 C 0.03 0.58 5.39 -1.90 -0.01 0.57 16 13 N -0.51 -9.89 5.29 -224.24 -1.19 -11.08 16 14 C 0.10 1.64 2.55 -69.16 -0.18 1.46 16 15 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.17 -2.66 6.91 -35.90 -0.25 -2.90 16 17 C -0.16 -2.17 9.80 -35.89 -0.35 -2.52 16 18 C -0.09 -0.99 6.12 -28.18 -0.17 -1.16 16 19 C -0.12 -1.33 6.01 -26.52 -0.16 -1.49 16 20 C -0.11 -1.50 5.40 -26.52 -0.14 -1.64 16 21 C 0.04 0.84 6.10 -2.75 -0.02 0.82 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.06 1.42 8.12 -51.93 -0.42 1.00 16 24 H 0.06 1.56 7.85 -51.93 -0.41 1.16 16 25 H 0.06 1.13 7.43 -51.93 -0.39 0.75 16 26 H 0.03 0.66 6.60 -51.93 -0.34 0.32 16 27 H 0.11 1.80 6.20 -52.48 -0.33 1.47 16 28 H 0.10 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.68 8.12 -51.93 -0.42 0.26 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.97 6.56 -51.93 -0.34 0.63 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.03 0.52 5.64 -51.93 -0.29 0.23 16 36 H 0.07 1.55 7.39 -51.93 -0.38 1.16 16 LS Contribution 275.87 15.07 4.16 4.16 Total: -1.00 -28.46 275.87 -9.22 -37.68 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -5.80 Total: -0.87 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: -2.06 Total: -21.21 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.49 Total: -36.34 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.46 -9.22 -37.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306610017.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.062 kcal (2) G-P(sol) polarization free energy of solvation -28.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds