Wall clock time and date at job start Mon Mar 30 2020 02:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34951 * 126.03825 * 2 1 4 4 C 1.35319 * 107.74535 * 180.14478 * 3 2 1 5 5 C 1.50703 * 126.03825 * 179.87468 * 4 3 2 6 6 H 1.09000 * 109.99952 * 20.80496 * 5 4 3 7 7 C 1.54323 * 109.88051 * 259.71054 * 5 4 3 8 8 C 1.55153 * 103.10236 * 218.47902 * 7 5 4 9 9 C 1.54914 * 101.58113 * 35.41476 * 8 7 5 10 10 N 1.47317 * 110.06339 * 141.97757 * 5 4 3 11 11 C 1.36939 * 125.62098 * 298.24747 * 10 5 4 12 12 H 1.08007 * 119.99660 * 359.83860 * 11 10 5 13 13 C 1.38807 * 120.00490 * 179.83295 * 11 10 5 14 14 N 1.31621 * 119.99905 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00131 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47032 * 60.00105 * 15 13 11 17 17 H 1.48499 * 109.46882 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47032 * 299.99907 * 15 13 11 19 19 C 1.39869 * 107.92238 * 359.60366 * 4 3 2 20 20 N 1.30843 * 108.20237 * 0.24811 * 19 4 3 21 21 H 1.08998 * 109.47567 * 270.26722 * 1 2 3 22 22 H 1.09004 * 109.46539 * 30.26677 * 1 2 3 23 23 H 1.08999 * 109.46998 * 150.25900 * 1 2 3 24 24 H 1.07993 * 126.12645 * 359.97438 * 3 2 1 25 25 H 1.09002 * 110.72057 * 100.02653 * 7 5 4 26 26 H 1.09003 * 110.71837 * 336.93226 * 7 5 4 27 27 H 1.09001 * 111.00844 * 153.48781 * 8 7 5 28 28 H 1.09003 * 111.00424 * 277.34027 * 8 7 5 29 29 H 1.08996 * 110.36870 * 81.83287 * 9 8 7 30 30 H 1.09000 * 110.36651 * 204.04382 * 9 8 7 31 31 H 0.97003 * 120.00144 * 179.97438 * 14 13 11 32 32 H 1.08001 * 125.90469 * 180.26029 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5453 -0.0071 6 1 4.5136 2.5407 0.3568 7 6 5.3416 1.6398 -1.4367 8 6 6.8752 1.6172 -1.2025 9 6 6.9913 0.6532 0.0046 10 7 5.8166 0.9549 0.8427 11 6 5.7154 0.7222 2.1884 12 1 4.8080 0.9802 2.7143 13 6 6.7790 0.1548 2.8766 14 7 7.8846 -0.1601 2.2356 15 14 6.6407 -0.1631 4.7122 16 1 5.5105 -1.0913 4.9699 17 1 7.9028 -0.7701 5.2058 18 1 6.3990 1.1198 5.4199 19 6 3.5347 -0.7321 0.0039 20 7 2.2891 -1.1328 0.0058 21 1 -0.3634 0.0048 1.0276 22 1 -0.3632 0.8876 -0.5180 23 1 -0.3633 -0.8923 -0.5098 24 1 1.9282 2.1193 -0.0004 25 1 5.0380 2.5720 -1.9132 26 1 5.0301 0.7834 -2.0346 27 1 7.3975 1.2187 -2.0723 28 1 7.2461 2.6098 -0.9469 29 1 6.9607 -0.3827 -0.3329 30 1 7.9119 0.8448 0.5559 31 1 8.6280 -0.5563 2.7166 32 1 4.4054 -1.3711 0.0074 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307722716.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:52 Heat of formation + Delta-G solvation = 87.962056 kcal Electronic energy + Delta-G solvation = -15240.467153 eV Core-core repulsion = 12816.939454 eV Total energy + Delta-G solvation = -2423.527699 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.98945 -38.85961 -34.54867 -33.90854 -31.79246 -31.00664 -28.76008 -26.92630 -26.19246 -22.50956 -21.78642 -21.69715 -20.53344 -18.78488 -17.41991 -16.87136 -16.17565 -15.99436 -15.60191 -15.11005 -14.42811 -13.87386 -13.76795 -13.51148 -13.37262 -13.26764 -13.14532 -12.84121 -12.69191 -12.04010 -11.96793 -11.68059 -11.60474 -11.29175 -11.17151 -10.66314 -10.19139 -9.17540 -8.71643 -7.67953 -5.09564 1.06767 1.45345 1.48017 1.53867 1.85346 2.00330 2.54661 3.39996 3.74631 3.91517 4.16356 4.19693 4.32722 4.43096 4.48960 4.49380 4.71458 4.74039 4.81095 4.99398 5.05944 5.19663 5.29126 5.33124 5.57634 5.67585 5.77345 5.81617 5.93879 6.33442 6.42477 6.87116 7.21940 7.91434 8.55219 9.33419 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.010771 C = 0.008205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.386686 B = 2599.063879 C = 3411.850410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.383 5.383 3 C 0.055 3.945 4 C -0.243 4.243 5 C 0.223 3.777 6 H 0.045 0.955 7 C -0.105 4.105 8 C -0.134 4.134 9 C 0.153 3.847 10 N -0.607 5.607 11 C -0.208 4.208 12 H 0.069 0.931 13 C -0.070 4.070 14 N -0.949 5.949 15 Si 0.967 3.033 16 H -0.289 1.289 17 H -0.294 1.294 18 H -0.277 1.277 19 C 0.062 3.938 20 N -0.343 5.343 21 H 0.078 0.922 22 H 0.120 0.880 23 H 0.088 0.912 24 H 0.209 0.791 25 H 0.093 0.907 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.065 0.935 29 H -0.020 1.020 30 H 0.071 0.929 31 H 0.243 0.757 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.168 5.365 -7.386 15.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.166 5.166 3 C -0.092 4.092 4 C -0.256 4.256 5 C 0.115 3.885 6 H 0.062 0.938 7 C -0.143 4.143 8 C -0.172 4.172 9 C 0.028 3.972 10 N -0.331 5.331 11 C -0.338 4.338 12 H 0.087 0.913 13 C -0.262 4.262 14 N -0.600 5.600 15 Si 0.797 3.203 16 H -0.216 1.216 17 H -0.220 1.220 18 H -0.203 1.203 19 C -0.123 4.123 20 N -0.166 5.166 21 H 0.097 0.903 22 H 0.138 0.862 23 H 0.107 0.893 24 H 0.226 0.774 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.084 0.916 29 H -0.002 1.002 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.009 4.280 -7.207 15.476 hybrid contribution 0.855 -0.128 1.255 1.524 sum -12.154 4.152 -5.952 14.156 Atomic orbital electron populations 1.22145 0.72057 1.05940 1.04167 1.48777 1.07723 1.03175 1.56953 1.22743 0.89930 0.94479 1.02061 1.21048 0.96019 0.94183 1.14322 1.19498 0.85234 0.92728 0.91014 0.93767 1.22502 0.94924 1.02120 0.94800 1.22867 0.96393 0.99813 0.98167 1.21716 0.92391 0.93111 0.89994 1.44851 1.12449 1.72103 1.03692 1.19153 0.98594 1.32251 0.83762 0.91341 1.25443 0.96595 1.02522 1.01633 1.70045 1.05269 1.50014 1.34711 0.85304 0.76053 0.77791 0.81137 1.21631 1.22020 1.20284 1.23376 0.93971 0.95920 0.99057 1.77177 1.02080 1.10065 1.27288 0.90323 0.86204 0.89348 0.77405 0.88851 0.92228 0.90365 0.91600 1.00166 0.91148 0.94687 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.71 11.47 127.77 1.47 3.18 16 2 N -0.38 -11.64 4.01 -369.57 -1.48 -13.13 16 3 C 0.05 1.65 11.40 83.54 0.95 2.60 16 4 C -0.24 -9.37 4.68 -20.14 -0.09 -9.46 16 5 C 0.22 8.99 3.56 44.54 0.16 9.14 16 6 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 7 C -0.11 -3.53 6.46 31.78 0.21 -3.33 16 8 C -0.13 -4.96 7.09 31.99 0.23 -4.74 16 9 C 0.15 7.64 5.89 86.86 0.51 8.15 16 10 N -0.61 -31.02 2.88 -671.66 -1.93 -32.96 16 11 C -0.21 -11.79 9.97 84.03 0.84 -10.95 16 12 H 0.07 3.85 7.83 -2.91 -0.02 3.83 16 13 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 14 N -0.95 -57.72 10.09 21.65 0.22 -57.50 16 15 Si 0.97 47.53 29.55 68.60 2.03 49.56 16 16 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 17 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 19 C 0.06 2.65 11.65 85.23 0.99 3.64 16 20 N -0.34 -13.60 12.58 -57.02 -0.72 -14.32 16 21 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.21 4.25 8.06 -2.91 -0.02 4.22 16 25 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.06 2.01 7.84 -2.39 -0.02 2.00 16 27 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 29 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 30 H 0.07 4.01 5.87 -2.39 -0.01 4.00 16 31 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 32 H 0.15 7.09 8.06 -2.91 -0.02 7.06 16 Total: -1.00 -71.50 269.19 4.93 -66.58 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: 1.09 Total: 7.14 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: 5.72 Total: -5.37 kcal Atomic # 7 Polarization: -113.99 SS G_CDS: -3.91 Total: -117.90 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -71.50 4.93 -66.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307722716.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.538 kcal (2) G-P(sol) polarization free energy of solvation -71.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds