Wall clock time and date at job start Mon Mar 30 2020 03:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86805 * 119.99756 * 2 1 4 4 H 1.48497 * 109.46933 * 240.27384 * 3 2 1 5 5 H 1.48499 * 109.46976 * 0.27545 * 3 2 1 6 6 H 1.48497 * 109.46886 * 120.27394 * 3 2 1 7 7 C 1.38804 * 119.99846 * 180.27365 * 2 1 3 8 8 H 1.08006 * 119.99948 * 162.77544 * 7 2 1 9 9 N 1.36943 * 120.00146 * 342.78458 * 7 2 1 10 10 C 1.46978 * 120.27304 * 153.20665 * 9 7 2 11 11 C 1.54448 * 108.02687 * 130.72789 * 10 9 7 12 12 H 1.09003 * 112.44638 * 184.31499 * 11 10 9 13 13 C 1.55132 * 106.57162 * 59.72419 * 11 10 9 14 14 C 1.55134 * 101.79084 * 287.23719 * 13 11 10 15 15 H 1.08993 * 113.20682 * 196.94110 * 14 13 11 16 16 C 1.46979 * 120.27145 * 333.48095 * 9 7 2 17 17 C 1.54487 * 103.83094 * 319.33949 * 14 13 11 18 18 H 1.08995 * 111.49973 * 146.98447 * 17 14 13 19 19 C 1.54199 * 108.74453 * 270.31107 * 17 14 13 20 20 C 1.56802 * 103.36906 * 138.26281 * 19 17 14 21 21 C 1.54860 * 102.80890 * 321.73341 * 20 19 17 22 22 C 1.54195 * 104.28084 * 38.32848 * 21 20 19 23 23 H 1.09009 * 111.48494 * 98.10852 * 22 21 20 24 24 H 0.97000 * 119.99992 * 359.72908 * 1 2 3 25 25 H 1.08994 * 109.71208 * 250.48201 * 10 9 7 26 26 H 1.09010 * 109.70619 * 11.10702 * 10 9 7 27 27 H 1.09000 * 110.97179 * 169.11525 * 13 11 10 28 28 H 1.09001 * 110.96497 * 45.36067 * 13 11 10 29 29 H 1.09003 * 109.71761 * 348.91161 * 16 9 7 30 30 H 1.08997 * 109.71873 * 109.55559 * 16 9 7 31 31 H 1.09000 * 110.47322 * 256.38273 * 19 17 14 32 32 H 1.08996 * 110.47238 * 18.99026 * 19 17 14 33 33 H 1.08998 * 110.55534 * 203.47394 * 20 19 17 34 34 H 1.08999 * 111.04357 * 80.22054 * 20 19 17 35 35 H 1.08993 * 110.47205 * 279.62761 * 21 20 19 36 36 H 1.09000 * 110.57939 * 157.08316 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.0989 1.6994 -1.2158 5 1 1.2851 2.7465 0.0067 6 1 3.1089 1.6936 1.2091 7 6 2.0102 -1.2021 -0.0057 8 1 3.0539 -1.2218 -0.2828 9 7 1.3715 -2.3631 0.3397 10 6 1.8386 -3.6518 -0.1908 11 6 1.9746 -4.6348 0.9927 12 1 2.3900 -5.5960 0.6898 13 6 0.5671 -4.7522 1.6344 14 6 0.4273 -3.3804 2.3451 15 1 -0.3622 -3.3644 3.0964 16 6 0.2096 -2.3302 1.2393 17 6 1.8271 -3.1335 2.9502 18 1 2.0759 -2.0724 2.9616 19 6 1.8678 -3.7385 4.3679 20 6 3.2788 -4.4195 4.4311 21 6 3.4405 -5.0071 3.0075 22 6 2.8203 -3.9403 2.0829 23 1 3.5846 -3.2972 1.6464 24 1 -0.4850 0.8400 0.0040 25 1 1.1163 -4.0365 -0.9107 26 1 2.8067 -3.5211 -0.6745 27 1 0.5337 -5.5697 2.3547 28 1 -0.2007 -4.8758 0.8706 29 1 0.1179 -1.3399 1.6855 30 1 -0.6954 -2.5673 0.6799 31 1 1.7907 -2.9533 5.1199 32 1 1.0681 -4.4683 4.4941 33 1 3.2882 -5.2119 5.1795 34 1 4.0585 -3.6862 4.6372 35 1 2.8988 -5.9489 2.9200 36 1 4.4945 -5.1512 2.7699 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306899502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:17 Heat of formation + Delta-G solvation = 5.919791 kcal Electronic energy + Delta-G solvation = -16331.679953 eV Core-core repulsion = 14008.134978 eV Total energy + Delta-G solvation = -2323.544975 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.93453 -35.40253 -32.74073 -31.07162 -30.01649 -27.09988 -26.74112 -25.03718 -21.81578 -21.62489 -20.32635 -18.39606 -18.16626 -16.73254 -15.24889 -14.82214 -14.15686 -14.05381 -13.16515 -13.03392 -12.76156 -12.47817 -12.33560 -11.94851 -11.38512 -11.09755 -10.96101 -10.72305 -10.64020 -10.42909 -10.28064 -10.08180 -9.87529 -9.77972 -9.60015 -9.38611 -9.36183 -9.21875 -8.37999 -6.58598 -5.71382 -3.11404 3.41537 3.47323 3.48543 4.55259 5.01009 5.10445 5.12873 5.44360 5.55368 5.58515 5.73000 5.84157 5.86753 5.99721 6.07579 6.16917 6.18285 6.24018 6.30990 6.32681 6.42930 6.47600 6.51070 6.70305 6.73412 6.86493 6.91371 7.00165 7.05034 7.08324 7.30191 7.45702 7.73785 7.86299 8.51671 9.29753 9.94149 10.49821 11.36970 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.034231 B = 0.010513 C = 0.009810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.769572 B = 2662.658091 C = 2853.420704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.899 3.101 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.063 0.937 9 N -0.588 5.588 10 C 0.151 3.849 11 C -0.110 4.110 12 H 0.068 0.932 13 C -0.109 4.109 14 C -0.120 4.120 15 H 0.066 0.934 16 C 0.182 3.818 17 C -0.067 4.067 18 H 0.078 0.922 19 C -0.122 4.122 20 C -0.123 4.123 21 C -0.121 4.121 22 C -0.065 4.065 23 H 0.074 0.926 24 H 0.253 0.747 25 H 0.013 0.987 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.015 0.985 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.493 -8.758 6.534 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.197 4.197 3 Si 0.729 3.271 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.376 4.376 8 H 0.081 0.919 9 N -0.311 5.311 10 C 0.024 3.976 11 C -0.129 4.129 12 H 0.086 0.914 13 C -0.146 4.146 14 C -0.139 4.139 15 H 0.085 0.915 16 C 0.056 3.944 17 C -0.085 4.085 18 H 0.096 0.904 19 C -0.160 4.160 20 C -0.161 4.161 21 C -0.159 4.159 22 C -0.084 4.084 23 H 0.092 0.908 24 H 0.063 0.937 25 H 0.031 0.969 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.033 0.967 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.381 -8.588 6.501 11.290 hybrid contribution 0.364 0.913 -0.061 0.985 sum 3.745 -7.675 6.439 10.696 Atomic orbital electron populations 1.70043 1.05169 1.25380 1.54395 1.24973 0.95227 0.98172 1.01377 0.86425 0.78927 0.83724 0.78058 1.21030 1.21737 1.21130 1.19125 0.92540 0.84861 1.41100 0.91925 1.44001 1.34284 1.01157 1.51608 1.21198 0.97148 0.86891 0.92327 1.22903 0.95147 0.97655 0.97240 0.91402 1.22542 0.96773 0.96834 0.98464 1.23052 0.95911 0.96767 0.98213 0.91539 1.20948 0.88259 0.96873 0.88302 1.22169 0.94806 0.99601 0.91956 0.90368 1.22837 0.96197 0.99112 0.97822 1.22776 0.97505 0.99126 0.96668 1.22456 0.99663 0.98631 0.95102 1.22143 0.96870 0.94937 0.94438 0.90763 0.93740 0.96872 0.93297 0.93588 0.92437 0.90105 0.96666 0.92689 0.92076 0.92810 0.92008 0.92227 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.53 11.16 55.49 0.62 -25.91 16 2 C 0.00 0.02 4.90 -17.43 -0.09 -0.07 16 3 Si 0.90 21.95 29.59 -169.99 -5.03 16.92 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.25 -6.76 9.58 -15.06 -0.14 -6.91 16 8 H 0.06 1.70 7.87 -52.48 -0.41 1.29 16 9 N -0.59 -14.69 2.16 -170.93 -0.37 -15.06 16 10 C 0.15 3.24 5.87 -3.02 -0.02 3.22 16 11 C -0.11 -1.96 3.36 -87.96 -0.30 -2.25 16 12 H 0.07 1.08 8.00 -51.93 -0.42 0.66 16 13 C -0.11 -1.92 5.91 -24.47 -0.14 -2.07 16 14 C -0.12 -2.32 3.32 -88.16 -0.29 -2.61 16 15 H 0.07 1.21 7.95 -51.93 -0.41 0.79 16 16 C 0.18 4.40 4.47 -3.24 -0.01 4.38 16 17 C -0.07 -1.24 2.77 -88.38 -0.25 -1.48 16 18 H 0.08 1.69 7.94 -51.93 -0.41 1.28 16 19 C -0.12 -1.87 6.40 -24.05 -0.15 -2.02 16 20 C -0.12 -1.70 6.96 -23.70 -0.16 -1.86 16 21 C -0.12 -1.76 6.28 -25.13 -0.16 -1.92 16 22 C -0.07 -1.16 2.79 -88.40 -0.25 -1.40 16 23 H 0.07 1.47 7.95 -51.92 -0.41 1.06 16 24 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 25 H 0.01 0.30 8.13 -51.93 -0.42 -0.13 16 26 H 0.05 1.03 7.93 -51.92 -0.41 0.62 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.05 7.95 -51.93 -0.41 0.64 16 29 H 0.08 2.19 6.19 -51.93 -0.32 1.86 16 30 H 0.02 0.40 8.13 -51.93 -0.42 -0.02 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.90 7.69 -51.93 -0.40 0.50 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.83 7.75 -51.93 -0.40 0.43 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 269.33 15.07 4.06 4.06 Total: -1.00 -28.45 269.33 -8.79 -37.24 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -6.11 Total: -2.25 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: -1.96 Total: -15.00 kcal Atomic # 7 Polarization: -41.23 SS G_CDS: 0.25 Total: -40.98 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.45 -8.79 -37.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306899502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.160 kcal (2) G-P(sol) polarization free energy of solvation -28.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds