Wall clock time and date at job start Mon Mar 30 2020 03:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09007 * 110.27177 * 57.90908 * 9 7 2 11 11 C 1.54598 * 110.30732 * 295.71708 * 9 7 2 12 12 C 1.54930 * 102.92140 * 219.12371 * 11 9 7 13 13 N 1.48541 * 103.22615 * 37.41508 * 12 11 9 14 14 C 1.46902 * 110.99837 * 200.28176 * 13 12 11 15 15 C 1.50706 * 109.46976 * 287.39381 * 14 13 12 16 16 C 1.30529 * 124.44764 * 95.02490 * 15 14 13 17 17 C 1.51102 * 111.10053 * 179.97438 * 16 15 14 18 18 C 1.54627 * 104.72733 * 16.43678 * 17 16 15 19 19 C 1.51096 * 124.44627 * 274.72553 * 15 14 13 20 20 C 1.47900 * 105.81800 * 320.79231 * 13 12 11 21 21 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 22 22 H 1.08999 * 110.71974 * 337.48417 * 11 9 7 23 23 H 1.08998 * 110.72298 * 100.76687 * 11 9 7 24 24 H 1.09000 * 110.66833 * 278.98190 * 12 11 9 25 25 H 1.09002 * 110.66839 * 155.84223 * 12 11 9 26 26 H 1.08997 * 109.47719 * 47.39102 * 14 13 12 27 27 H 1.08996 * 109.47241 * 167.39867 * 14 13 12 28 28 H 1.08000 * 124.44772 * 359.95776 * 16 15 14 29 29 H 1.09004 * 110.38225 * 135.25106 * 17 16 15 30 30 H 1.09003 * 110.38773 * 257.62295 * 17 16 15 31 31 H 1.09002 * 111.03550 * 93.39919 * 18 17 16 32 32 H 1.09003 * 111.04080 * 217.32972 * 18 17 16 33 33 H 1.08995 * 110.39151 * 282.39678 * 19 15 14 34 34 H 1.09001 * 110.39149 * 44.77573 * 19 15 14 35 35 H 1.09000 * 109.91711 * 265.97501 * 20 13 12 36 36 H 1.09005 * 110.08240 * 144.77921 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.5921 -2.5549 -0.8660 11 6 0.4375 -2.6490 1.3065 12 6 0.6021 -4.1515 1.6468 13 7 2.0056 -4.4373 1.2533 14 6 2.2117 -5.8770 1.0467 15 6 2.2129 -6.5806 2.3794 16 6 1.1672 -7.1490 2.9153 17 6 1.5076 -7.7634 4.2531 18 6 2.8535 -7.1153 4.6522 19 6 3.4264 -6.7264 3.2677 20 6 2.2346 -3.6840 0.0012 21 1 -0.4850 -0.8401 -0.0004 22 1 0.8577 -2.0263 2.0963 23 1 -0.6112 -2.4044 1.1378 24 1 -0.0918 -4.7564 1.0632 25 1 0.4596 -4.3221 2.7139 26 1 1.4076 -6.2740 0.4271 27 1 3.1678 -6.0395 0.5492 28 1 0.1872 -7.1762 2.4621 29 1 0.7384 -7.5244 4.9874 30 1 1.6199 -8.8434 4.1573 31 1 2.6944 -6.2351 5.2752 32 1 3.5013 -7.8350 5.1529 33 1 4.0810 -7.5121 2.8907 34 1 3.9652 -5.7810 3.3329 35 1 2.0431 -4.3260 -0.8586 36 1 3.2600 -3.3156 -0.0318 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307494244.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:39 Heat of formation + Delta-G solvation = -11.198600 kcal Electronic energy + Delta-G solvation = -15149.077481 eV Core-core repulsion = 12824.790196 eV Total energy + Delta-G solvation = -2324.287284 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.33217 -38.95289 -35.51109 -32.77325 -30.18319 -29.82421 -29.09908 -26.25156 -25.26591 -22.16554 -21.64281 -21.41140 -19.04074 -18.96157 -17.11543 -16.73356 -15.96151 -15.87791 -15.62530 -15.19417 -14.62050 -14.07288 -13.56156 -13.45316 -13.30238 -13.05892 -12.66561 -12.54104 -12.40255 -12.07089 -11.98775 -11.93749 -11.88585 -11.85289 -11.70252 -11.50377 -10.55439 -10.47710 -9.67609 -9.30228 -8.57822 -6.29652 1.24711 1.53936 1.61876 1.80977 2.58995 3.16788 3.23910 3.65848 3.74149 3.96995 4.05108 4.22400 4.24771 4.28944 4.36146 4.48412 4.56980 4.60558 4.69971 4.81706 4.86860 4.91826 4.98647 5.05921 5.08300 5.14191 5.22958 5.33199 5.40064 5.43318 5.66328 5.95506 6.02685 6.11514 6.19241 6.24393 6.67564 7.49265 8.81071 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.049375 B = 0.006010 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.956087 B = 4658.080382 C = 4739.055640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.031 4.031 3 Si 1.113 2.887 4 H -0.284 1.284 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.601 4.601 8 H 0.045 0.955 9 C 0.014 3.986 10 H -0.004 1.004 11 C -0.103 4.103 12 C 0.053 3.947 13 N -0.517 5.517 14 C 0.090 3.910 15 C -0.132 4.132 16 C -0.171 4.171 17 C -0.093 4.093 18 C -0.121 4.121 19 C -0.091 4.091 20 C 0.062 3.938 21 H 0.260 0.740 22 H 0.040 0.960 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.040 0.960 27 H 0.081 0.919 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.034 0.966 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.163 -15.009 6.758 16.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.229 4.229 3 Si 0.935 3.065 4 H -0.210 1.210 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.639 4.639 8 H 0.063 0.937 9 C -0.006 4.006 10 H 0.014 0.986 11 C -0.142 4.142 12 C -0.075 4.075 13 N -0.241 5.241 14 C -0.037 4.037 15 C -0.133 4.133 16 C -0.190 4.190 17 C -0.130 4.130 18 C -0.159 4.159 19 C -0.128 4.128 20 C -0.065 4.065 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.097 0.903 26 H 0.058 0.942 27 H 0.099 0.901 28 H 0.137 0.863 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.361 -13.230 7.148 15.657 hybrid contribution -0.690 -1.664 -0.991 2.056 sum 3.671 -14.894 6.157 16.529 Atomic orbital electron populations 1.70908 1.07755 1.30327 1.48614 1.27191 0.96659 1.06199 0.92873 0.82975 0.74148 0.71591 0.77752 1.20986 1.19925 1.19621 1.22344 0.93956 0.92680 1.54903 0.93689 1.19667 0.93697 0.94402 0.92784 0.98593 1.22459 0.98077 0.94831 0.98784 1.23100 0.88800 0.95215 1.00352 1.64677 1.23006 1.07040 1.29418 1.20996 1.01307 0.86977 0.94412 1.21899 0.97062 0.98214 0.96098 1.23341 0.97761 0.99883 0.98053 1.21321 0.97346 1.00334 0.93988 1.22477 0.96661 1.00735 0.95993 1.21291 0.95900 1.01360 0.94209 1.22716 0.99984 0.94086 0.89758 0.92927 0.94099 0.94002 0.94021 0.90280 0.94211 0.90068 0.86333 0.90673 0.89407 0.91881 0.89151 0.89810 0.92345 0.94770 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.77 13.45 21.45 0.29 -57.48 16 2 C -0.03 -1.81 5.34 84.65 0.45 -1.36 16 3 Si 1.11 51.15 29.90 68.60 2.05 53.20 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.60 -34.60 8.37 25.60 0.21 -34.39 16 8 H 0.04 2.58 7.34 -2.91 -0.02 2.55 16 9 C 0.01 0.70 2.54 -10.66 -0.03 0.68 16 10 H 0.00 -0.22 7.95 -2.38 -0.02 -0.24 16 11 C -0.10 -4.97 5.57 31.80 0.18 -4.79 16 12 C 0.05 2.06 5.95 86.65 0.52 2.58 16 13 N -0.52 -20.02 5.23 -887.57 -4.65 -24.67 16 14 C 0.09 2.79 5.14 85.56 0.44 3.23 16 15 C -0.13 -3.56 5.32 -15.87 -0.08 -3.64 16 16 C -0.17 -4.10 10.37 26.26 0.27 -3.83 16 17 C -0.09 -1.75 6.81 30.53 0.21 -1.55 16 18 C -0.12 -2.35 7.20 31.76 0.23 -2.12 16 19 C -0.09 -2.13 6.77 30.59 0.21 -1.92 16 20 C 0.06 2.71 6.31 86.44 0.55 3.26 16 21 H 0.26 16.04 5.65 -92.71 -0.52 15.52 16 22 H 0.04 2.16 7.86 -2.39 -0.02 2.14 16 23 H 0.04 2.05 7.10 -2.39 -0.02 2.04 16 24 H 0.04 1.51 7.81 -2.39 -0.02 1.49 16 25 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 26 H 0.04 1.19 7.81 -2.39 -0.02 1.17 16 27 H 0.08 2.37 8.08 -2.39 -0.02 2.35 16 28 H 0.12 2.77 8.06 -2.91 -0.02 2.74 16 29 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.03 1.37 7.77 -2.39 -0.02 1.35 16 36 H 0.06 2.87 7.39 -2.38 -0.02 2.85 16 Total: -1.00 -63.95 285.41 2.11 -61.84 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 1.27 Total: 10.95 kcal Atomic # 6 Polarization: -46.99 SS G_CDS: 3.15 Total: -43.85 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -4.36 Total: -82.15 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 2.05 Total: 53.20 kcal Total: -63.95 2.11 -61.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307494244.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.642 kcal (2) G-P(sol) polarization free energy of solvation -63.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds