Wall clock time and date at job start Mon Mar 30 2020 03:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34858 * 126.28925 * 2 1 4 4 N 1.36340 * 108.21612 * 179.97438 * 3 2 1 5 5 C 1.46496 * 125.63437 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.46995 * 90.00435 * 5 4 3 7 7 C 1.52997 * 109.47127 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47131 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47188 * 180.02562 * 8 7 6 10 10 H 1.07998 * 120.00218 * 359.97438 * 9 8 7 11 11 C 1.37885 * 119.99966 * 180.02562 * 9 8 7 12 12 N 1.31505 * 119.99945 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99899 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47418 * 89.99714 * 13 11 9 15 15 H 1.48498 * 109.47091 * 209.99774 * 13 11 9 16 16 H 1.48501 * 109.47296 * 329.99817 * 13 11 9 17 17 C 1.36344 * 108.73015 * 0.26672 * 4 3 2 18 18 C 1.34851 * 108.21591 * 359.56415 * 17 4 3 19 19 C 1.50701 * 126.29023 * 180.15750 * 18 17 4 20 20 H 1.09000 * 109.46862 * 89.97083 * 1 2 3 21 21 H 1.08998 * 109.47140 * 209.97029 * 1 2 3 22 22 H 1.08997 * 109.47114 * 329.97252 * 1 2 3 23 23 H 1.07998 * 125.88971 * 0.03911 * 3 2 1 24 24 H 1.09001 * 109.47464 * 330.00696 * 5 4 3 25 25 H 1.09001 * 109.47459 * 210.00411 * 5 4 3 26 26 H 1.09001 * 109.47002 * 299.99701 * 6 5 4 27 27 H 1.08993 * 109.46955 * 60.00138 * 6 5 4 28 28 H 1.09001 * 109.47289 * 299.99953 * 7 6 5 29 29 H 1.09004 * 109.47261 * 59.99697 * 7 6 5 30 30 H 1.09001 * 109.46997 * 299.99574 * 8 7 6 31 31 H 1.08992 * 109.47534 * 59.99520 * 8 7 6 32 32 H 0.97007 * 119.99787 * 180.02562 * 12 11 9 33 33 H 1.07993 * 125.88986 * 179.69799 * 17 4 3 34 34 H 1.08998 * 109.47510 * 270.31432 * 19 18 17 35 35 H 1.08997 * 109.47400 * 30.32111 * 19 18 17 36 36 H 1.09001 * 109.46817 * 150.31149 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3052 1.0870 0.0000 4 7 3.6013 0.6640 0.0006 5 6 4.7821 1.5312 0.0002 6 6 5.1929 1.8339 1.4427 7 6 6.4257 2.7401 1.4424 8 6 6.8368 3.0423 2.8847 9 6 8.0507 3.9353 2.8844 10 1 8.4857 4.2550 1.9491 11 6 8.6066 4.3434 4.0784 12 7 8.0773 3.9538 5.2174 13 14 10.1117 5.4498 4.0780 14 1 9.6814 6.8711 4.0784 15 1 10.9256 5.1788 5.2902 16 1 10.9248 5.1791 2.8652 17 6 3.6170 -0.6993 -0.0051 18 6 2.3410 -1.1355 0.0006 19 6 1.8899 -2.5735 0.0007 20 1 -0.3633 0.0005 -1.0277 21 1 -0.3633 -0.8902 0.5134 22 1 -0.3633 0.8897 0.5142 23 1 1.9747 2.1152 0.0006 24 1 4.5483 2.4633 -0.5142 25 1 5.6019 1.0286 -0.5131 26 1 4.3731 2.3366 1.9560 27 1 5.4267 0.9019 1.9571 28 1 7.2456 2.2379 0.9289 29 1 6.1914 3.6721 0.9280 30 1 6.0171 3.5444 3.3986 31 1 7.0712 2.1102 3.3987 32 1 8.4682 4.2412 6.0574 33 1 4.4991 -1.3223 -0.0107 34 1 1.7815 -2.9204 -1.0269 35 1 2.6301 -3.1864 0.5149 36 1 0.9318 -2.6536 0.5143 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385237682.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:14 Heat of formation + Delta-G solvation = 11.996612 kcal Electronic energy + Delta-G solvation = -14241.411731 eV Core-core repulsion = 11918.130266 eV Total energy + Delta-G solvation = -2323.281464 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 221.148 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.09118 -35.67605 -33.61591 -32.11263 -30.95757 -29.38665 -26.51978 -26.24718 -24.05965 -21.79602 -20.20388 -19.86647 -18.83017 -16.42752 -16.26917 -14.90406 -14.73223 -14.47488 -13.83326 -13.60136 -13.21724 -12.73246 -12.69026 -12.52885 -12.36303 -12.24329 -11.76855 -11.61066 -11.49115 -11.04507 -11.03117 -10.67793 -10.63178 -10.53258 -9.76534 -9.40929 -9.11642 -8.37882 -8.05023 -7.84408 -6.02465 -4.05474 2.45582 3.05164 3.18083 3.29792 3.36140 3.39234 4.43413 4.87590 5.17133 5.19241 5.27653 5.33184 5.36364 5.43681 5.49578 5.66776 5.68195 5.71393 5.84985 5.86888 6.00674 6.07435 6.11560 6.31921 6.40532 6.57654 6.67767 6.78861 7.04949 7.20187 7.44997 7.60710 7.64032 7.77374 7.97021 8.38882 9.01742 9.58840 11.08831 Molecular weight = 221.15amu Principal moments of inertia in cm(-1) A = 0.061146 B = 0.004066 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.812497 B = 6883.926627 C = 6900.956111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.177 4.177 3 C -0.012 4.012 4 N -0.440 5.440 5 C 0.103 3.897 6 C -0.132 4.132 7 C -0.108 4.108 8 C 0.021 3.979 9 C -0.523 4.523 10 H 0.055 0.945 11 C 0.056 3.944 12 N -0.895 5.895 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C -0.012 4.012 18 C -0.177 4.177 19 C -0.074 4.074 20 H 0.055 0.945 21 H 0.057 0.943 22 H 0.055 0.945 23 H 0.156 0.844 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.015 0.985 31 H 0.016 0.984 32 H 0.261 0.739 33 H 0.156 0.844 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.522 -8.473 -11.088 18.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.184 4.184 3 C -0.143 4.143 4 N -0.114 5.114 5 C -0.018 4.018 6 C -0.170 4.170 7 C -0.146 4.146 8 C -0.016 4.016 9 C -0.561 4.561 10 H 0.073 0.927 11 C -0.145 4.145 12 N -0.534 5.534 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.143 4.143 18 C -0.183 4.183 19 C -0.131 4.131 20 H 0.073 0.927 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.174 0.826 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.070 0.930 33 H 0.174 0.826 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.175 -8.225 -10.899 17.644 hybrid contribution 0.965 0.722 0.188 1.220 sum -10.210 -7.502 -10.711 16.591 Atomic orbital electron populations 1.20044 0.90722 1.01507 1.00842 1.19336 0.95122 0.92274 1.11623 1.21595 0.82632 0.98939 1.11092 1.44182 1.06180 1.06027 1.54967 1.22098 0.85744 0.94083 0.99871 1.22056 1.00022 1.01265 0.93663 1.21592 0.94246 0.97098 1.01667 1.19085 0.96213 0.96700 0.89594 1.21255 1.12522 1.30053 0.92278 0.92691 1.25037 0.97374 0.96407 0.95669 1.69966 1.40893 1.45290 0.97280 0.86591 0.82931 0.80939 0.77525 1.20643 1.21186 1.19871 1.21593 0.98428 0.83141 1.11104 1.19333 0.92323 0.95075 1.11612 1.20044 1.00652 0.91581 1.00840 0.92668 0.92392 0.92591 0.82622 0.89584 0.89576 0.91786 0.91780 0.93165 0.93162 0.96621 0.96605 0.92962 0.82625 0.92671 0.92588 0.92391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.79 10.22 36.01 0.37 -0.42 16 2 C -0.18 -2.40 6.14 -104.82 -0.64 -3.05 16 3 C -0.01 -0.17 11.35 -16.75 -0.19 -0.36 16 4 N -0.44 -6.25 2.75 -117.13 -0.32 -6.57 16 5 C 0.10 1.39 6.09 -4.04 -0.02 1.37 16 6 C -0.13 -2.19 5.54 -26.73 -0.15 -2.34 16 7 C -0.11 -2.13 5.15 -26.73 -0.14 -2.27 16 8 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 9 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 10 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 13 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 C -0.01 -0.17 11.35 -16.75 -0.19 -0.36 16 18 C -0.18 -2.40 6.14 -104.82 -0.64 -3.04 16 19 C -0.07 -0.79 10.22 36.01 0.37 -0.42 16 20 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 21 H 0.06 0.57 7.36 -51.93 -0.38 0.19 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 24 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.58 7.36 -51.93 -0.38 0.19 16 LS Contribution 303.20 15.07 4.57 4.57 Total: -1.00 -30.98 303.20 -8.05 -39.04 By element: Atomic # 1 Polarization: 3.03 SS G_CDS: -6.22 Total: -3.20 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -1.79 Total: -24.09 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.41 Total: -32.94 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.98 -8.05 -39.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385237682.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.032 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds