Wall clock time and date at job start Mon Mar 30 2020 03:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86789 * 120.00436 * 2 1 4 4 H 1.48495 * 109.47470 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47362 * 119.99959 * 3 2 1 6 6 H 1.48504 * 109.47329 * 239.99846 * 3 2 1 7 7 C 1.38816 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00069 * 196.03888 * 7 2 1 9 9 N 1.36941 * 119.99962 * 16.04086 * 7 2 1 10 10 C 1.46970 * 119.55366 * 25.47146 * 9 7 2 11 11 C 1.50856 * 111.52997 * 139.63031 * 10 9 7 12 12 H 1.08997 * 110.35361 * 171.36206 * 11 10 9 13 13 C 1.56216 * 108.10059 * 49.54280 * 11 10 9 14 14 C 1.57514 * 99.66750 * 288.67985 * 13 11 10 15 15 H 1.08999 * 114.70930 * 205.94431 * 14 13 11 16 16 C 1.47621 * 119.55556 * 205.20519 * 9 7 2 17 17 C 1.48531 * 104.42286 * 332.08139 * 14 13 11 18 18 H 1.09007 * 101.38934 * 96.72131 * 17 14 13 19 19 C 1.47304 * 136.81296 * 218.21808 * 17 14 13 20 20 C 1.56403 * 103.26623 * 172.76228 * 19 17 14 21 21 C 1.56303 * 105.91677 * 355.18138 * 20 19 17 22 22 C 1.50717 * 115.71663 * 297.61530 * 11 10 9 23 23 H 1.09003 * 111.77699 * 184.41829 * 22 11 10 24 24 H 0.97004 * 119.99475 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.07281 * 260.15354 * 10 9 7 26 26 H 1.08996 * 109.06590 * 19.10700 * 10 9 7 27 27 H 1.08995 * 111.36427 * 46.29070 * 13 11 10 28 28 H 1.09003 * 111.36257 * 171.07104 * 13 11 10 29 29 H 1.09000 * 110.39122 * 348.62194 * 16 9 7 30 30 H 1.08998 * 110.39593 * 111.05755 * 16 9 7 31 31 H 1.09001 * 110.65630 * 54.31046 * 19 17 14 32 32 H 1.09002 * 110.79564 * 291.27342 * 19 17 14 33 33 H 1.08996 * 110.15872 * 236.06904 * 20 19 17 34 34 H 1.09000 * 110.16069 * 114.29378 * 20 19 17 35 35 H 1.08999 * 110.79865 * 215.66631 * 21 20 19 36 36 H 1.09004 * 110.80326 * 92.17914 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6962 1.2125 6 1 3.1041 1.6962 -1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0586 -1.2204 0.2589 9 7 1.3654 -2.3652 -0.3266 10 6 0.1756 -2.3168 -1.1880 11 6 0.1677 -3.4485 -2.1855 12 1 -0.7876 -3.4859 -2.7089 13 6 0.4413 -4.7783 -1.4127 14 6 1.9641 -4.5742 -1.0657 15 1 2.5267 -5.4968 -0.9236 16 6 1.8782 -3.6511 0.1858 17 6 2.4773 -3.7009 -2.1521 18 1 2.4195 -2.7182 -1.6837 19 6 3.7131 -3.5876 -2.9456 20 6 3.3538 -2.5062 -4.0169 21 6 1.8417 -2.1746 -3.8009 22 6 1.3078 -3.4593 -3.1713 23 1 1.1981 -4.2555 -3.9076 24 1 -0.4849 0.8401 -0.0004 25 1 -0.7172 -2.3840 -0.5663 26 1 0.1634 -1.3685 -1.7254 27 1 -0.1661 -4.8453 -0.5102 28 1 0.2931 -5.6476 -2.0535 29 1 2.8662 -3.5175 0.6264 30 1 1.1880 -4.0709 0.9175 31 1 3.9518 -4.5378 -3.4233 32 1 4.5430 -3.2520 -2.3237 33 1 3.5118 -2.9036 -5.0195 34 1 3.9596 -1.6126 -3.8665 35 1 1.3491 -1.9764 -4.7528 36 1 1.7236 -1.3317 -3.1199 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306899504.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:21 Heat of formation + Delta-G solvation = 40.796100 kcal Electronic energy + Delta-G solvation = -16627.779397 eV Core-core repulsion = 14305.746772 eV Total energy + Delta-G solvation = -2322.032625 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.36825 -37.05257 -34.99539 -32.95751 -31.85189 -28.52955 -27.85957 -26.88357 -24.24899 -23.46714 -21.49503 -20.09766 -19.64138 -18.38509 -16.79633 -16.70224 -15.93674 -15.25815 -14.98344 -14.90334 -14.61417 -14.23059 -13.57053 -13.24124 -13.14067 -12.98882 -12.80844 -12.63060 -12.29809 -12.06381 -11.88927 -11.63780 -11.47064 -11.28868 -10.99377 -10.92709 -10.78779 -10.43101 -10.06562 -8.54320 -7.86224 -5.30926 1.43112 1.45314 1.51531 2.48724 3.27662 3.37166 3.59714 3.89455 4.01038 4.14145 4.29152 4.30746 4.50235 4.63617 4.70052 4.75779 4.84526 4.92914 4.95971 4.98632 5.02842 5.10493 5.12514 5.22167 5.27750 5.37830 5.40194 5.46501 5.52419 5.64660 5.75280 5.80142 6.03660 6.30541 6.38466 7.14341 7.85582 8.30392 9.17580 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.028676 B = 0.013149 C = 0.011344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.184714 B = 2128.978955 C = 2467.587365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.045 4.045 3 Si 0.958 3.042 4 H -0.295 1.295 5 H -0.276 1.276 6 H -0.278 1.278 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.205 3.795 11 C -0.109 4.109 12 H 0.067 0.933 13 C -0.105 4.105 14 C -0.068 4.068 15 H 0.101 0.899 16 C 0.133 3.867 17 C -0.201 4.201 18 H 0.105 0.895 19 C -0.073 4.073 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.082 4.082 23 H 0.083 0.917 24 H 0.248 0.752 25 H -0.012 1.012 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.022 0.978 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.363 -8.536 -7.005 11.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.241 4.241 3 Si 0.786 3.214 4 H -0.221 1.221 5 H -0.201 1.201 6 H -0.204 1.204 7 C -0.392 4.392 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.080 3.920 11 C -0.129 4.129 12 H 0.085 0.915 13 C -0.143 4.143 14 C -0.088 4.088 15 H 0.119 0.881 16 C 0.008 3.992 17 C -0.219 4.219 18 H 0.122 0.878 19 C -0.110 4.110 20 C -0.150 4.150 21 C -0.152 4.152 22 C -0.100 4.100 23 H 0.101 0.899 24 H 0.058 0.942 25 H 0.006 0.994 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.227 -8.340 -6.960 11.656 hybrid contribution -0.090 1.446 0.455 1.519 sum 4.138 -6.894 -6.505 10.342 Atomic orbital electron populations 1.70220 1.06525 1.25688 1.55759 1.25677 0.95928 1.01108 1.01370 0.85481 0.77722 0.79817 0.78369 1.22106 1.20147 1.20433 1.19442 0.92506 0.85926 1.41369 0.91735 1.44585 1.31017 1.02198 1.53522 1.19771 0.86856 0.95664 0.89681 1.21486 0.98295 0.96769 0.96339 0.91480 1.23411 0.95410 0.96365 0.99084 1.21651 0.95389 0.97294 0.94419 0.88068 1.22116 0.96542 0.86112 0.94475 1.21491 0.94918 1.07760 0.97775 0.87784 1.20596 0.95728 0.98385 0.96320 1.22921 0.94706 0.98144 0.99252 1.22120 0.96463 0.97192 0.99410 1.21953 0.95119 0.97144 0.95803 0.89876 0.94241 0.99378 0.94154 0.92919 0.90097 0.93118 0.95986 0.91492 0.93328 0.89974 0.93031 0.91686 0.94413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.05 11.06 21.65 0.24 -55.81 16 2 C -0.05 -2.56 4.90 84.86 0.42 -2.14 16 3 Si 0.96 45.49 29.58 68.60 2.03 47.52 16 4 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.26 -14.45 8.74 84.03 0.73 -13.71 16 8 H 0.06 3.50 7.84 -2.91 -0.02 3.48 16 9 N -0.59 -29.56 1.70 -696.56 -1.19 -30.75 16 10 C 0.21 10.13 3.76 85.59 0.32 10.45 16 11 C -0.11 -4.21 3.49 -11.11 -0.04 -4.24 16 12 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 13 C -0.11 -3.51 6.06 33.31 0.20 -3.31 16 14 C -0.07 -2.31 4.65 -9.66 -0.04 -2.36 16 15 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 16 C 0.13 5.56 6.11 87.11 0.53 6.10 16 17 C -0.20 -7.13 2.94 -12.58 -0.04 -7.17 16 18 H 0.11 4.61 2.54 -14.15 -0.04 4.57 16 19 C -0.07 -2.25 6.67 30.00 0.20 -2.05 16 20 C -0.11 -3.43 6.93 32.93 0.23 -3.20 16 21 C -0.11 -4.07 6.18 31.65 0.20 -3.87 16 22 C -0.08 -2.83 3.25 -10.23 -0.03 -2.86 16 23 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 25 H -0.01 -0.65 8.02 -2.39 -0.02 -0.67 16 26 H 0.04 2.24 5.54 -2.39 -0.01 2.23 16 27 H 0.05 1.85 7.44 -2.39 -0.02 1.83 16 28 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 29 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 30 H 0.02 0.93 7.62 -2.39 -0.02 0.92 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 36 H 0.04 1.67 6.63 -2.38 -0.02 1.66 16 Total: -1.00 -61.03 262.50 4.77 -56.26 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 1.01 Total: 11.14 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 2.68 Total: -28.36 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -0.95 Total: -86.56 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -61.03 4.77 -56.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306899504.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.057 kcal (2) G-P(sol) polarization free energy of solvation -61.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds