Wall clock time and date at job start Mon Mar 30 2020 02:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34949 * 126.03993 * 2 1 4 4 C 1.35319 * 107.74393 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.03435 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.87200 * 339.56887 * 5 4 3 7 7 C 1.54327 * 110.00696 * 100.66271 * 5 4 3 8 8 C 1.55164 * 102.93841 * 141.68269 * 7 5 4 9 9 C 1.55128 * 101.48405 * 324.32935 * 8 7 5 10 10 N 1.47018 * 109.88283 * 218.54772 * 5 4 3 11 11 C 1.36936 * 125.64712 * 61.45015 * 10 5 4 12 12 H 1.08000 * 119.99936 * 10.18294 * 11 10 5 13 13 C 1.38806 * 119.99950 * 189.90146 * 11 10 5 14 14 N 1.31623 * 120.00129 * 9.85293 * 13 11 10 15 15 Si 1.86804 * 120.00064 * 189.84883 * 13 11 10 16 16 H 1.48500 * 109.47066 * 94.13106 * 15 13 11 17 17 H 1.48503 * 109.47078 * 214.12836 * 15 13 11 18 18 H 1.48497 * 109.46924 * 334.12814 * 15 13 11 19 19 C 1.39862 * 107.92091 * 0.26358 * 4 3 2 20 20 N 1.30834 * 108.20576 * 359.55600 * 19 4 3 21 21 H 1.09007 * 109.47266 * 89.99865 * 1 2 3 22 22 H 1.09001 * 109.47528 * 209.99767 * 1 2 3 23 23 H 1.08998 * 109.47129 * 330.00004 * 1 2 3 24 24 H 1.07994 * 126.12504 * 0.04471 * 3 2 1 25 25 H 1.08998 * 110.72249 * 260.04198 * 7 5 4 26 26 H 1.09000 * 110.72084 * 23.14377 * 7 5 4 27 27 H 1.09000 * 111.00612 * 82.57214 * 8 7 5 28 28 H 1.09003 * 110.99923 * 206.42169 * 8 7 5 29 29 H 1.08994 * 110.50045 * 278.45387 * 9 8 7 30 30 H 1.09005 * 110.33861 * 156.06185 * 9 8 7 31 31 H 0.96998 * 119.99959 * 179.97438 * 14 13 11 32 32 H 1.08007 * 125.89252 * 179.73720 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5437 0.6664 -0.0006 5 6 4.7680 1.5452 -0.0013 6 1 4.5087 2.5415 -0.3592 7 6 5.3541 1.6353 1.4235 8 6 6.8850 1.6181 1.1711 9 6 6.9877 0.6528 -0.0389 10 7 5.8042 0.9582 -0.8633 11 6 5.6873 0.7277 -2.2081 12 1 4.8461 1.1290 -2.7536 13 6 6.6531 -0.0168 -2.8712 14 7 7.5723 -0.6624 -2.1851 15 14 6.6482 -0.1026 -4.7372 16 1 7.5566 0.9376 -5.2830 17 1 7.1137 -1.4440 -5.1723 18 1 5.2704 0.1302 -5.2398 19 6 3.5345 -0.7322 -0.0071 20 7 2.2891 -1.1328 -0.0006 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.9281 2.1192 0.0007 25 1 5.0533 2.5652 1.9061 26 1 5.0493 0.7761 2.0209 27 1 7.2498 2.6125 0.9140 28 1 7.4186 1.2188 2.0336 29 1 6.9592 -0.3839 0.2963 30 1 7.9015 0.8457 -0.6009 31 1 8.2470 -1.1830 -2.6485 32 1 4.4053 -1.3711 -0.0131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307722735.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:54 Heat of formation + Delta-G solvation = 85.522540 kcal Electronic energy + Delta-G solvation = -15257.307626 eV Core-core repulsion = 12833.674142 eV Total energy + Delta-G solvation = -2423.633484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.97217 -38.87638 -34.52419 -33.90572 -31.78234 -31.02039 -28.77070 -26.91082 -26.18512 -22.51522 -21.81404 -21.68681 -20.51791 -18.74736 -17.42856 -16.78647 -16.16346 -16.07900 -15.61617 -15.09641 -14.41310 -13.90113 -13.72406 -13.64531 -13.33344 -13.25741 -13.15623 -12.78167 -12.69348 -11.97817 -11.96349 -11.67177 -11.62143 -11.43558 -11.17645 -10.59039 -10.17233 -9.16373 -8.67937 -7.79141 -5.10434 1.08631 1.45191 1.45959 1.54229 1.87229 2.02770 2.54551 3.39020 3.75690 3.91792 4.17157 4.18717 4.31876 4.42662 4.49662 4.50437 4.71806 4.74780 4.82141 4.99504 5.07289 5.19757 5.29206 5.33444 5.56861 5.69367 5.73928 5.83581 5.85718 6.30136 6.37807 6.89255 7.19398 7.89730 8.55971 9.32738 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024571 B = 0.010873 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.295547 B = 2574.662073 C = 3353.095664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.383 5.383 3 C 0.054 3.946 4 C -0.242 4.242 5 C 0.222 3.778 6 H 0.047 0.953 7 C -0.105 4.105 8 C -0.134 4.134 9 C 0.176 3.824 10 N -0.606 5.606 11 C -0.212 4.212 12 H 0.068 0.932 13 C -0.066 4.066 14 N -0.948 5.948 15 Si 0.964 3.036 16 H -0.286 1.286 17 H -0.299 1.299 18 H -0.276 1.276 19 C 0.064 3.936 20 N -0.345 5.345 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.120 0.880 24 H 0.210 0.790 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.079 0.921 29 H -0.008 1.008 30 H 0.031 0.969 31 H 0.244 0.756 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.502 6.643 7.450 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.167 5.167 3 C -0.093 4.093 4 C -0.255 4.255 5 C 0.115 3.885 6 H 0.065 0.935 7 C -0.143 4.143 8 C -0.172 4.172 9 C 0.051 3.949 10 N -0.330 5.330 11 C -0.342 4.342 12 H 0.086 0.914 13 C -0.259 4.259 14 N -0.598 5.598 15 Si 0.794 3.206 16 H -0.213 1.213 17 H -0.226 1.226 18 H -0.201 1.201 19 C -0.121 4.121 20 N -0.168 5.168 21 H 0.096 0.904 22 H 0.106 0.894 23 H 0.138 0.862 24 H 0.226 0.774 25 H 0.114 0.886 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.010 0.990 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.366 5.538 7.288 15.386 hybrid contribution 0.973 -0.116 -1.343 1.662 sum -11.393 5.422 5.945 13.948 Atomic orbital electron populations 1.22137 0.72109 1.05922 1.04121 1.48770 1.07701 1.03196 1.57025 1.22753 0.89935 0.94464 1.02160 1.21074 0.96096 0.94133 1.14180 1.19500 0.85217 0.92911 0.90918 0.93541 1.22497 0.94752 1.02217 0.94823 1.22908 0.96582 0.99752 0.97991 1.21252 0.90080 0.93799 0.89801 1.44814 1.11890 1.72329 1.03935 1.19140 1.06405 1.25075 0.83551 0.91384 1.25467 0.99417 0.99521 1.01494 1.70150 1.19363 1.35975 1.34268 0.85260 0.77515 0.76334 0.81472 1.21312 1.22621 1.20070 1.23340 0.93870 0.95999 0.98909 1.77171 1.02113 1.10081 1.27412 0.90381 0.89401 0.86172 0.77358 0.88637 0.92301 0.91192 0.90239 0.99018 0.95008 0.94691 0.83626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.77 11.47 127.77 1.47 3.23 16 2 N -0.38 -11.90 4.01 -369.58 -1.48 -13.38 16 3 C 0.05 1.64 11.40 83.54 0.95 2.59 16 4 C -0.24 -9.44 4.67 -20.14 -0.09 -9.53 16 5 C 0.22 8.89 3.55 44.60 0.16 9.05 16 6 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 7 C -0.10 -3.46 6.47 31.79 0.21 -3.26 16 8 C -0.13 -4.83 7.10 32.07 0.23 -4.61 16 9 C 0.18 8.70 5.44 86.93 0.47 9.18 16 10 N -0.61 -30.79 2.86 -671.96 -1.92 -32.71 16 11 C -0.21 -12.00 9.91 84.03 0.83 -11.17 16 12 H 0.07 3.82 7.85 -2.91 -0.02 3.80 16 13 C -0.07 -3.85 5.40 84.86 0.46 -3.40 16 14 N -0.95 -58.13 10.68 21.65 0.23 -57.89 16 15 Si 0.96 47.53 29.56 68.60 2.03 49.56 16 16 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 17 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 19 C 0.06 2.81 11.65 85.23 0.99 3.80 16 20 N -0.34 -13.99 12.58 -57.03 -0.72 -14.71 16 21 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 22 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.21 4.29 8.06 -2.91 -0.02 4.26 16 25 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.06 1.99 7.85 -2.39 -0.02 1.97 16 27 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 29 H -0.01 -0.45 8.08 -2.39 -0.02 -0.47 16 30 H 0.03 1.77 6.92 -2.38 -0.02 1.75 16 31 H 0.24 14.65 8.31 -92.71 -0.77 13.88 16 32 H 0.15 7.24 8.06 -2.91 -0.02 7.22 16 Total: -1.00 -72.36 270.17 4.90 -67.46 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.09 Total: 5.78 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 5.67 Total: -4.11 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -3.89 Total: -118.69 kcal Atomic # 14 Polarization: 47.53 SS G_CDS: 2.03 Total: 49.56 kcal Total: -72.36 4.90 -67.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307722735.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.982 kcal (2) G-P(sol) polarization free energy of solvation -72.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds