Wall clock time and date at job start Mon Mar 30 2020 03:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00430 * 2 1 4 4 H 1.48502 * 109.46971 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47052 * 300.00131 * 3 2 1 6 6 H 1.48500 * 109.47085 * 60.00214 * 3 2 1 7 7 C 1.37882 * 119.99266 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99459 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00171 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.62703 * 56.90354 * 9 7 2 11 11 C 1.55422 * 110.69674 * 293.62500 * 9 7 2 12 12 C 1.54908 * 101.52379 * 205.97506 * 11 9 7 13 13 N 1.47846 * 104.89238 * 37.06612 * 12 11 9 14 14 C 1.46900 * 111.00020 * 213.57993 * 13 12 11 15 15 H 1.08996 * 109.35636 * 300.15168 * 14 13 12 16 16 C 1.50063 * 109.35668 * 180.55917 * 14 13 12 17 17 C 1.29441 * 124.07434 * 222.65906 * 16 14 13 18 18 C 1.50065 * 124.07852 * 0.47895 * 17 16 14 19 19 C 1.53024 * 110.14432 * 342.86313 * 18 17 16 20 20 C 1.53029 * 109.35429 * 59.87290 * 14 13 12 21 21 C 1.47448 * 108.56553 * 335.84749 * 13 12 11 22 22 H 0.97005 * 119.99569 * 359.97438 * 1 2 3 23 23 H 1.08998 * 111.10859 * 87.90659 * 11 9 7 24 24 H 1.08998 * 111.00401 * 323.99777 * 11 9 7 25 25 H 1.09002 * 110.37460 * 278.18013 * 12 11 9 26 26 H 1.08999 * 110.37548 * 155.95084 * 12 11 9 27 27 H 1.07995 * 117.96405 * 42.64663 * 16 14 13 28 28 H 1.08007 * 117.96323 * 180.49775 * 17 16 14 29 29 H 1.09001 * 109.35730 * 222.65613 * 18 17 16 30 30 H 1.08996 * 109.36043 * 103.07517 * 18 17 16 31 31 H 1.09000 * 109.64371 * 289.75022 * 19 18 17 32 32 H 1.09004 * 109.63798 * 169.12376 * 19 18 17 33 33 H 1.08994 * 109.64391 * 289.32498 * 20 14 13 34 34 H 1.09000 * 109.64407 * 49.74709 * 20 14 13 35 35 H 1.08999 * 109.88737 * 120.39623 * 21 13 12 36 36 H 1.09000 * 109.88899 * 241.58505 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3461 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 1 0.5760 -2.5530 -0.8549 11 6 0.4721 -2.6838 1.3318 12 6 0.3734 -4.2271 1.4213 13 7 1.6620 -4.7216 0.8913 14 6 1.4852 -5.9956 0.1816 15 1 1.0778 -6.7379 0.8678 16 6 2.8147 -6.4697 -0.3280 17 6 3.0020 -6.9750 -1.5049 18 6 1.9180 -7.1478 -2.5280 19 6 0.5440 -7.0546 -1.8609 20 6 0.5145 -5.7960 -0.9845 21 6 2.2280 -3.6935 -0.0012 22 1 -0.4850 0.8401 0.0004 23 1 -0.5182 -2.2320 1.2735 24 1 1.0352 -2.2792 2.1727 25 1 -0.4528 -4.5907 0.8103 26 1 0.2442 -4.5397 2.4575 27 1 3.6683 -6.3838 0.3280 28 1 4.0007 -7.2922 -1.7667 29 1 2.0229 -8.1225 -3.0045 30 1 2.0065 -6.3673 -3.2836 31 1 0.3765 -7.9361 -1.2421 32 1 -0.2305 -6.9871 -2.6251 33 1 -0.4934 -5.6410 -0.5998 34 1 0.8200 -4.9298 -1.5714 35 1 3.2023 -3.3757 0.3702 36 1 2.3257 -4.0922 -1.0110 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306610018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:34 Heat of formation + Delta-G solvation = -7.251255 kcal Electronic energy + Delta-G solvation = -15594.666728 eV Core-core repulsion = 13270.550613 eV Total energy + Delta-G solvation = -2324.116115 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.86229 -37.94309 -34.95885 -32.49780 -31.96641 -30.07970 -28.86222 -26.46159 -23.90544 -23.26572 -21.53757 -21.12677 -18.63978 -18.38706 -17.44095 -16.69969 -16.47603 -15.74211 -14.83590 -14.77777 -14.44480 -14.10437 -13.81983 -13.51317 -13.37018 -13.25501 -13.00368 -12.70095 -12.60110 -12.40713 -12.08677 -11.77530 -11.66675 -11.42842 -11.16093 -11.02153 -10.88454 -10.50124 -9.90046 -9.04303 -8.15402 -6.24686 1.38864 1.40632 1.41595 1.52491 2.41905 3.15853 3.24120 3.78393 3.92343 4.01278 4.22537 4.26471 4.37471 4.47459 4.52154 4.59974 4.62308 4.69767 4.77982 4.88474 4.97751 5.03144 5.05039 5.15578 5.26165 5.31104 5.40726 5.44949 5.57686 5.69657 5.79225 5.87975 5.98556 6.20867 6.34736 6.43077 6.84256 7.42639 8.94380 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.041310 B = 0.007339 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.640175 B = 3814.413703 C = 3975.523982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.031 3.969 10 H -0.002 1.002 11 C -0.098 4.098 12 C 0.043 3.957 13 N -0.528 5.528 14 C 0.109 3.891 15 H 0.093 0.907 16 C -0.152 4.152 17 C -0.152 4.152 18 C -0.092 4.092 19 C -0.109 4.109 20 C -0.153 4.153 21 C 0.066 3.934 22 H 0.261 0.739 23 H 0.045 0.955 24 H 0.039 0.961 25 H 0.048 0.952 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -13.792 -2.362 14.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.011 3.989 10 H 0.016 0.984 11 C -0.137 4.137 12 C -0.084 4.084 13 N -0.251 5.251 14 C 0.001 3.999 15 H 0.111 0.889 16 C -0.171 4.171 17 C -0.171 4.171 18 C -0.129 4.129 19 C -0.147 4.147 20 C -0.192 4.192 21 C -0.061 4.061 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.099 0.901 27 H 0.120 0.880 28 H 0.136 0.864 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.113 -13.777 -1.930 14.071 hybrid contribution -0.276 1.496 -0.571 1.625 sum 1.837 -12.281 -2.501 12.667 Atomic orbital electron populations 1.70091 1.07246 1.27225 1.51320 1.25764 0.95695 1.02461 0.94677 0.85545 0.79110 0.79611 0.77661 1.19131 1.20519 1.20519 1.21483 0.92879 0.91822 1.50683 0.92942 1.19797 0.93141 0.92890 0.93044 0.98352 1.22453 0.99359 0.93253 0.98644 1.23084 0.90562 0.94995 0.99802 1.63809 1.23898 1.03121 1.34287 1.20723 0.93704 0.91743 0.93750 0.88893 1.21953 0.97417 0.99999 0.97722 1.22271 1.00189 1.00066 0.94525 1.20518 0.92747 1.02800 0.96854 1.21539 0.97450 0.96897 0.98831 1.22288 0.99702 0.99115 0.98118 1.22639 0.98079 0.91351 0.94076 0.93026 0.93599 0.94232 0.93346 0.90110 0.87967 0.86362 0.88834 0.91515 0.90638 0.90938 0.92114 0.93592 0.93020 0.93873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.28 12.49 21.45 0.27 -54.01 16 2 C 0.01 0.73 5.36 84.66 0.45 1.18 16 3 Si 0.96 44.46 29.54 68.60 2.03 46.48 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.53 -30.14 8.47 25.60 0.22 -29.93 16 8 H 0.05 2.95 7.53 -2.91 -0.02 2.93 16 9 C 0.03 1.59 2.78 -10.26 -0.03 1.56 16 10 H 0.00 -0.10 8.14 -2.38 -0.02 -0.12 16 11 C -0.10 -4.77 5.96 32.08 0.19 -4.58 16 12 C 0.04 1.66 6.48 86.77 0.56 2.22 16 13 N -0.53 -20.14 5.19 -865.85 -4.49 -24.64 16 14 C 0.11 3.38 2.52 43.98 0.11 3.49 16 15 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 16 C -0.15 -4.32 8.00 27.04 0.22 -4.10 16 17 C -0.15 -3.65 9.80 27.04 0.27 -3.38 16 18 C -0.09 -1.98 6.12 29.66 0.18 -1.80 16 19 C -0.11 -2.48 6.01 30.73 0.18 -2.29 16 20 C -0.15 -4.65 4.57 30.73 0.14 -4.50 16 21 C 0.07 2.91 5.16 86.65 0.45 3.35 16 22 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 23 H 0.05 2.38 7.77 -2.39 -0.02 2.36 16 24 H 0.04 2.00 8.04 -2.39 -0.02 1.98 16 25 H 0.05 1.79 5.70 -2.39 -0.01 1.77 16 26 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 27 H 0.10 2.95 8.06 -2.91 -0.02 2.92 16 28 H 0.12 2.41 8.06 -2.91 -0.02 2.38 16 29 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.52 8.12 -2.39 -0.02 1.50 16 32 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.06 1.87 6.46 -2.39 -0.02 1.85 16 34 H 0.05 1.67 6.15 -2.39 -0.01 1.65 16 35 H 0.05 2.39 7.63 -2.39 -0.02 2.37 16 36 H 0.04 1.84 5.59 -2.39 -0.01 1.83 16 Total: -1.00 -60.95 276.05 1.77 -59.17 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.03 Total: 11.77 kcal Atomic # 6 Polarization: -41.72 SS G_CDS: 2.94 Total: -38.78 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -4.23 Total: -78.65 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -60.95 1.77 -59.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306610018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.921 kcal (2) G-P(sol) polarization free energy of solvation -60.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds