Wall clock time and date at job start Mon Mar 30 2020 03:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00071 * 2 1 4 4 H 1.48499 * 109.47379 * 240.00269 * 3 2 1 5 5 H 1.48505 * 109.46717 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47073 * 120.00060 * 3 2 1 7 7 C 1.38818 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00597 * 189.11631 * 7 2 1 9 9 N 1.36938 * 119.99530 * 9.11751 * 7 2 1 10 10 C 1.48143 * 127.83959 * 15.27001 * 9 7 2 11 11 C 1.54401 * 104.61868 * 140.71531 * 10 9 7 12 12 H 1.09006 * 110.97614 * 263.83040 * 11 10 9 13 13 C 1.54235 * 104.97424 * 23.79465 * 11 10 9 14 14 H 1.09001 * 110.96516 * 240.13827 * 13 11 10 15 15 C 1.48158 * 127.83608 * 195.59536 * 9 7 2 16 16 C 1.52936 * 109.24336 * 116.93134 * 13 11 10 17 17 C 1.51682 * 110.23134 * 300.47103 * 16 13 11 18 18 C 1.52991 * 109.64764 * 59.65064 * 17 16 13 19 19 C 1.52950 * 109.57821 * 140.99937 * 11 10 9 20 20 C 1.52979 * 109.52891 * 185.33414 * 19 11 10 21 21 C 1.52977 * 109.56214 * 59.98661 * 16 13 11 22 22 H 0.96996 * 119.99940 * 359.97438 * 1 2 3 23 23 H 1.09007 * 110.40454 * 259.49680 * 10 9 7 24 24 H 1.09000 * 110.40680 * 21.92389 * 10 9 7 25 25 H 1.08996 * 110.40560 * 338.11461 * 15 9 7 26 26 H 1.08993 * 110.40954 * 100.44197 * 15 9 7 27 27 H 1.08998 * 109.43830 * 179.85630 * 16 13 11 28 28 H 1.08999 * 109.11606 * 299.76341 * 17 16 13 29 29 H 1.08991 * 109.64607 * 179.86889 * 17 16 13 30 30 H 1.08998 * 109.46838 * 240.39721 * 18 17 16 31 31 H 1.08999 * 109.45921 * 120.40281 * 18 17 16 32 32 H 1.08997 * 109.43390 * 65.48700 * 19 11 10 33 33 H 1.09002 * 109.46912 * 180.19735 * 20 19 11 34 34 H 1.08996 * 109.46994 * 300.19408 * 20 19 11 35 35 H 1.08999 * 109.46441 * 59.74882 * 21 16 13 36 36 H 1.08994 * 109.46674 * 179.74043 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 -0.0005 8 1 3.0800 -1.2082 0.1476 9 7 1.3386 -2.3805 -0.1890 10 6 -0.0361 -2.5700 -0.7074 11 6 0.0571 -3.8176 -1.6123 12 1 0.1914 -3.5334 -2.6561 13 6 1.2811 -4.5977 -1.0905 14 1 2.0353 -4.7067 -1.8699 15 6 1.8195 -3.7547 0.0855 16 6 0.8239 -5.9581 -0.5622 17 6 -0.1788 -5.7746 0.5610 18 6 -1.3926 -4.9990 0.0455 19 6 -1.1983 -4.6733 -1.4365 20 6 -1.0471 -5.9723 -2.2302 21 6 0.1564 -6.7475 -1.6898 22 1 -0.4850 0.8400 0.0004 23 1 -0.7309 -2.7471 0.1137 24 1 -0.3464 -1.7014 -1.2883 25 1 2.9090 -3.7796 0.1036 26 1 1.4160 -4.1168 1.0311 27 1 1.6870 -6.5133 -0.1949 28 1 0.2911 -5.2173 1.3714 29 1 -0.4997 -6.7492 0.9286 30 1 -1.4984 -4.0728 0.6102 31 1 -2.2901 -5.6049 0.1696 32 1 -2.0655 -4.1247 -1.8040 33 1 -1.9437 -6.5798 -2.1070 34 1 -0.9085 -5.7390 -3.2858 35 1 0.8675 -6.8907 -2.5033 36 1 -0.1647 -7.7185 -1.3128 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306946294.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:36 Heat of formation + Delta-G solvation = 11.661129 kcal Electronic energy + Delta-G solvation = -16226.391393 eV Core-core repulsion = 13903.095381 eV Total energy + Delta-G solvation = -2323.296012 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.55456 -35.35782 -32.04772 -31.59612 -30.46037 -28.89319 -26.17937 -24.84467 -22.21472 -21.33177 -20.19366 -20.15461 -16.88224 -16.07126 -15.69251 -15.42679 -14.64073 -14.29204 -13.48836 -13.01281 -12.73286 -12.21108 -11.84517 -11.69084 -11.61193 -11.38812 -11.32171 -11.03676 -10.89445 -10.74843 -10.39181 -10.20471 -9.93905 -9.89621 -9.63649 -9.20979 -9.13826 -8.97800 -8.52115 -6.70929 -5.69913 -3.02802 3.42825 3.47248 3.48518 4.53556 4.97531 5.04318 5.06056 5.50669 5.56869 5.65227 5.73115 5.75147 5.78501 5.80523 5.91231 5.95726 6.01679 6.06905 6.10948 6.27121 6.37789 6.41575 6.59411 6.64583 6.68564 6.75646 6.79556 6.86149 6.94864 7.05600 7.23159 7.55975 7.70000 7.84169 8.33419 9.21762 9.84736 10.64765 11.43822 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.052658 B = 0.008525 C = 0.008160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.604823 B = 3283.679321 C = 3430.367719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 0.910 3.090 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.223 4.223 8 H 0.073 0.927 9 N -0.598 5.598 10 C 0.160 3.840 11 C -0.103 4.103 12 H 0.061 0.939 13 C -0.091 4.091 14 H 0.063 0.937 15 C 0.125 3.875 16 C -0.076 4.076 17 C -0.114 4.114 18 C -0.115 4.115 19 C -0.076 4.076 20 C -0.111 4.111 21 C -0.110 4.110 22 H 0.253 0.747 23 H 0.029 0.971 24 H 0.079 0.921 25 H 0.038 0.962 26 H 0.030 0.970 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 -11.878 -2.433 12.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.351 4.351 8 H 0.091 0.909 9 N -0.321 5.321 10 C 0.034 3.966 11 C -0.123 4.123 12 H 0.079 0.921 13 C -0.111 4.111 14 H 0.082 0.918 15 C -0.001 4.001 16 C -0.094 4.094 17 C -0.151 4.151 18 C -0.153 4.153 19 C -0.095 4.095 20 C -0.149 4.149 21 C -0.148 4.148 22 H 0.063 0.937 23 H 0.047 0.953 24 H 0.097 0.903 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.784 -11.594 -2.398 11.973 hybrid contribution 0.438 0.848 -0.026 0.955 sum -1.346 -10.746 -2.424 11.098 Atomic orbital electron populations 1.69900 1.04979 1.25209 1.56213 1.24864 0.95602 0.97778 1.02229 0.86241 0.78554 0.83296 0.77921 1.21221 1.21619 1.21126 1.18957 0.90682 0.82649 1.42850 0.90916 1.44945 1.13555 0.99887 1.73748 1.21721 0.86828 0.93728 0.94299 1.22271 0.92999 0.97128 0.99866 0.92077 1.22081 0.97128 0.93556 0.98350 0.91811 1.21895 0.96604 0.86807 0.94817 1.20714 0.97169 0.96199 0.95355 1.21362 0.96267 0.99275 0.98210 1.21601 0.96847 1.00520 0.96289 1.20939 0.98281 0.95130 0.95128 1.21533 0.97644 0.96628 0.99064 1.21515 0.97462 0.97838 0.97971 0.93728 0.95315 0.90307 0.94376 0.95250 0.92059 0.91291 0.93106 0.90655 0.93237 0.91868 0.92928 0.92441 0.92843 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.34 10.86 55.49 0.60 -26.74 16 2 C -0.01 -0.23 5.40 -17.43 -0.09 -0.32 16 3 Si 0.91 22.40 29.56 -169.99 -5.03 17.38 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.22 -6.37 10.35 -15.06 -0.16 -6.53 16 8 H 0.07 2.01 7.84 -52.49 -0.41 1.60 16 9 N -0.60 -15.71 3.38 -168.84 -0.57 -16.28 16 10 C 0.16 3.89 5.22 -2.40 -0.01 3.88 16 11 C -0.10 -2.01 3.13 -89.27 -0.28 -2.29 16 12 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 13 C -0.09 -1.68 3.18 -89.28 -0.28 -1.96 16 14 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 15 C 0.13 2.70 6.55 -2.40 -0.02 2.68 16 16 C -0.08 -1.15 2.73 -91.33 -0.25 -1.40 16 17 C -0.11 -1.75 5.31 -27.40 -0.15 -1.89 16 18 C -0.12 -1.86 5.38 -26.75 -0.14 -2.00 16 19 C -0.08 -1.25 2.77 -90.67 -0.25 -1.50 16 20 C -0.11 -1.53 5.75 -26.74 -0.15 -1.69 16 21 C -0.11 -1.48 5.63 -26.74 -0.15 -1.63 16 22 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.03 0.73 5.36 -51.92 -0.28 0.45 16 24 H 0.08 2.18 6.51 -51.93 -0.34 1.84 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.64 5.36 -51.93 -0.28 0.36 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 1.16 5.81 -51.93 -0.30 0.85 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.39 5.81 -51.93 -0.30 1.09 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 261.09 15.07 3.93 3.93 Total: -1.00 -29.73 261.09 -8.69 -38.42 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -5.70 Total: -2.08 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -1.94 Total: -14.63 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.03 Total: -43.02 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.73 -8.69 -38.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306946294.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.082 kcal (2) G-P(sol) polarization free energy of solvation -29.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds