Wall clock time and date at job start Mon Mar 30 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00430 * 2 1 4 4 H 1.48502 * 109.46971 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47052 * 300.00131 * 3 2 1 6 6 H 1.48500 * 109.47085 * 60.00214 * 3 2 1 7 7 C 1.37882 * 119.99266 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99459 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00171 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.62703 * 56.90354 * 9 7 2 11 11 C 1.55422 * 110.69674 * 293.62500 * 9 7 2 12 12 C 1.54908 * 101.52379 * 205.97506 * 11 9 7 13 13 N 1.47846 * 104.89238 * 37.06612 * 12 11 9 14 14 C 1.46900 * 111.00020 * 213.57993 * 13 12 11 15 15 H 1.08996 * 109.35636 * 300.15168 * 14 13 12 16 16 C 1.50063 * 109.35668 * 180.55917 * 14 13 12 17 17 C 1.29441 * 124.07434 * 222.65906 * 16 14 13 18 18 C 1.50065 * 124.07852 * 0.47895 * 17 16 14 19 19 C 1.53024 * 110.14432 * 342.86313 * 18 17 16 20 20 C 1.53029 * 109.35429 * 59.87290 * 14 13 12 21 21 C 1.47448 * 108.56553 * 335.84749 * 13 12 11 22 22 H 0.97005 * 119.99569 * 359.97438 * 1 2 3 23 23 H 1.08998 * 111.10859 * 87.90659 * 11 9 7 24 24 H 1.08998 * 111.00401 * 323.99777 * 11 9 7 25 25 H 1.09002 * 110.37460 * 278.18013 * 12 11 9 26 26 H 1.08999 * 110.37548 * 155.95084 * 12 11 9 27 27 H 1.07995 * 117.96405 * 42.64663 * 16 14 13 28 28 H 1.08007 * 117.96323 * 180.49775 * 17 16 14 29 29 H 1.09001 * 109.35730 * 222.65613 * 18 17 16 30 30 H 1.08996 * 109.36043 * 103.07517 * 18 17 16 31 31 H 1.09000 * 109.64371 * 289.75022 * 19 18 17 32 32 H 1.09004 * 109.63798 * 169.12376 * 19 18 17 33 33 H 1.08994 * 109.64391 * 289.32498 * 20 14 13 34 34 H 1.09000 * 109.64407 * 49.74709 * 20 14 13 35 35 H 1.08999 * 109.88737 * 120.39623 * 21 13 12 36 36 H 1.09000 * 109.88899 * 241.58505 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 1 0.5760 -2.5530 -0.8549 11 6 0.4721 -2.6838 1.3318 12 6 0.3734 -4.2271 1.4213 13 7 1.6620 -4.7216 0.8913 14 6 1.4852 -5.9956 0.1816 15 1 1.0778 -6.7379 0.8678 16 6 2.8147 -6.4697 -0.3280 17 6 3.0020 -6.9750 -1.5049 18 6 1.9180 -7.1478 -2.5280 19 6 0.5440 -7.0546 -1.8609 20 6 0.5145 -5.7960 -0.9845 21 6 2.2280 -3.6935 -0.0012 22 1 -0.4850 0.8401 0.0004 23 1 -0.5182 -2.2320 1.2735 24 1 1.0352 -2.2792 2.1727 25 1 -0.4528 -4.5907 0.8103 26 1 0.2442 -4.5397 2.4575 27 1 3.6683 -6.3838 0.3280 28 1 4.0007 -7.2922 -1.7667 29 1 2.0229 -8.1225 -3.0045 30 1 2.0065 -6.3673 -3.2836 31 1 0.3765 -7.9361 -1.2421 32 1 -0.2305 -6.9871 -2.6251 33 1 -0.4934 -5.6410 -0.5998 34 1 0.8200 -4.9298 -1.5714 35 1 3.2023 -3.3757 0.3702 36 1 2.3257 -4.0922 -1.0110 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306610018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:35 Heat of formation + Delta-G solvation = 9.084833 kcal Electronic energy + Delta-G solvation = -15593.958342 eV Core-core repulsion = 13270.550613 eV Total energy + Delta-G solvation = -2323.407729 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.44095 -36.49240 -33.01017 -30.93930 -30.73991 -28.28896 -27.36621 -24.49892 -22.48505 -22.13548 -19.69759 -19.50538 -17.32138 -16.40376 -16.12494 -15.22338 -14.48909 -14.31083 -13.44706 -13.38748 -13.00748 -12.47956 -12.42759 -12.11405 -12.05470 -11.61319 -11.08796 -11.02100 -10.77426 -10.64525 -10.54283 -10.34967 -10.19863 -9.91462 -9.55327 -9.23102 -8.83729 -8.75938 -8.36956 -7.47263 -6.00568 -4.02474 2.52244 3.30757 3.38806 3.43240 4.45239 4.70482 4.91761 5.04417 5.17692 5.32649 5.44669 5.59710 5.69990 5.70730 5.81009 5.94381 5.98632 6.07564 6.13040 6.21403 6.32954 6.38185 6.48025 6.62379 6.70393 6.87225 6.95276 7.10115 7.21202 7.24847 7.64014 7.66073 7.90147 7.94875 8.03938 8.45602 8.99768 9.61345 11.09597 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.041310 B = 0.007339 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.640175 B = 3814.413703 C = 3975.523982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.057 0.943 9 C 0.036 3.964 10 H 0.029 0.971 11 C -0.104 4.104 12 C 0.032 3.968 13 N -0.526 5.526 14 C 0.109 3.891 15 H 0.079 0.921 16 C -0.126 4.126 17 C -0.167 4.167 18 C -0.089 4.089 19 C -0.114 4.114 20 C -0.156 4.156 21 C 0.047 3.953 22 H 0.259 0.741 23 H 0.068 0.932 24 H 0.055 0.945 25 H 0.039 0.961 26 H 0.059 0.941 27 H 0.106 0.894 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -12.403 -1.985 12.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.075 0.925 9 C 0.017 3.983 10 H 0.047 0.953 11 C -0.143 4.143 12 C -0.096 4.096 13 N -0.248 5.248 14 C 0.000 4.000 15 H 0.097 0.903 16 C -0.145 4.145 17 C -0.186 4.186 18 C -0.126 4.126 19 C -0.152 4.152 20 C -0.195 4.195 21 C -0.080 4.080 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.124 0.876 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.490 -12.372 -1.552 12.557 hybrid contribution -0.068 1.101 -0.645 1.278 sum 1.422 -11.271 -2.197 11.571 Atomic orbital electron populations 1.69975 1.05910 1.26325 1.50743 1.24982 0.94840 0.99062 0.95095 0.86567 0.80227 0.83904 0.77506 1.19751 1.21119 1.21055 1.21145 0.92820 0.90287 1.50472 0.92490 1.19859 0.92825 0.92117 0.93543 0.95265 1.22664 1.01268 0.90178 1.00186 1.23186 0.89925 0.98224 0.98241 1.63829 1.24190 1.02590 1.34231 1.20627 0.92481 0.93385 0.93474 0.90261 1.22028 0.98165 0.97667 0.96595 1.21977 0.98921 1.02412 0.95330 1.20424 0.93567 1.01350 0.97256 1.21546 0.96609 0.98220 0.98871 1.22362 1.00401 0.98597 0.98100 1.22980 0.99645 0.91977 0.93383 0.93169 0.91376 0.92600 0.94314 0.92253 0.87618 0.88249 0.91687 0.91138 0.92130 0.92090 0.91601 0.90595 0.91708 0.94264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 12.49 55.43 0.69 -25.04 16 2 C 0.06 1.72 5.36 -17.82 -0.10 1.63 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.12 8.47 -34.44 -0.29 -14.41 16 8 H 0.06 1.57 7.53 -52.48 -0.40 1.18 16 9 C 0.04 0.90 2.78 -89.79 -0.25 0.65 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 11 C -0.10 -2.46 5.96 -24.44 -0.15 -2.61 16 12 C 0.03 0.62 6.48 -2.30 -0.01 0.60 16 13 N -0.53 -10.17 5.19 -225.03 -1.17 -11.33 16 14 C 0.11 1.77 2.52 -69.16 -0.17 1.60 16 15 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 16 C -0.13 -1.90 8.00 -35.90 -0.29 -2.19 16 17 C -0.17 -2.24 9.80 -35.90 -0.35 -2.59 16 18 C -0.09 -1.09 6.12 -28.18 -0.17 -1.26 16 19 C -0.11 -1.45 6.01 -26.52 -0.16 -1.61 16 20 C -0.16 -2.44 4.57 -26.51 -0.12 -2.57 16 21 C 0.05 1.02 5.16 -2.83 -0.01 1.01 16 22 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 23 H 0.07 1.71 7.77 -51.93 -0.40 1.30 16 24 H 0.06 1.38 8.04 -51.93 -0.42 0.96 16 25 H 0.04 0.73 5.70 -51.93 -0.30 0.43 16 26 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 28 H 0.10 1.18 8.06 -52.48 -0.42 0.75 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.72 8.12 -51.93 -0.42 0.29 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.04 6.46 -51.93 -0.34 0.71 16 34 H 0.08 1.38 6.15 -51.93 -0.32 1.06 16 35 H 0.06 1.48 7.63 -51.93 -0.40 1.08 16 36 H 0.04 0.82 5.59 -51.93 -0.29 0.53 16 LS Contribution 276.05 15.07 4.16 4.16 Total: -1.00 -28.17 276.05 -9.21 -37.38 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.79 Total: 0.12 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: -2.08 Total: -21.74 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: -0.48 Total: -36.38 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.17 -9.21 -37.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306610018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.463 kcal (2) G-P(sol) polarization free energy of solvation -28.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds