Wall clock time and date at job start Mon Mar 30 2020 03:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99969 * 2 1 4 4 H 1.48501 * 109.47048 * 274.99080 * 3 2 1 5 5 H 1.48494 * 109.47085 * 34.99316 * 3 2 1 6 6 H 1.48501 * 109.46976 * 154.99518 * 3 2 1 7 7 C 1.37873 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00038 * 175.15153 * 7 2 1 9 9 C 1.50701 * 120.00165 * 355.14912 * 7 2 1 10 10 H 1.09004 * 110.64188 * 302.11426 * 9 7 2 11 11 C 1.54590 * 110.72415 * 65.26817 * 9 7 2 12 12 C 1.53993 * 105.13665 * 140.31592 * 11 9 7 13 13 N 1.47893 * 107.06107 * 1.22611 * 12 11 9 14 14 C 1.46898 * 111.00168 * 214.15416 * 13 12 11 15 15 C 1.50701 * 109.47151 * 76.34929 * 14 13 12 16 16 C 1.30524 * 124.44538 * 94.68844 * 15 14 13 17 17 C 1.51108 * 111.10371 * 180.02562 * 16 15 14 18 18 C 1.54934 * 104.73867 * 16.45455 * 17 16 15 19 19 C 1.51102 * 124.44798 * 274.71547 * 15 14 13 20 20 C 1.48535 * 105.82212 * 334.66736 * 13 12 11 21 21 H 0.97008 * 119.99664 * 0.02562 * 1 2 3 22 22 H 1.08999 * 110.30711 * 21.40417 * 11 9 7 23 23 H 1.08997 * 110.30990 * 259.23247 * 11 9 7 24 24 H 1.09004 * 109.91755 * 241.87227 * 12 11 9 25 25 H 1.09006 * 110.08036 * 120.67249 * 12 11 9 26 26 H 1.08994 * 109.47282 * 316.34979 * 14 13 12 27 27 H 1.09006 * 109.47136 * 196.34572 * 14 13 12 28 28 H 1.08001 * 124.45151 * 359.97438 * 16 15 14 29 29 H 1.09002 * 110.38903 * 135.24684 * 17 16 15 30 30 H 1.08993 * 110.38673 * 257.62681 * 17 16 15 31 31 H 1.09000 * 111.12944 * 217.35499 * 18 17 16 32 32 H 1.08997 * 111.07737 * 93.32944 * 18 17 16 33 33 H 1.08999 * 110.38347 * 282.34862 * 19 15 14 34 34 H 1.08996 * 110.38583 * 44.61324 * 19 15 14 35 35 H 1.09000 * 110.66674 * 157.63392 * 20 13 12 36 36 H 1.08998 * 110.66683 * 280.77720 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3912 2.1073 -1.3948 5 1 1.5034 2.6199 0.8029 6 1 3.5955 1.4120 0.5918 7 6 2.0045 -1.1940 0.0005 8 1 3.0816 -1.1958 -0.0785 9 6 1.2550 -2.4968 0.1115 10 1 0.6584 -2.5204 1.0235 11 6 0.3638 -2.7227 -1.1313 12 6 0.4895 -4.2244 -1.4485 13 7 1.3766 -4.8121 -0.4215 14 6 2.1916 -5.8954 -0.9872 15 6 3.3101 -5.3065 -1.8078 16 6 4.5148 -5.0804 -1.3594 17 6 5.3931 -4.4851 -2.4353 18 6 4.4051 -3.9882 -3.5204 19 6 3.1839 -4.8997 -3.2576 20 6 2.2325 -3.6978 0.0600 21 1 -0.4850 0.8401 -0.0004 22 1 0.7257 -2.1274 -1.9696 23 1 -0.6719 -2.4691 -0.9054 24 1 0.9264 -4.3596 -2.4380 25 1 -0.4911 -4.6988 -1.4078 26 1 1.5685 -6.5256 -1.6217 27 1 2.6107 -6.4949 -0.1790 28 1 4.8410 -5.2905 -0.3514 29 1 5.9695 -3.6504 -2.0363 30 1 6.0580 -5.2447 -2.8462 31 1 4.8062 -4.1504 -4.5209 32 1 4.1506 -2.9394 -3.3681 33 1 3.2194 -5.7775 -3.9027 34 1 2.2573 -4.3486 -3.4180 35 1 2.6261 -3.9162 1.0527 36 1 3.0431 -3.5041 -0.6425 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307494245.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:41 Heat of formation + Delta-G solvation = -2.210722 kcal Electronic energy + Delta-G solvation = -15695.221927 eV Core-core repulsion = 13371.324386 eV Total energy + Delta-G solvation = -2323.897541 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.69624 -38.40359 -35.15325 -32.86881 -30.47494 -29.34676 -29.08131 -26.84751 -25.05165 -21.94675 -21.56729 -21.12220 -19.03234 -18.43661 -17.00645 -16.76884 -16.41861 -15.86129 -15.55908 -14.88821 -14.25931 -14.02529 -13.71918 -13.46104 -13.08082 -12.94577 -12.65818 -12.58625 -12.42794 -12.20153 -12.15615 -12.02923 -11.82008 -11.76029 -11.53532 -11.07879 -10.83608 -10.48124 -9.51082 -9.17185 -8.13539 -6.23044 1.30523 1.39061 1.40522 1.51373 2.41966 3.17290 3.35920 3.68436 3.78112 4.09729 4.17668 4.23159 4.33565 4.43836 4.56040 4.62170 4.68815 4.79850 4.86988 4.90513 4.95067 5.04693 5.09045 5.12071 5.19901 5.30079 5.34830 5.38069 5.61078 5.64756 5.81554 5.88813 5.99756 6.11304 6.31382 6.42370 6.86758 7.44136 8.96097 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.028197 B = 0.009488 C = 0.008036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.783942 B = 2950.302553 C = 3483.317864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.042 3.958 10 H -0.004 1.004 11 C -0.090 4.090 12 C 0.035 3.965 13 N -0.520 5.520 14 C 0.089 3.911 15 C -0.172 4.172 16 C -0.163 4.163 17 C -0.095 4.095 18 C -0.126 4.126 19 C -0.096 4.096 20 C 0.048 3.952 21 H 0.260 0.740 22 H 0.031 0.969 23 H 0.033 0.967 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.123 0.877 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.771 -10.268 -6.403 14.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.071 0.929 9 C 0.023 3.977 10 H 0.014 0.986 11 C -0.129 4.129 12 C -0.093 4.093 13 N -0.242 5.242 14 C -0.038 4.038 15 C -0.173 4.173 16 C -0.183 4.183 17 C -0.132 4.132 18 C -0.164 4.164 19 C -0.132 4.132 20 C -0.080 4.080 21 H 0.069 0.931 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.141 0.859 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.287 -10.403 -5.973 14.036 hybrid contribution 0.437 1.533 -0.366 1.635 sum 7.723 -8.870 -6.339 13.361 Atomic orbital electron populations 1.70121 1.07303 1.27191 1.51125 1.25764 0.95639 1.02428 0.94817 0.85620 0.78933 0.79505 0.78100 1.20174 1.20860 1.19090 1.21384 0.93060 0.91755 1.50379 0.92943 1.19488 0.92786 0.92324 0.93112 0.98597 1.22059 0.99088 0.93100 0.98681 1.23019 0.97343 0.94723 0.94177 1.65066 1.17768 1.09582 1.31774 1.21208 0.92029 0.93894 0.96676 1.22708 0.96290 1.01679 0.96661 1.23320 0.95480 1.00206 0.99252 1.21381 0.97568 1.00138 0.94118 1.22499 0.95489 0.98596 0.99775 1.21452 0.98690 0.99527 0.93581 1.23303 0.95784 0.90179 0.98701 0.93090 0.95003 0.94825 0.92674 0.90918 0.89515 0.89574 0.85872 0.91540 0.88930 0.89020 0.93151 0.89183 0.92484 0.92570 0.92590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.66 12.55 21.45 0.27 -54.39 16 2 C 0.01 0.71 5.38 84.65 0.46 1.16 16 3 Si 0.95 44.30 29.54 68.60 2.03 46.33 16 4 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.53 -29.80 8.38 25.60 0.21 -29.59 16 8 H 0.05 2.91 7.78 -2.91 -0.02 2.89 16 9 C 0.04 2.22 2.96 -10.33 -0.03 2.19 16 10 H 0.00 -0.25 8.14 -2.38 -0.02 -0.27 16 11 C -0.09 -4.45 5.61 31.47 0.18 -4.28 16 12 C 0.03 1.36 6.44 86.45 0.56 1.92 16 13 N -0.52 -19.78 5.54 -887.57 -4.91 -24.69 16 14 C 0.09 2.66 5.95 85.56 0.51 3.17 16 15 C -0.17 -4.96 3.77 -15.87 -0.06 -5.02 16 16 C -0.16 -4.49 8.97 26.27 0.24 -4.25 16 17 C -0.10 -2.29 6.82 30.64 0.21 -2.08 16 18 C -0.13 -3.21 7.21 31.81 0.23 -2.98 16 19 C -0.10 -2.56 6.51 30.53 0.20 -2.36 16 20 C 0.05 2.07 5.46 86.65 0.47 2.54 16 21 H 0.26 14.70 8.31 -92.70 -0.77 13.92 16 22 H 0.03 1.65 7.84 -2.39 -0.02 1.63 16 23 H 0.03 1.76 8.09 -2.39 -0.02 1.74 16 24 H 0.06 1.96 4.76 -2.39 -0.01 1.95 16 25 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 26 H 0.09 2.27 7.99 -2.39 -0.02 2.25 16 27 H 0.09 2.36 8.12 -2.38 -0.02 2.34 16 28 H 0.12 3.26 8.06 -2.91 -0.02 3.23 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.06 1.73 5.69 -2.39 -0.01 1.72 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.06 2.42 5.00 -2.39 -0.01 2.41 16 Total: -1.00 -61.66 279.19 1.59 -60.08 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 1.04 Total: 12.24 kcal Atomic # 6 Polarization: -42.74 SS G_CDS: 3.17 Total: -39.57 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -4.64 Total: -79.08 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -61.66 1.59 -60.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307494245.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.869 kcal (2) G-P(sol) polarization free energy of solvation -61.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds