Wall clock time and date at job start Mon Mar 30 2020 03:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86789 * 120.00436 * 2 1 4 4 H 1.48495 * 109.47470 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47362 * 119.99959 * 3 2 1 6 6 H 1.48504 * 109.47329 * 239.99846 * 3 2 1 7 7 C 1.38816 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00069 * 196.03888 * 7 2 1 9 9 N 1.36941 * 119.99962 * 16.04086 * 7 2 1 10 10 C 1.46970 * 119.55366 * 25.47146 * 9 7 2 11 11 C 1.50856 * 111.52997 * 139.63031 * 10 9 7 12 12 H 1.08997 * 110.35361 * 171.36206 * 11 10 9 13 13 C 1.56216 * 108.10059 * 49.54280 * 11 10 9 14 14 C 1.57514 * 99.66750 * 288.67985 * 13 11 10 15 15 H 1.08999 * 114.70930 * 205.94431 * 14 13 11 16 16 C 1.47621 * 119.55556 * 205.20519 * 9 7 2 17 17 C 1.48531 * 104.42286 * 332.08139 * 14 13 11 18 18 H 1.09007 * 101.38934 * 96.72131 * 17 14 13 19 19 C 1.47304 * 136.81296 * 218.21808 * 17 14 13 20 20 C 1.56403 * 103.26623 * 172.76228 * 19 17 14 21 21 C 1.56303 * 105.91677 * 355.18138 * 20 19 17 22 22 C 1.50717 * 115.71663 * 297.61530 * 11 10 9 23 23 H 1.09003 * 111.77699 * 184.41829 * 22 11 10 24 24 H 0.97004 * 119.99475 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.07281 * 260.15354 * 10 9 7 26 26 H 1.08996 * 109.06590 * 19.10700 * 10 9 7 27 27 H 1.08995 * 111.36427 * 46.29070 * 13 11 10 28 28 H 1.09003 * 111.36257 * 171.07104 * 13 11 10 29 29 H 1.09000 * 110.39122 * 348.62194 * 16 9 7 30 30 H 1.08998 * 110.39593 * 111.05755 * 16 9 7 31 31 H 1.09001 * 110.65630 * 54.31046 * 19 17 14 32 32 H 1.09002 * 110.79564 * 291.27342 * 19 17 14 33 33 H 1.08996 * 110.15872 * 236.06904 * 20 19 17 34 34 H 1.09000 * 110.16069 * 114.29378 * 20 19 17 35 35 H 1.08999 * 110.79865 * 215.66631 * 21 20 19 36 36 H 1.09004 * 110.80326 * 92.17914 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6962 1.2125 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0586 -1.2204 0.2589 9 7 1.3654 -2.3652 -0.3266 10 6 0.1756 -2.3168 -1.1880 11 6 0.1677 -3.4485 -2.1855 12 1 -0.7876 -3.4859 -2.7089 13 6 0.4413 -4.7783 -1.4127 14 6 1.9641 -4.5742 -1.0657 15 1 2.5267 -5.4968 -0.9236 16 6 1.8782 -3.6511 0.1858 17 6 2.4773 -3.7009 -2.1521 18 1 2.4195 -2.7182 -1.6837 19 6 3.7131 -3.5876 -2.9456 20 6 3.3538 -2.5062 -4.0169 21 6 1.8417 -2.1746 -3.8009 22 6 1.3078 -3.4593 -3.1713 23 1 1.1981 -4.2555 -3.9076 24 1 -0.4849 0.8401 -0.0004 25 1 -0.7172 -2.3840 -0.5663 26 1 0.1634 -1.3685 -1.7254 27 1 -0.1661 -4.8453 -0.5102 28 1 0.2931 -5.6476 -2.0535 29 1 2.8662 -3.5175 0.6264 30 1 1.1880 -4.0709 0.9175 31 1 3.9518 -4.5378 -3.4233 32 1 4.5430 -3.2520 -2.3237 33 1 3.5118 -2.9036 -5.0195 34 1 3.9596 -1.6126 -3.8665 35 1 1.3491 -1.9764 -4.7528 36 1 1.7236 -1.3317 -3.1199 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306899504.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:22 Heat of formation + Delta-G solvation = 54.288123 kcal Electronic energy + Delta-G solvation = -16627.194339 eV Core-core repulsion = 14305.746772 eV Total energy + Delta-G solvation = -2321.447567 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.80032 -35.41666 -33.19424 -31.26509 -29.99557 -27.01041 -26.32073 -25.02807 -22.58614 -21.65526 -20.08528 -18.51019 -17.98891 -16.53718 -15.22916 -14.77434 -14.17387 -13.76347 -13.37628 -13.34691 -12.80792 -12.45595 -12.04098 -11.61085 -11.56748 -11.36255 -10.95620 -10.74852 -10.59428 -10.37874 -10.20636 -9.96190 -9.93326 -9.76164 -9.38508 -9.30976 -9.16009 -8.65538 -8.31517 -6.56879 -5.78272 -3.20956 3.37420 3.43432 3.44513 4.48310 4.84642 5.25704 5.37096 5.42497 5.49546 5.60772 5.74802 5.80238 6.01821 6.10921 6.16973 6.22070 6.23499 6.35525 6.39402 6.45972 6.54585 6.57132 6.71732 6.72454 6.79757 6.90212 6.97940 6.99991 7.15475 7.43098 7.49484 7.69890 7.80972 7.87888 8.40944 9.20753 9.83249 10.33531 11.28289 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.028676 B = 0.013149 C = 0.011344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.184714 B = 2128.978955 C = 2467.587365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.006 3.994 3 Si 0.899 3.101 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.262 4.262 8 H 0.067 0.933 9 N -0.578 5.578 10 C 0.188 3.812 11 C -0.105 4.105 12 H 0.057 0.943 13 C -0.114 4.114 14 C -0.078 4.078 15 H 0.069 0.931 16 C 0.139 3.861 17 C -0.208 4.208 18 H 0.142 0.858 19 C -0.074 4.074 20 C -0.118 4.118 21 C -0.112 4.112 22 C -0.087 4.087 23 H 0.056 0.944 24 H 0.254 0.746 25 H 0.026 0.974 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.025 0.975 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 -6.669 -5.544 9.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.193 4.193 3 Si 0.729 3.271 4 H -0.216 1.216 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.391 4.391 8 H 0.085 0.915 9 N -0.301 5.301 10 C 0.063 3.937 11 C -0.124 4.124 12 H 0.075 0.925 13 C -0.152 4.152 14 C -0.099 4.099 15 H 0.088 0.912 16 C 0.013 3.987 17 C -0.226 4.226 18 H 0.158 0.842 19 C -0.111 4.111 20 C -0.155 4.155 21 C -0.150 4.150 22 C -0.106 4.106 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.093 0.907 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.882 -6.447 -5.502 8.952 hybrid contribution 0.317 0.884 -0.026 0.939 sum 3.199 -5.563 -5.528 8.470 Atomic orbital electron populations 1.70060 1.05184 1.25586 1.53916 1.25005 0.95262 0.98251 1.00771 0.86419 0.78975 0.83527 0.78214 1.21634 1.20886 1.20917 1.19196 0.92453 0.84704 1.42736 0.91517 1.44435 1.31093 1.01621 1.52962 1.20109 0.88465 0.95339 0.89757 1.21577 0.96844 0.97459 0.96557 0.92494 1.23463 0.96036 0.96547 0.99156 1.21680 0.94641 0.96983 0.96556 0.91227 1.21961 0.96999 0.86849 0.92922 1.21427 0.93575 1.09857 0.97751 0.84191 1.20586 0.96982 0.97097 0.96463 1.22934 0.96612 0.98260 0.97734 1.22168 0.94459 0.98627 0.99699 1.21944 0.96339 0.96556 0.95732 0.92586 0.93569 0.95583 0.90690 0.92022 0.93374 0.92986 0.95736 0.94150 0.92783 0.92940 0.92348 0.93345 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.89 11.06 55.49 0.61 -25.28 16 2 C 0.01 0.16 4.90 -17.43 -0.09 0.08 16 3 Si 0.90 21.55 29.58 -169.99 -5.03 16.53 16 4 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.26 -7.02 8.74 -15.06 -0.13 -7.15 16 8 H 0.07 1.77 7.84 -52.49 -0.41 1.36 16 9 N -0.58 -14.18 1.70 -171.52 -0.29 -14.47 16 10 C 0.19 4.48 3.76 -4.86 -0.02 4.47 16 11 C -0.10 -2.07 3.49 -91.11 -0.32 -2.39 16 12 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 13 C -0.11 -2.07 6.06 -22.54 -0.14 -2.20 16 14 C -0.08 -1.45 4.65 -88.88 -0.41 -1.86 16 15 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 16 C 0.14 2.95 6.11 -1.97 -0.01 2.93 16 17 C -0.21 -3.95 2.94 -93.37 -0.27 -4.23 16 18 H 0.14 3.14 2.54 -57.88 -0.15 2.99 16 19 C -0.07 -1.26 6.67 -27.64 -0.18 -1.45 16 20 C -0.12 -1.95 6.93 -23.13 -0.16 -2.11 16 21 C -0.11 -2.07 6.18 -25.11 -0.16 -2.22 16 22 C -0.09 -1.62 3.25 -89.75 -0.29 -1.91 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 25 H 0.03 0.68 8.02 -51.93 -0.42 0.27 16 26 H 0.07 1.98 5.54 -51.93 -0.29 1.69 16 27 H 0.06 1.13 7.44 -51.93 -0.39 0.75 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 30 H 0.02 0.52 7.62 -51.93 -0.40 0.13 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.79 6.63 -51.93 -0.34 1.44 16 LS Contribution 262.50 15.07 3.96 3.96 Total: -1.00 -27.60 262.50 -8.67 -36.27 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.74 Total: 1.04 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -2.18 Total: -18.04 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.32 Total: -39.75 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.60 -8.67 -36.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306899504.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.562 kcal (2) G-P(sol) polarization free energy of solvation -27.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds